Spec013819.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizotus pectinicornis
Gene Symbol
-
Assembly
GCA_951805265.1
Location
OX638208.1:3647185-3650580[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.027 1.8 9.3 0.8 1 23 194 216 194 216 0.94
2 27 0.99 68 4.4 2.5 2 23 223 245 222 245 0.93
3 27 0.36 24 5.8 0.7 1 19 252 270 252 274 0.86
4 27 0.00097 0.066 13.8 0.9 1 23 279 301 279 301 0.98
5 27 0.00019 0.013 16.1 1.8 1 23 307 329 307 329 0.98
6 27 6.8e-07 4.6e-05 23.8 7.0 1 23 335 358 335 358 0.97
7 27 3.7e-05 0.0025 18.3 0.1 2 23 394 415 394 415 0.98
8 27 0.00012 0.0082 16.7 1.3 2 23 422 443 421 443 0.97
9 27 1.8e-08 1.2e-06 28.7 1.8 1 23 449 471 449 471 0.99
10 27 0.0019 0.13 12.9 0.3 2 23 478 499 477 499 0.97
11 27 5.4e-06 0.00037 20.9 2.2 1 23 517 539 517 539 0.99
12 27 3.8e-07 2.6e-05 24.6 1.3 1 23 545 568 545 568 0.98
13 27 0.0002 0.013 16.0 0.4 1 23 585 607 585 607 0.98
14 27 0.00069 0.047 14.3 0.8 1 23 613 635 613 635 0.99
15 27 2.6e-07 1.8e-05 25.1 3.7 1 23 641 663 641 663 0.98
16 27 1.9e-05 0.0013 19.2 3.7 1 23 669 691 669 691 0.98
17 27 6.9e-05 0.0047 17.4 1.3 1 23 705 727 705 727 0.99
18 27 2.4e-07 1.6e-05 25.2 3.0 1 23 733 755 733 755 0.97
19 27 7.5e-06 0.00051 20.5 6.1 1 23 761 783 761 783 0.98
20 27 8.3e-05 0.0057 17.2 1.5 1 23 800 822 800 822 0.98
21 27 5.7e-05 0.0039 17.7 1.3 1 23 828 850 828 850 0.99
22 27 7.8e-08 5.3e-06 26.7 3.4 1 23 856 878 856 878 0.97
23 27 0.00027 0.019 15.6 3.4 3 23 888 908 880 908 0.96
24 27 0.00038 0.026 15.1 3.3 1 23 914 936 914 936 0.98
25 27 3e-07 2e-05 24.9 0.2 1 23 942 964 942 964 0.99
26 27 3.7e-06 0.00025 21.4 3.8 1 23 970 992 970 992 0.98
27 27 5.3e-06 0.00036 21.0 6.1 1 23 998 1020 998 1020 0.98

Sequence Information

Coding Sequence
