Sgrm011529.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- -
- Assembly
- GCA_003264975.1
- Location
- QEWZ01001157.1:5695-6359[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-12 1.7e-09 37.7 0.0 5 44 37 76 33 77 0.92 2 2 3.7 2.3e+03 -1.1 0.0 2 15 88 101 87 105 0.78
Sequence Information
- Coding Sequence
- atGATTCAAATCATaccgtgttatattattttcgtgtaTTATGTTtggttcgtgtgtacaaaaaaaaaagttggcaGTCGCCCATATGCCAATACAACAGATGAAGTTGTGGAAGAAGCTCTTAAAAAAGTTGTTGATGgtgaaatttcaattttaaaggctagtaaaatatataaaattccgTATGACACATTACACAATCGTTTCACTGGGAAATATGGCAAAAAACCTGGAGGACAGTCAATATTTAGTGATAAGGATGAAAAGAATATGATAGCTGCTGTATCAAAGTGTGataAAGGAGAAATAGAAGTTAAAAAATGTCGTGATAACCTCCCAGGTGATGATTGGGcaagaaatttattaaaaagacaTAATGCACTGACCGAAAGAATTActaattctttatttaataaaataacttaa
- Protein Sequence
- MIQIIPCYIIFVYYVWFVCTKKKVGSRPYANTTDEVVEEALKKVVDGEISILKASKIYKIPYDTLHNRFTGKYGKKPGGQSIFSDKDEKNMIAAVSKCDKGEIEVKKCRDNLPGDDWARNLLKRHNALTERITNSLFNKIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01328529;
- 90% Identity
- -
- 80% Identity
- -