Basic Information

Insect: Schizaphis graminum
Gene Symbol: -
Assembly: GCA_003264975.1
Location: QEWZ01001592.1:101359-106932[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0024 0.23 12.5 3.8 2 23 91 112 90 112 0.95

2 27 1.1e-05 0.0011 19.8 0.2 1 23 147 169 147 169 0.98

3 27 1.6e-06 0.00016 22.5 0.4 1 23 175 197 175 197 0.97

4 27 2e-05 0.0019 19.1 0.7 1 23 203 225 203 225 0.98

5 27 0.00022 0.021 15.8 6.2 1 23 231 253 231 253 0.98

6 27 7.4e-06 0.00072 20.4 0.5 1 23 259 281 259 281 0.98

7 27 1.1e-05 0.0011 19.8 1.7 1 23 287 309 287 309 0.98

8 27 0.00061 0.059 14.4 1.2 1 23 315 337 315 337 0.98

9 27 4.8e-05 0.0046 17.8 0.9 1 23 343 365 343 365 0.98

10 27 1.7e-08 1.6e-06 28.7 1.9 1 23 371 393 371 393 0.98

11 27 2.3e-07 2.3e-05 25.1 1.8 1 23 398 420 398 420 0.98

12 27 1.8e-06 0.00018 22.3 0.8 1 23 426 448 426 448 0.98

13 27 2.4e-07 2.4e-05 25.1 0.6 1 23 454 476 454 476 0.99

14 27 0.0055 0.53 11.4 0.9 1 23 482 504 482 504 0.98

15 27 1.1e-05 0.0011 19.8 2.6 1 23 510 532 510 532 0.98

16 27 0.0034 0.33 12.0 3.0 3 23 540 560 538 560 0.98

17 27 2e-05 0.0019 19.0 1.4 1 23 566 589 566 589 0.97

18 27 1.1e-07 1.1e-05 26.2 1.9 1 23 598 620 598 620 0.99

19 27 0.00057 0.056 14.4 3.0 1 23 626 648 626 648 0.98

20 27 0.0022 0.21 12.6 4.2 1 23 654 676 654 676 0.96

21 27 3.6e-05 0.0035 18.2 0.5 1 23 682 704 682 704 0.98

22 27 1.3e-06 0.00013 22.7 2.1 1 23 714 736 714 736 0.99

23 27 2.8e-07 2.7e-05 24.9 0.3 1 23 742 764 742 764 0.99

24 27 0.0011 0.1 13.6 5.7 1 23 770 792 770 792 0.98

25 27 0.014 1.4 10.1 6.4 1 23 798 821 798 821 0.97

26 27 1.7e-05 0.0016 19.3 3.1 1 23 826 848 826 848 0.98

27 27 4.6e-06 0.00045 21.0 2.5 1 23 854 876 854 876 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0024	0.23	12.5	3.8	2	23	91	112	90	112	0.95
2	27	1.1e-05	0.0011	19.8	0.2	1	23	147	169	147	169	0.98
3	27	1.6e-06	0.00016	22.5	0.4	1	23	175	197	175	197	0.97
4	27	2e-05	0.0019	19.1	0.7	1	23	203	225	203	225	0.98
5	27	0.00022	0.021	15.8	6.2	1	23	231	253	231	253	0.98
6	27	7.4e-06	0.00072	20.4	0.5	1	23	259	281	259	281	0.98
7	27	1.1e-05	0.0011	19.8	1.7	1	23	287	309	287	309	0.98
8	27	0.00061	0.059	14.4	1.2	1	23	315	337	315	337	0.98
9	27	4.8e-05	0.0046	17.8	0.9	1	23	343	365	343	365	0.98
10	27	1.7e-08	1.6e-06	28.7	1.9	1	23	371	393	371	393	0.98
11	27	2.3e-07	2.3e-05	25.1	1.8	1	23	398	420	398	420	0.98
12	27	1.8e-06	0.00018	22.3	0.8	1	23	426	448	426	448	0.98
13	27	2.4e-07	2.4e-05	25.1	0.6	1	23	454	476	454	476	0.99
14	27	0.0055	0.53	11.4	0.9	1	23	482	504	482	504	0.98
15	27	1.1e-05	0.0011	19.8	2.6	1	23	510	532	510	532	0.98
16	27	0.0034	0.33	12.0	3.0	3	23	540	560	538	560	0.98
17	27	2e-05	0.0019	19.0	1.4	1	23	566	589	566	589	0.97
18	27	1.1e-07	1.1e-05	26.2	1.9	1	23	598	620	598	620	0.99
19	27	0.00057	0.056	14.4	3.0	1	23	626	648	626	648	0.98
20	27	0.0022	0.21	12.6	4.2	1	23	654	676	654	676	0.96
21	27	3.6e-05	0.0035	18.2	0.5	1	23	682	704	682	704	0.98
22	27	1.3e-06	0.00013	22.7	2.1	1	23	714	736	714	736	0.99
23	27	2.8e-07	2.7e-05	24.9	0.3	1	23	742	764	742	764	0.99
24	27	0.0011	0.1	13.6	5.7	1	23	770	792	770	792	0.98
25	27	0.014	1.4	10.1	6.4	1	23	798	821	798	821	0.97
26	27	1.7e-05	0.0016	19.3	3.1	1	23	826	848	826	848	0.98
27	27	4.6e-06	0.00045	21.0	2.5	1	23	854	876	854	876	0.98

