Basic Information

Insect: Schizaphis graminum
Gene Symbol: -
Assembly: GCA_003264975.1
Location: QEWZ01000364.1:43872-47789[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0041 0.4 11.7 3.0 3 23 7 27 5 27 0.92

2 12 0.0017 0.17 12.9 2.0 3 23 32 53 31 53 0.97

3 12 0.0013 0.12 13.4 3.3 3 23 64 85 62 85 0.96

4 12 0.00052 0.05 14.6 0.1 3 23 92 114 90 114 0.91

5 12 6.1e-06 0.00059 20.7 3.3 1 23 118 140 118 140 0.98

6 12 0.0073 0.71 11.0 3.0 1 21 143 163 143 164 0.95

7 12 0.00017 0.016 16.1 2.4 1 23 186 210 186 210 0.92

8 12 6.1e-05 0.0059 17.5 2.4 1 23 219 242 219 242 0.96

9 12 2.8e-05 0.0028 18.6 1.6 1 23 249 271 249 271 0.97

10 12 1.5e-05 0.0015 19.4 1.4 1 23 277 300 277 300 0.94

11 12 0.00084 0.082 13.9 0.8 1 23 306 328 306 328 0.98

12 12 0.0012 0.12 13.4 2.2 5 23 337 356 334 356 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0041	0.4	11.7	3.0	3	23	7	27	5	27	0.92
2	12	0.0017	0.17	12.9	2.0	3	23	32	53	31	53	0.97
3	12	0.0013	0.12	13.4	3.3	3	23	64	85	62	85	0.96
4	12	0.00052	0.05	14.6	0.1	3	23	92	114	90	114	0.91
5	12	6.1e-06	0.00059	20.7	3.3	1	23	118	140	118	140	0.98
6	12	0.0073	0.71	11.0	3.0	1	21	143	163	143	164	0.95
7	12	0.00017	0.016	16.1	2.4	1	23	186	210	186	210	0.92
8	12	6.1e-05	0.0059	17.5	2.4	1	23	219	242	219	242	0.96
9	12	2.8e-05	0.0028	18.6	1.6	1	23	249	271	249	271	0.97
10	12	1.5e-05	0.0015	19.4	1.4	1	23	277	300	277	300	0.94
11	12	0.00084	0.082	13.9	0.8	1	23	306	328	306	328	0.98
12	12	0.0012	0.12	13.4	2.2	5	23	337	356	334	356	0.93

Sequence Information

Coding Sequence: ATGCCTGAGAATTACGGTTGTGATCATTGTGAAAAAACATTCACGAATCGTCGACATTATGATCTGCATGTTGACGGTCATTTACGGAACATTTGTCGTGTTTGTGGATTATCTTGCAACAGCCGTAAAATGTTAGTCACTCATATGTCTACAACCCATGGATCTAAATTGGACCCAATTGTGTTGGATTGTAAGTACTGTATGAAAACGTTTGTTCAAAAACGCTCACTGCACTTACATTACAAGACTGTACACAAAAACACGGGTACTATATGTCTCGATTGCGGACAGCCATTTGATACCAAACAAGAACTTGCTGATCATGTAAAAACAATTAAGCACGGTGACGGTTTCATATGTCATAAGTGTGGGGAAGTTTTTACCCGAAACCAAcagtataaattacatttacaaAGGCACGATGCATACTGTTGTTTCAATTGCAATGCACAATTTGCAAATTCCAAAAAGTTGAACAAACATTTGAAATTGTGCATTTCAATACCACCGATCGACaactattctaaaaataaacagtCAACCACAGgtgtTGTTTATGAATGCATCGAGTGTAAAAAGTcgtttgagaaaaaaaaatattataaacgccATATGAAAACAGTAATTCACTCAACTAATAAAGCTGATAATCCATTTTATTGTGCTCATTGTcctagaatattttattataaatttaatttggcaTCACACATGAAAcaagtacattttaaacaatacaataattatgtttgtaatttGTGTGGACGGAGTTTTCAGTATGCGAACAATTATAAAAGGCACAAAGATTCACATATGCAAGTTAGAAATTATGTTTGTGAACACTGTGGTGCTTGTTTTTATCGCAAACAGGCTTTGCAAGATCATCAAATTGCTATACACAATGAAGAAAAGAATTTTGTTTGCAATGTGTGtggtgataattttaaattaaaatccatttTAACAAGGCATATGAAAAATCATTCTGAAACCAAAAAATATGTGTGTCATTGTAaacgtatatttaaatttgcatcAAATTTACGTCGTCATCAAATCAACATCCACAATCAAATATTTACTGACTCTATCAAAATAAAACGCTTTGTTGAAGATATTAGCCGTTCGTCTCCATTGGAAGTCATGAATGAAGAAAAGGAAATACAGAggttgaaacaaaaaaatatcaaccaCCTTAGATTAGAAGACACTGTATCATATTCATTGATGGCGTATCCTGATAACTTAGATTTAAGTAGTGTCGATATAGCAGAAAGTGTACTTCAAGTAGCCTCAGCATCAAATTATAAGATAGAATGTGAAGAAAATTCATGTTTTCCTGGAATTCATCCTCCTATTGAAACATCTCTAGTATGCAGCTTAAATGATGGTGTAGATTTGTCTCCTAATTCTTCACAGCAATACTTATCTGATTATGATGTTCCTCATCAGTTTCCATTTCTGAATATTTGA
Protein Sequence: MPENYGCDHCEKTFTNRRHYDLHVDGHLRNICRVCGLSCNSRKMLVTHMSTTHGSKLDPIVLDCKYCMKTFVQKRSLHLHYKTVHKNTGTICLDCGQPFDTKQELADHVKTIKHGDGFICHKCGEVFTRNQQYKLHLQRHDAYCCFNCNAQFANSKKLNKHLKLCISIPPIDNYSKNKQSTTGVVYECIECKKSFEKKKYYKRHMKTVIHSTNKADNPFYCAHCPRIFYYKFNLASHMKQVHFKQYNNYVCNLCGRSFQYANNYKRHKDSHMQVRNYVCEHCGACFYRKQALQDHQIAIHNEEKNFVCNVCGDNFKLKSILTRHMKNHSETKKYVCHCKRIFKFASNLRRHQINIHNQIFTDSIKIKRFVEDISRSSPLEVMNEEKEIQRLKQKNINHLRLEDTVSYSLMAYPDNLDLSSVDIAESVLQVASASNYKIECEENSCFPGIHPPIETSLVCSLNDGVDLSPNSSQQYLSDYDVPHQFPFLNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01434347;
90% Identity: iTF_00973235;
80% Identity: iTF_01329211;