Sgrm013790.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01006025.1:15222-16036[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-08 1.4e-05 25.3 0.0 4 44 18 58 15 59 0.90 2 2 5.1 3.2e+03 -1.5 0.0 3 14 158 169 158 183 0.83
Sequence Information
- Coding Sequence
- ATGGTCAGAAATTATGTCAAAAAATCAACTAGAGGTTCATGGTCTAAGAGTGATTTAATCAAAGCAATAAATGAAGTAATGCTTAACACTATTTCTTGCAATTCTGcagcaaataaatttaatatacctgaGGCAACATTACGTCgatacataaatttaaagttaaagAAAATGCCAATGCCTGTTAATGGAGGTCGTTTCAAAAATACATTCTCTACAGACCAATtagattcattaaaaaaatatgtttgtgacATCGAGAGAAGGGCATTCGGTCTGACCATAGTTCAATTGCAAAAACTTGTGTACAACTTTGCagaaactaataatattgatcaccgttttaacaataaattaaaaatggctGGAAAAGATTGGTGCTACAAATTTATGCAAGAATCTGGATTCAGTTTTAGAACACCTGAAGCTACCTCTATTGGTCGTctaatgtgttttaataaaacaaatgtggAAAAGTTTTTTGAAGCATTAAAAGACATTCGAACTCATAAGCATTACCAAgctcatcaaatatttaatgtggATGAATCTGGATTATCAACAGTTCCTACAAAACAACCAAAAGTTATCTCCCCAGTTGGTGTAAAAAGGGTTGCTAAAGTTGTATCAGCTGAACGTGGTAAGAGTATTACTGTGGTTTGTGCAATTAATGCGTTGGGTAGTTATATGTATACCACCATTTTTTATATTCCCACGAAAACGTTTGCGTCCTGA
- Protein Sequence
- MVRNYVKKSTRGSWSKSDLIKAINEVMLNTISCNSAANKFNIPEATLRRYINLKLKKMPMPVNGGRFKNTFSTDQLDSLKKYVCDIERRAFGLTIVQLQKLVYNFAETNNIDHRFNNKLKMAGKDWCYKFMQESGFSFRTPEATSIGRLMCFNKTNVEKFFEALKDIRTHKHYQAHQIFNVDESGLSTVPTKQPKVISPVGVKRVAKVVSAERGKSITVVCAINALGSYMYTTIFYIPTKTFAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -