Sgrm014183.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01006461.1:14396-16398[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-11 7.8e-09 35.6 0.0 5 43 19 57 18 59 0.95
Sequence Information
- Coding Sequence
- ATGGTTAGAAATTATGTACGTAAAAGTCAACGCCAATCATGGTCTTTAATATCAATGAATAAAGCTGTAGATGAAGTAATTAATAAGACTATGACTTATAGAGAAGCTCAAGATGCCTATGAAGTTCCCAGGAGTACACTATTAAGAATGaaaaaagaaaatacagaagtattaaaagtaaatatggGTCCTATAATTACAGTATTTTCTGTTAATGAAGAAAAAGAATTAGTCGCTTACCTCAAATTAATGGAAGGAAGACTTTTTGGTCTAAGTTCGGGGGATTTTAGAAAACTGGCCTACCAACtcgcaattaaaaataataaaaatcataattttaataatgataaaaaagaaGCTGGTTATGACTGGCTCAAAGGATTTTTAAAGAGGCATTCAGACTTATCACTTCGAGTACCAGAAAAAACATCAGCAGCCAGAGCTATGGGTTTCAACAAACCAGTGGTCACAACATTCTTTCGTTTGTTGGGTGAAGTGCttgataaatacaaatttcaatcagatagaatttttaattgtgATGAAACGGGAATTAGTAATGTGCCAAAATCCAAATCCAAAATCTTAGCCTCAAAAGGTCGTAAACAAGTTGGATCTTTAACATCAGCAGAACGAGGACAAACAGTAACCGTCGAACTCTGTGTAAGTGCTTCAGGCATCTATATGCCCCCCATGATGATATTTCCCAGAGTACGTACAAATTTGGAATATCTACGCAATTGTCCACCAGGGTTTACAGCTGAATTCCATCCATCAGGTTGGATGCAaactgatatattttatagatggcTAGAAAAATTTATTCAGTTTACTCATGCTTCTAAGAATAATCCAGTTCTGTTATTATTAGATGGTCATGCAAcacatactaaaaatataaatttgatagaTTTAGCTAGAGAAAATGGTGTTGTGATGTTATGTTTTCTTCCTCATTGCACACACCGTCTACAGCCTTTGAATGTTGGAGTGATGAAACCAATATCTACTTATTATGACACAGAAGTCACCAATTGGTTAAGATCGAATACACCAAAAGTAGTAACCCTAAAAGACATCGGAGAAATATTTGGAAAGGCATTTATGAAAGCAGCAACAATGTCAACAGCAATTAATTCCTTTAAGAAAACAGGTATTTTTCCATTTAACGATAATGTTTTTGAAGATTCTGATTTTATGCCAGCTGAAACcacaaatatacctataactgaAATTCCTCCTGAGTCCCTGAACTCTGCAACCATTATACCATTCAAAAGTGATCCTAAAAATACTGACCCTTTACCTAGTTGTTCAAACGCTCCTCAAATGAAAGTATCAGATGGAACAGTATTTGAACATGTATCACCTAAGGATGTTATGCCTATTCCACAAAGGTCAAATGAAGAAAACTCAATTCTAAAAAGAAAAAGTTTAAACAGAGGAAAAACAGTTATTCTTACGTCATCGCCATACAAAAATGAGCtggaaacaaaaacaaaaattagcgAACCTGAGGTAAAAAGGAAATTGTTTAAGAGAAACCCAGTTAAATCAACCACGAATAAGAACAAGAAAAAGAGGGTTAAATTATCCAcagataatgatgatgatatttATACAGAATGCTTGTATTGTGGACATACATATGCTGAATCCAATGAAGGCTGGATTTGTTGTCAGATATGTGAGAAATGGGCTCATTTGTCATGTTCTGGGAAGGACGATGAAGGAAACATCACATTCACTTGCgaaaattgtttgtaa
- Protein Sequence
- MVRNYVRKSQRQSWSLISMNKAVDEVINKTMTYREAQDAYEVPRSTLLRMKKENTEVLKVNMGPIITVFSVNEEKELVAYLKLMEGRLFGLSSGDFRKLAYQLAIKNNKNHNFNNDKKEAGYDWLKGFLKRHSDLSLRVPEKTSAARAMGFNKPVVTTFFRLLGEVLDKYKFQSDRIFNCDETGISNVPKSKSKILASKGRKQVGSLTSAERGQTVTVELCVSASGIYMPPMMIFPRVRTNLEYLRNCPPGFTAEFHPSGWMQTDIFYRWLEKFIQFTHASKNNPVLLLLDGHATHTKNINLIDLARENGVVMLCFLPHCTHRLQPLNVGVMKPISTYYDTEVTNWLRSNTPKVVTLKDIGEIFGKAFMKAATMSTAINSFKKTGIFPFNDNVFEDSDFMPAETTNIPITEIPPESLNSATIIPFKSDPKNTDPLPSCSNAPQMKVSDGTVFEHVSPKDVMPIPQRSNEENSILKRKSLNRGKTVILTSSPYKNELETKTKISEPEVKRKLFKRNPVKSTTNKNKKKRVKLSTDNDDDIYTECLYCGHTYAESNEGWICCQICEKWAHLSCSGKDDEGNITFTCENCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01432990;
- 90% Identity
- -
- 80% Identity
- -