Sequence Information

Coding Sequence: ATGGAACAGTCAAGAACAAGCATTGGTAATTCTGCGATAAATTTAAAAACTATTAAACAAGAATTTATTGATGAAACCAaccataataatgataaattagtacaattaagaACTATTTGTCCTAAGGAAAAAGTAAATACAAATGAtgctgaaattaaaattgaaaaagatGTTATTGAGAATTGTGAATTTGAAGGAATGATTTCAATTAAAAGCCACTCTTTAGAAATCATTAATCGTTTGAATTCCAGAAAGAGATCCAAAACTTTAACATGCAAAGTGtgtaataagatattttataattcatataaatttaaactccATAAGAAATTTCATACTGGAGATAATTCTCAGAAACGCAACATTTGTAGTAAAccattaaaagtaaaaacagaTCTCATAACATGTGTAAAGATTTATTCAGGAGAAACGCGGCAATACACATGTGATGTTTGTCAGAGAGCTTTTAAGGTAAAAACAGATTTGGCAAGACATGTGATGATTCATACAGGAGAAAAACCCTTCAAATGTAATGTTTGTCCTAAAGCTTTTATTAGATCAACTGATCTAAAGTACCATATGGTGATTCATAACAGGGACAGTCCTCACAAGTGtgatgtatgtaaaaaaatatttgctatgGCAAGTAGATTAAAAGCACATATGATGATTCACTCTAATAACAAGCCTTATAAATGCATTATCTGTGGTTGGGCATTTTGTCAATCACATCATTTAAAAGAACATAAAAGGACTCACACCGGTGAAAAGCCTTTCAAATGTGATGTTTGTGATAAAGCGTTTGCTCTATCTTCTTCTCTGACATTGCACAAGAGACTTCATACAGGTGAAAAAccttataaatgtaaaatatgtaattatagatATTCTTCATCTTCAGCCTTATCAATTCATAAAAGACTTCATAGCGGAGAAAAGCCATTTAAATGTGACATATGTCATCAAGCATTTGTTCAAAGTTCAATTCTCAAATTGCATAAAATGATACATACTAAGGAAAAGCCTTTTAAATGCAACATCtgtttgaaaacatttattaataaaacaagtaTCGAAATTCATATGAGTTCTCATACTGGATATCTGCCTCACAAATGTAATGTTTGTAATAAATCGTTTGCttcgaattcaaatttaaacattcatATGAGAATACATTCTGGAGCAACTTATGAATGTGACATttgtaaaaaatcattttatacaaaatcaaaattgaaaactCACATTATGATTCATACAGGAAACAAACCTTACAAATGCATGGTCtgtttcaaaacatttattacaaattcAGAACTTAAGGCTCATCAATTAGTTCATACAAGAGAAAAGCCATTTAAATGTGATATCTGTCCTAAAGAATTTGGTAGATCAAGCCAACTTAAGTACCATATGATGGTTCATAATGGAGAATTTCCTTATAAATGTGATGTATgtgcaaaaaaatttttacaacgCTCaagattaaattatcatatggtTGTTCATTCTGCAAACATGCTTTATACATGCAATATCTGTGATAAAGGAtttaaacaattgaataattttaaactgcATAAAATGAAACATTCCAATGAAAAGCCTTATGGATGCAAACTATGTAATTATAGATGTACTACATCTACAGCTCTAAACATCCATAATAGAACTCACACCGGAGAAAAACCCTATAAATGTGACAAATGTGATCAAGCATTTATTTCAAGTTCATATCTGGCTTCTCATAAGAATAAGAAACATACAATTCATCCTGAGAATAAGCCTTATAAATGCACTATCTGTGATAAAGCATTTTCTCAAGCTGtacatttaaaaacacataCTAGGATACATACTGGTGAAAAGCCTTATGAATGCAAACAATGTAATTATAGATGTACTACATCTGTGGCATTAACAATTCATAATAGATCTCATACTGGGGAAAAGCCTTTTGCatgcaaaatatgtaattataaatgtagtaCACTTTCAACTTTAAAAGTACATAACAGATTTCATACAGGAGAAAGACCTTATAAATGTGACATATGTAATCAAGCATTTCCTATGAATGCAAATCTAAAATTGCATAAAAAGCAACACTTAAATATTCGTCCTGAAGACAAGCCTTATAAATGCAGTATCTGTGATAAAGCATTTTTCCAAGCTGTACATTTAAAATCACATACTAGGATACATACTGGTGAAAAGCCTTACAAATGTGAAGTTTGTGATAAAGCAATAAGAACATCGTCTTCTTTAAAAGTGCATATGAGAATTCATACAGGTGAAAAGCCTTATGAATGTAATAGGTGTAATTATAGATGTACTACATCTTCGTCATTAAAATCTCATAACAGACAACATACTGGTGAAAAGCCTTATGAATGCAAAACATGTGATTTCAAATGTTCTACATatcaaaatttaacatatcataCTAATAGATTTCATACTGGAGGGCCTTacaaatgtaaattatgtaatcAAAATTTTGTGTCAAGTTCAACTCTAAAgagacataaaataaaacatgttaaGAAACAGTCTTTTAAATGCGATACTTGTTCTAAAACATTTACCAATAAATCAAGTATAAGAATTCATATGAGTTCTCATGTTGAATTCCAGTTTAAATAG
Protein Sequence: MEQSRTSIGNSAINLKTIKQEFIDETNHNNDKLVQLRTICPKEKVNTNDAEIKIEKDVIENCEFEGMISIKSHSLEIINRLNSRKRSKTLTCKVCNKIFYNSYKFKLHKKFHTGDNSQKRNICSKPLKVKTDLITCVKIYSGETRQYTCDVCQRAFKVKTDLARHVMIHTGEKPFKCNVCPKAFIRSTDLKYHMVIHNRDSPHKCDVCKKIFAMASRLKAHMMIHSNNKPYKCIICGWAFCQSHHLKEHKRTHTGEKPFKCDVCDKAFALSSSLTLHKRLHTGEKPYKCKICNYRYSSSSALSIHKRLHSGEKPFKCDICHQAFVQSSILKLHKMIHTKEKPFKCNICLKTFINKTSIEIHMSSHTGYLPHKCNVCNKSFASNSNLNIHMRIHSGATYECDICKKSFYTKSKLKTHIMIHTGNKPYKCMVCFKTFITNSELKAHQLVHTREKPFKCDICPKEFGRSSQLKYHMMVHNGEFPYKCDVCAKKFLQRSRLNYHMVVHSANMLYTCNICDKGFKQLNNFKLHKMKHSNEKPYGCKLCNYRCTTSTALNIHNRTHTGEKPYKCDKCDQAFISSSYLASHKNKKHTIHPENKPYKCTICDKAFSQAVHLKTHTRIHTGEKPYECKQCNYRCTTSVALTIHNRSHTGEKPFACKICNYKCSTLSTLKVHNRFHTGERPYKCDICNQAFPMNANLKLHKKQHLNIRPEDKPYKCSICDKAFFQAVHLKSHTRIHTGEKPYKCEVCDKAIRTSSSLKVHMRIHTGEKPYECNRCNYRCTTSSSLKSHNRQHTGEKPYECKTCDFKCSTYQNLTYHTNRFHTGGPYKCKLCNQNFVSSSTLKRHKIKHVKKQSFKCDTCSKTFTNKSSIRIHMSSHVEFQFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -