Sgrm000762.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Schizaphis graminum
Gene Symbol
-
Assembly
GCA_003264975.1
Location
QEWZ01001481.1:146811-161176[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0005 0.048 14.6 3.7 1 23 145 167 145 167 0.98
2 18 3.2e-07 3.1e-05 24.7 0.4 3 23 200 220 198 220 0.98
3 18 4e-05 0.0039 18.1 3.6 1 23 226 248 226 248 0.99
4 18 0.002 0.2 12.7 1.8 1 19 254 272 254 276 0.94
5 18 0.0027 0.26 12.3 3.3 1 23 282 305 282 305 0.94
6 18 6.6e-06 0.00064 20.6 5.8 1 23 311 333 311 333 0.99
7 18 3.4e-05 0.0033 18.3 5.4 2 23 340 361 340 361 0.97
8 18 4e-06 0.00039 21.2 0.9 1 23 367 389 367 389 0.98
9 18 0.0017 0.16 13.0 0.5 1 23 395 417 395 417 0.98
10 18 0.00011 0.011 16.7 0.4 1 23 423 445 423 445 0.99
11 18 0.0096 0.93 10.6 2.7 1 23 451 473 451 473 0.99
12 18 0.00016 0.016 16.2 0.8 1 23 479 501 479 501 0.99
13 18 5.3e-07 5.1e-05 24.0 1.8 1 23 507 529 507 529 0.99
14 18 3.3e-07 3.2e-05 24.7 1.5 1 23 535 557 535 557 0.99
15 18 0.003 0.29 12.2 4.9 1 23 564 586 564 586 0.98
16 18 0.037 3.6 8.8 0.6 1 23 592 614 592 614 0.95
17 18 0.0013 0.13 13.3 0.7 2 23 619 641 619 641 0.97
18 18 0.0013 0.13 13.3 1.3 1 23 646 668 646 668 0.98

Sequence Information

Coding Sequence
atggagcatttaaattcaaaggACAAAAACATTCctatgttcaataaaatattaaaagtatcaCTTGAAAAATGTGATAACCTATTGAAATTTCataatcaacaaaaaattaaagaagaaaCTTTTGAATTTGAAGATTCAGAAATCACTATTGAAGAAGACGATGTTCTcaaaaaaatCAAACAGGAAGACAATGATGTTAATATTCATCCTATTTCAATAATAGAACAACAAAATGTTCATACAAATAATGAGCAAGGATTGATTCCTTCAAAttCTAATTCTAACGAAAATGATGTCACTGCTATCAGTAATAGTGTAAAATATGAAGTTGACTATATTGATAATGTGGTATATAGTAGCATTATCGAAATTGAACCTGTAAGTACACAGTTAATGTCAAATGATAGCGAATCTGAGGAGGAAAAATCGTACAATTGTCATATCTGTGAATCATCATTTTCAACAAACCAAGATTTTGAAAACCATAAGAAATCacataatgaaaatgaaaaaactgAAAATCCTCAAACATTTTCTGAAGAATTAGATGTAAATAGCCCCAATGAAACACCCGAGCAGAAAATAACTTATGGCTGCGAATATTGCAATAAGGTTTTTAGTGCTAAATCGAATTTAACGGTACACATAAGATCACATACTGGGTTAAAACCATACACATGTGATATGTGTCAAAAAGCTTTTGCTCagaaacaaaatttaatgtGTCATATGAGAAAACATACTGGATATAAACCTTATACGTGTagcatttgtaatataaaatttggtcATAAGTCATTATTAAACTACCATGAATGGAAACACACTGGTGTTAAACCATTTAAATGCGAAATTTGTGTTAGAGAATTTTCTCGAAAATCAAGTTTAGTTTTTCATCAAAAACATAGCCATACaggtgaaaaaaattttaaatgtcatctctgtaatgaaacattttatcgaaaaacttttttgaaaaatcatatGCGAGTCCACAATACTTTACAATTAGAAGAATGTCATATTTGTGAGAGAAAGTATTCTCACAAATCAAGTTTAAAAAGACATTTGTTGAGCCATGCTGgtgaaaaaatgtttgaatgcGCAATGTGTAAAAAGTCCTTTTATCGGAAATTTAGTTTAGTTGCCCATATAAAAGTTCATATGACAGAAAGACCTTATGAATGTAATCTTTGCAGATCAACATTTATTACAGCATCAGAACTAGATAGTCATTCAAAATCTCATACTGTTGATAAACCATTTCAATGCCAGCTCTGTGACTCAAGTTTTATAATCGAATCACTTTTGAATATGCATATGAGATCTCATACTGGAGATCGGCCATATCAATGCCCTCATTGTTTAGTGACATATGCACAAATGAAAAGTTACTCTTACCATTTAAAAACTCACAGAGATCATAAATTGTATAGATGTGATTTGTGTAAGGCAACactttttcaaaaaagtaagtTAATTGATCATATGAGAATACATACTGGTACAAAACCTTTTAAATGTTCTGTTTGTGATAAGAGATTTATGCAAAAAGATGTTTTACAATCACATATGAGAACTCACaatgttgaagaaaaatttaaatgtgatatgtgtgaaatttattttagtcaaaaatcaaatttgattaaacatattaaaacacATCCTGCcttcaaatcaaattttaagtgtaggttttgtaaaacaaaatttttacaaaaatctaATTATATGAATCATATGAAAATTCActctaaaaatgattttcataAATGTGGCATTTGTGGTATTTCTTTTCTACTGGAAACTGACATGAAAAAGCACGagataacacataatataattgaaaagtGTAATATTTGTGATCAATCTTTCCCTTCAAAAATGGCACGTATAAATCATGAAAGAAGATATCATACAAATGTAGTATATCAATGTTTTATCTGCTGGaaattgttttatcaaaaaatacaaatatcacGTCATATCAAATTGCACATGAAGAATATGTCATctaaatgtatacaatgtaaAGAATCGTTGTTAAAAAAACCTATTTCAGTTAAGGAATTAAGAGCCATAACTggaaatagaaaaaatgtatgcGATGTGTGTTCCGTCATCTTCTAA
Protein Sequence
MEHLNSKDKNIPMFNKILKVSLEKCDNLLKFHNQQKIKEETFEFEDSEITIEEDDVLKKIKQEDNDVNIHPISIIEQQNVHTNNEQGLIPSNSNSNENDVTAISNSVKYEVDYIDNVVYSSIIEIEPVSTQLMSNDSESEEEKSYNCHICESSFSTNQDFENHKKSHNENEKTENPQTFSEELDVNSPNETPEQKITYGCEYCNKVFSAKSNLTVHIRSHTGLKPYTCDMCQKAFAQKQNLMCHMRKHTGYKPYTCSICNIKFGHKSLLNYHEWKHTGVKPFKCEICVREFSRKSSLVFHQKHSHTGEKNFKCHLCNETFYRKTFLKNHMRVHNTLQLEECHICERKYSHKSSLKRHLLSHAGEKMFECAMCKKSFYRKFSLVAHIKVHMTERPYECNLCRSTFITASELDSHSKSHTVDKPFQCQLCDSSFIIESLLNMHMRSHTGDRPYQCPHCLVTYAQMKSYSYHLKTHRDHKLYRCDLCKATLFQKSKLIDHMRIHTGTKPFKCSVCDKRFMQKDVLQSHMRTHNVEEKFKCDMCEIYFSQKSNLIKHIKTHPAFKSNFKCRFCKTKFLQKSNYMNHMKIHSKNDFHKCGICGISFLLETDMKKHEITHNIIEKCNICDQSFPSKMARINHERRYHTNVVYQCFICWKLFYQKIQISRHIKLHMKNMSSKCIQCKESLLKKPISVKELRAITGNRKNVCDVCSVIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-