Basic Information

Gene Symbol
-
Assembly
GCA_951805265.1
Location
OX638210.1:2867405-2873627[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-07 0.00012 21.9 0.1 9 40 41 71 33 76 0.87

Sequence Information

Coding Sequence
ATGTCCGTGGCTTATATGGTTTCAAATAGAAAAGATAGTAAAATTTGTGagACAATGCCTCGAAGAAATAGTTTGGAGAGAAAGATTGGCAAGCACACCCAGGCCCAGATAGAAACTGGGCTGCAATTAATTCAAAGCGGTTCGAGTATCCGCCAAGCTGCGAAGGAAGTTGGTGTTGCTTTCACGACATTACAACGTTATAAGCAGAAACAAAGGACTGCTGAACCTAATGTGCAGCTCCGTTTAGTTCCTAATTATGCTGTACACAAGGTGTTTTCTGACCAGCacgaagaaattttgaaagcctattacaaaaaatgtgctttattattttacggtCTGTCATCGAAAGATTGTCGCCAAGTAGCCTATCAAATGGCAACGATTAATAATATCAAAATACCACCCAATTGGGAGACGGAGAAGTTGGCGGGGGTTGACTGGTTCCGATGTTTTCGTCAACGGCATCCGGATTTAAGCCTTAGAAAACCGGAGGCTTGCAGCCTGGCCAGGGCAACAGCATTTAATGAAGAGACCGTCAAAACATTTTTCGATAATCTGGAAAAAGTAATCCAGCGTACTCCAGCTTTTGCCGATGGAACTCGGATATACAACTTAAACGAGACAGGGACGACCACAGTGCAGAAACCTCAGAAAGTTATTGGACCAAAAGGGCACAAAAACTTGTGCAAAGTCACCAGCGGTGAAAAGGGAACACTATGCACAACTTGCTGCATTATTAGTGCTAGTGGTCAAGCATTGTCACCTGCAATTATTTTCCCccgaaaaaaagttaatcccAGAATGACTTCTGGGACACCACCTGGAACGCTGATTCTAGCAACACCATCGGGATGGATGACCAGTGAGTTGTTTGTCGGAGTAATGGAACATTTTATCAAGCACAGCCACAGCACGCCGGACAATCCCAGTATTTTAATAATGGACAACCACGAATCACATTTGAGTATTGAGGCGCTTGACTTGGCAAAAAAATCCGGAGTAACTGTCCTTACACTTCATCCTCATACATCAGCAAGAATGCAGCCCTTGGATGTGGGAATTTTCGGCCcgtttaaaagttattatCACAATGCTATGGATTCTTGGTTGATGCGTCATCCAGGTTGCCCAGTTACCATATACCATGTTGGAGAATTGATTGAAATAGCGTTTACGAAGTCAATGACCATTTCCAACATAACTAAAGCTTTCAAGAAAACTGGAATATGCCCATTTGACAGGGATATATTCTCCAGTGATGATTTCTTACCCAGCACAGTGACAGATCGGCCGATTCCAGTCCAGTTGGCAATGCAGTCTGAAAATGTTGACCAAAGGTCAGTTCCTCTAGCTGACGTGTCACTAGCTACTGTTACCGTTGACGATATTGAGTTAACTTCGCCAACACctgaattgaataaaaattcagCCACTACACAACCAGTTCTTAATATGGCGCAGGTTTCACACGATGATGCTGTTGCTGGACCATCCAATTGCAACAAAGAAGACTACGATGAAAAAGCATTGTGTCAAGATTCTGACAATGACAATGATTGGTTTGAAGAAGACGAAGTGGAAATCGATGAAAATGTTTTGACTGAAGAGCGTTTAGAACAACCCTTATTTCGTCAAGCAGAACAAGAAGAATTTGTGCTAGTCCTATTTTGTACTAAAAAGCAAAGGGTTTTCTACACTGCCAAGGTTTTGGAAACTGTGAACGATAATATGGAATATTATGTCAGCTTTCTTAAGGTAGCCACTCACCTACAGGCCGCCTGCAGGCCCCGGCCTGAAGGCGGCTTGACCGCCGGCCAATTTTTACCATACATTAACAGGCCGCCTGCAGGATGTTCATCGGAAGACATCTATATCTCCACTTTATGGTACTACGATTTGCTGTTATTTACAGCAGATCAGGAAGAAAGAAGAGAAACAACATCATCAGTCATTTCGCAAGAGTCTGAAGATGATTCTGATAAATCAGATAATGAGCAACAATTTTGTATGCCAGATGTGCCTGACCTGGCATTTGTCAAGGAACAGGATGTGAAATTCATCCTTCCGAATCCTACAATTAGCGGTACCGCTAGGCGACAgtcttattataaattttcagcCGATCTTTCTCGATTGAAAATTtgctga
Protein Sequence
MSVAYMVSNRKDSKICETMPRRNSLERKIGKHTQAQIETGLQLIQSGSSIRQAAKEVGVAFTTLQRYKQKQRTAEPNVQLRLVPNYAVHKVFSDQHEEILKAYYKKCALLFYGLSSKDCRQVAYQMATINNIKIPPNWETEKLAGVDWFRCFRQRHPDLSLRKPEACSLARATAFNEETVKTFFDNLEKVIQRTPAFADGTRIYNLNETGTTTVQKPQKVIGPKGHKNLCKVTSGEKGTLCTTCCIISASGQALSPAIIFPRKKVNPRMTSGTPPGTLILATPSGWMTSELFVGVMEHFIKHSHSTPDNPSILIMDNHESHLSIEALDLAKKSGVTVLTLHPHTSARMQPLDVGIFGPFKSYYHNAMDSWLMRHPGCPVTIYHVGELIEIAFTKSMTISNITKAFKKTGICPFDRDIFSSDDFLPSTVTDRPIPVQLAMQSENVDQRSVPLADVSLATVTVDDIELTSPTPELNKNSATTQPVLNMAQVSHDDAVAGPSNCNKEDYDEKALCQDSDNDNDWFEEDEVEIDENVLTEERLEQPLFRQAEQEEFVLVLFCTKKQRVFYTAKVLETVNDNMEYYVSFLKVATHLQAACRPRPEGGLTAGQFLPYINRPPAGCSSEDIYISTLWYYDLLLFTADQEERRETTSSVISQESEDDSDKSDNEQQFCMPDVPDLAFVKEQDVKFILPNPTISGTARRQSYYKFSADLSRLKIC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-