Sgrm010731.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01003380.1:5565-7406[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-08 1.9e-05 24.8 0.0 4 38 21 55 19 60 0.94 2 2 7.1 4.4e+03 -2.0 0.0 21 29 298 306 297 307 0.90
Sequence Information
- Coding Sequence
- ATGCCAAAAGTATATAAGCCAGATCCGCGCGGCAAGCGTTATCAAAAACCTAACAAATCTGATTTAGCTAATGCTGTTTCTGCTGTCAAACTCAAGAAGATGTCCTACAGAGAAGCTGAGTCAGTTTACGGTATCAATCATTCAGTTATTTACAGACATGTTAAAAACCCGGAGATCAAAACACATGGAGGCCAAACATCACTTTCTAAAGAAGAAGAGAATTTAATTGTATCAGGTATTTTGTTGTGCGCTGAATGGGGTTATCCGTTTGGCAGATTCGATTTAAGATTATTAGTTAATGGATATCTTGAACGCCGGGGAAAAAaggttaaaaagtttaaaaatggtaCTATGCCTGGTCGAGATTGGGCAGATAGTTTTCTCACcagacataaaaatattttagccgTTAGAATGTGTCAGAATATAAAACGTTCTCGTGCTAGTGTTTCAAGAAGTACAATCAATTCATATTTTGATAACCTTACAAATTCACTTGATGGTGTACCACCAtctaacatattaaattacgaTGAAACAAACTTAACAGATGACCCTGGTCgtagaaaaattataactaaacgTGGTACAAAATATCCAGAAAGGGTAATAAATAGTAGTAAAACATCAAATTCTGTCATGTTTGCTGGTACGGCAGATGGTATATTGCTCCCACCTTTTACTGTTTATAAGGCAAAAACAATATCTGACAGTTGGCGCTTAGGTGGTCCAAAAGGATCAAGATATGCATCAAGCCATTCTGGATGGTTTGACAGTTACTCATTTGATGACTGGATTAAAAGTATTGCTATACCATACTTGAAAAAATTACCTGGGAGAAAGATATTAATTGGTGACAATTTATCCAGTCACATTTCAATGGAATCAATTAAAGCTtgtaaagaacataatatttcatttgtttttttaccTGCAAACTCTACCCATCTTACCCAGCCACTTGATGTTGCCTTTTTTAGGCCACTGAAGTGTCATTGGCGTATTATAATGGAAAACTGGAAAAATGGGGATGGAAGGAATGAGTGTTCGGTGCCTAAAGATCGGTTTCCACGACTTCtcaatattttgatgaaaaaaatatcagaaaactgtgctaataatttaaaatcgggTTTCGAAAAATGTGGAATATACCCTCTAAATCGTGACAAGGTATTAAATATGTTGCCAGTAGAATATGATGACCCAGATGTTTCTGATCATGTCAACAGTAGTTTAacagaatttttaaaaactatgagAAGTACTGAAACAACAAATGTGCgtcaaaagagaaaaaaattgaatgttcAACCAGGACAAAGTGTTGAGGTTGTGAGGAGTTCTAACTATAATCAATCTGATTCTTCCAGTACAGTTGACCAACCAGAAGATATTGTTGATTCTATGATATCCCCAGAAGTAATTTCAGATGATAGCTCAGATGAAGAAGATGATGGTGATGTAAATATTGAGATTTTACCacatgttataaaatacaatcaacGTTTTGACAATGTCCATCCTATTTCTCAAATGACTGATGTAAAAGATGGAATGTGGTTACTAGTTAGTTTCGAGATCATATCAAAAAAAGCAACAACTAGTaagaaaatgtataagtattatatttgtaaagttttaaaatgtgatCATGGTGAGTTCATTGGTACATTTTTAAGAAACATCAACACAAGAGACCATTTTGGATTTATATATGGGTTCCCAAATGTTACAGACGAATTTACATTTAGTTTCTTCCAAATAGTTGGTAAGCTGAATGACCCTGAACCATATAAAAgaggtttatttaaatttcaaattaactacaaattattataa
- Protein Sequence
- MPKVYKPDPRGKRYQKPNKSDLANAVSAVKLKKMSYREAESVYGINHSVIYRHVKNPEIKTHGGQTSLSKEEENLIVSGILLCAEWGYPFGRFDLRLLVNGYLERRGKKVKKFKNGTMPGRDWADSFLTRHKNILAVRMCQNIKRSRASVSRSTINSYFDNLTNSLDGVPPSNILNYDETNLTDDPGRRKIITKRGTKYPERVINSSKTSNSVMFAGTADGILLPPFTVYKAKTISDSWRLGGPKGSRYASSHSGWFDSYSFDDWIKSIAIPYLKKLPGRKILIGDNLSSHISMESIKACKEHNISFVFLPANSTHLTQPLDVAFFRPLKCHWRIIMENWKNGDGRNECSVPKDRFPRLLNILMKKISENCANNLKSGFEKCGIYPLNRDKVLNMLPVEYDDPDVSDHVNSSLTEFLKTMRSTETTNVRQKRKKLNVQPGQSVEVVRSSNYNQSDSSSTVDQPEDIVDSMISPEVISDDSSDEEDDGDVNIEILPHVIKYNQRFDNVHPISQMTDVKDGMWLLVSFEIISKKATTSKKMYKYYICKVLKCDHGEFIGTFLRNINTRDHFGFIYGFPNVTDEFTFSFFQIVGKLNDPEPYKRGLFKFQINYKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01433013;
- 90% Identity
- iTF_01433013;
- 80% Identity
- -