ATggaatcaattttttgtagaaCTTGCTGGCTTTCCATCGAACAAGAGACGTCCGTGAACGTTTTCGCCTCCAACAAAAATGGGGAAACCGCAGCAGACATGCTAATGCTAGTCGCCCCTATAACAATCTATGAAGAGgacattttgtcaaaaaagatGTGTCTAAGCTGTTTCGAGAAATTGAACATTGCCTATGAGTTCAGGAACTTGGTTGTGGCTTCTGATTCGCGGTTTAGAGAACGATTCGGTTCGGAAGAACAAATCTTGAAACTGGAAGTGGTAGACGAGCAACTCGTCGATTTGGCCGATGGACAACCAAGCgacacttttaattttgaaagcaGCCACAGTAACGACAACGGAGACGCAGAAAGCGTTATTTGCAAAGTTAAGGGAGAAGCGGCGCAACCAACTTCCAGTTGGGACAATATTAACGAAGAAAGTTGGGGGCAAAGCGGGGTGTTTGTGCAAGACTGGAGCCGTTATGGTGAAAGTCTTGAAAAATCTCCAGAGTGTGGCAGAACCGTGAAGTTCCAATCGGTCATTGGCAACCAGAAGATCGACCAACTCCTCACTCCCTACCTTTGCCTGACTTGCGAGAGAGGCTTCAAACAACTGATCCAACTAAAGTTGCACAACTTGCGCCACCTGACGGGAAAACGCCTAATTTGTTACGTTTGCAACTCGAAATTTTTGGATAAAAGACATTTGCTTAGGCACTTTCGCGCGCGTCACGCCACCAACCCCAAAGCGTTTCCGTGCAATTTTTGCGGAAAACCCCTAAAAAATTCCCGGGTAGCTCGAAAACACGACGAGAAGCACCGCGACGCCAACTACACATGCGCTTattgcgaaaaaaatttcggggacgaacaaaaattttcgagaCACGTAAAAATTCACACCAGTCAAAAGCGACACCAATGTCCGATTTGCGGCGTGAGGTTCCTCCGCAAGCCGCACATGGTCGATCACATGAGGACCCATCTGGGGGTCAAGCCCCACGAGTGTCGCCATTGCGACAAGAAGTTTACGCAAAAATCGAACTTGAGGCGCCATCTAAGATCGCTTCACAGCGACGCGGAATCGCCCCAAACTGGTGGCTatcaaaatagttttgttaaaGTCGAAACGGGGAGTGAGGTGGTTGGGGTGAAGGAGGAACCGCGCGAGGGTGGCCAGTGCCCTCTTTGCGGTAAGAGGTTTGCTGCCAGGGGGAGTCTTAAAACTCACTTGTTGATCCACGCGGGCGAGAAGCCCCAGGAATGCGGCTATTGCGGGATGCGGTTTTTGCAAAAGAGTCATCTGAACGACCACTTGAGGATCCACACGGGGGCGAAGCCCTACGAGTGTCGCGATTGCGACAAGAAGTTCACCCAGAAATCGAACCTCATCCGCCACGCCAGGACCCACACCGGGCAACAACCCCTCCAATGCTCCGTTTGTGGCAGAAAGTTCTGGTTGAAACGCGCCCTCGAGCTGCACATGAGGTTGCATGGAGGGGAAGGAGCTGTTGAGGGTTGCGACACGAAATTTTCCCAAATCCTCTTTCAATGTTCTTTTTGCGGCTTGAAATTTTCCCAGAAATCTTTCCTCGAGGACCATCTCAAAACTCACGGAAGCGCTAACCAATTTGAATGCGGCGACTGCGGCAGGAAGTTCACGCTGAAGTCCAACTTGTACCGTCACACAAGAACGGTGCACGAGGGCAAAAAGACCGCGGAGCCCCGCAAAGAACCGGATGCGGCCCTATTTCAATGTCCCGATTGCGGCAAGAAATTCCTGGCGAAAAGAAACTTCGAACTCCACCTGATGGTCCATAGCGGCGAAACGCCCTACAAATGCTCCGATTGCGACATGGGGTTCCTGCGCAGAAACCAGTACGAACAACATATCAAAATCCACGTGGGGGTAAAGCCCTACGAGTGCCGCGATTGCGGTAAGAAATTCACTCACAAATCGAACCTGGCGCGTCACACCAAACTGCACGCCAGCAACAAGTTGCACCAGTGCCACATTTGCGGCCAGAAATTTATCCAGAAACAGAACCTGGCGCTGCACGTCAAAAAACACTCGGGGGTCTCCGAAAGCGGCGGTTTGGGGCAACCCCCTTACAAGTGTGGCGATTGCGGCAAAACTTTGTCGACAAAGAGAAGTTTAGAGTTTCACATGACCACGCACAGTGACGAGAAGCCCCATAGTTGTTCGATTTGCGGCAAAAGTTTCAGTCGAAAGTATTATTTGAGCGACCACATGAAAATCCACATTGGCTATAAACCCCACAAATGTTCCAAATGCCCCAAGAGGTTCAtccaaacttcaaattttaaacgacACTTGAAGACGCATCAAAACTCCGAAAGTAATAAAGTCGAGGAAATCTCGCAAGGACCCCCATTTCGTTGTTGCGTTTGCAGCAAGGAGTTTGCGGTTGAAAGAAACCTCACCATCCACATGAAGATCCACACGGGTCAAGAACCCTACAGATGCCCCGATTGCGACACGACTTTCCTCCGCAGAGCTCATTACGCGGACCACATGAAGATCCACGCGGGGGTGAAACCCTACGATTGCCGCTATTGCGGCAAGAGGTTCACCCAAAAATCCAACCTGACCCGCCATACGAGACTCCACACCAACACCAACTACAAGCGCCATCTCTGCCACACTTGCGGCCAAACATTCAGCGAGAAGCAGTATCTCGAGTTACACATCAAAATCCACAACGGGGAAACCCTCCACAAATGCTTTCATTGCCCGAGGAAATTCGCCAACAAACCTAGACTCGAGGCCCACATTTTGAGACATACCGACGAAAAGTCGTACGAGTGTCCCGTTTGCGGGAAGACTTTAACGACGAAAAAGAGTCTCGAGATTCACGTGAGGACGCACACGGGGGAGAAACCGCATCAATGCGTCGTCTGCAAGAAGAGTTTCAACCGGAAGGGCTACTTGAAGTACCATATGAGGGTGCACAGCGGACTGAAACCCCATCAGTGTTTGCATTGCGGCAGGAGGTTCGGgcaaaaatcgaattttcgGCGACACCTGAGGATACACGTGAATGAGGAGCCATCGTAG
Protein Sequence
MESIFCRTCWLSIEQETSVNVFASNKNGETAADMLMLVAPITIYEEDILSKKMCLSCFEKLNIAYEFRNLVVASDSRFRERFGSEEQILKLEVVDEQLVDLADGQPSDTFNFESSHSNDNGDAESVICKVKGEAAQPTSSWDNINEESWGQSGVFVQDWSRYGESLEKSPECGRTVKFQSVIGNQKIDQLLTPYLCLTCERGFKQLIQLKLHNLRHLTGKRLICYVCNSKFLDKRHLLRHFRARHATNPKAFPCNFCGKPLKNSRVARKHDEKHRDANYTCAYCEKNFGDEQKFSRHVKIHTSQKRHQCPICGVRFLRKPHMVDHMRTHLGVKPHECRHCDKKFTQKSNLRRHLRSLHSDAESPQTGGYQNSFVKVETGSEVVGVKEEPREGGQCPLCGKRFAARGSLKTHLLIHAGEKPQECGYCGMRFLQKSHLNDHLRIHTGAKPYECRDCDKKFTQKSNLIRHARTHTGQQPLQCSVCGRKFWLKRALELHMRLHGGEGAVEGCDTKFSQILFQCSFCGLKFSQKSFLEDHLKTHGSANQFECGDCGRKFTLKSNLYRHTRTVHEGKKTAEPRKEPDAALFQCPDCGKKFLAKRNFELHLMVHSGETPYKCSDCDMGFLRRNQYEQHIKIHVGVKPYECRDCGKKFTHKSNLARHTKLHASNKLHQCHICGQKFIQKQNLALHVKKHSGVSESGGLGQPPYKCGDCGKTLSTKRSLEFHMTTHSDEKPHSCSICGKSFSRKYYLSDHMKIHIGYKPHKCSKCPKRFIQTSNFKRHLKTHQNSESNKVEEISQGPPFRCCVCSKEFAVERNLTIHMKIHTGQEPYRCPDCDTTFLRRAHYADHMKIHAGVKPYDCRYCGKRFTQKSNLTRHTRLHTNTNYKRHLCHTCGQTFSEKQYLELHIKIHNGETLHKCFHCPRKFANKPRLEAHILRHTDEKSYECPVCGKTLTTKKSLEIHVRTHTGEKPHQCVVCKKSFNRKGYLKYHMRVHSGLKPHQCLHCGRRFGQKSNFRRHLRIHVNEEPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-