Sgrm025747.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- bab2
- Assembly
- GCA_003264975.1
- Location
- QEWZ01001528.1:294898-304671[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-11 2.3e-08 34.1 0.0 2 38 560 597 559 602 0.89 2 4 3.3e-11 2e-08 34.3 0.1 2 39 614 651 613 654 0.94 3 4 5.5e-16 3.4e-13 49.6 0.0 3 45 670 713 668 713 0.97 4 4 1.6e-16 1e-13 51.3 0.1 1 43 720 763 720 765 0.96
Sequence Information
- Coding Sequence
- ATGACACTTAATGGCCAGCACTACTGTCTGCGATGGAACAATTACCAATCAAATATGACCTCTGTGTTTCACCAGCTTCTTCGAAATGAATCGTTTGTTGATGTTACTCTTGCTTGCAATGAGAGCACGCTCAAAGCACATAAAGTGGTCTTATCGGCTTGTTCGTCTTACTTCCAAAAATTATTGATGGATAACCCATGTAAACATCCAACCATTATATTGCCTTATGATGTTTGTTTTAACGATCTCAAGTTCATTATAGAGTTTGTATATAGGGGCGAGATTGATGTGTCTCAAGCAGAATTGCAATCTCTTCTGAAGACAGCAGACCAGTTAAAGATTAAAGGACTATGTGAAGTGCCTGAAGATGAACGTGATACATCTATTGTGGCCGAAGTAACTCCTTTGGGGCCATTAAAAAGTGGTGGAAGAGTGTTCACAAAATTACAACGCAGAACTTCTCcctattcaaaaaaattgagtcCTAATCAAATTCAGCAGGATCAGTGTAATCGAAATTATTATCGAATTGAACAATCAGGTTTTGCTCCTATTAGTGTTGATCAAGAAAACAAatctataaatACTATCCATTGCATGACTGTAGCAACATCAACTGAAGATGATGAGAAAGAAATTAAGTCAACACTAACAGATTTACCGGTGGTCATACTAGAACCACATCCTTCATTAAATTTACAAGCCCAACAACAGCCTCAGATAGTACACATACCAATACCACCATcacagcagcaacagcagcaacaacaacaacaacaacaacaacaacaacaacaacaactgaGTCATGTAACACAACATACAAATCAACCACAGTTACAACAAGCATCAGTTCAAACTCATTCACAAATGATTATCACAACAGGTCCAGTTATGACAGTGAATGAAGCTGATATTTCACCTGATATACAGCCTGTTGGGCCAAGGGCAACACCAGTACcagttaaaaataacacaagTCCTTCATCAACACCTACACATAGAGATATGGCTGTTGGTACAACATGTTCAAATGATATGATGAGAAGTGATGGAAGTGAGAGAAAATTTGAAAGTGCTAAATTTGAAACACTTCGTACCATTGATCAGTCATCNNNNNNNNNNcaacaacaacaacaacaacaacaacaacaacaacaacaactgaGTCATGTAACACAACATACAAATCAACCACAGTTACAACAAGCATCAGTTCAAACTCATTCACAAATGATTATCACAACAGGTCCAGTTATGACAGTGAATGAAGCTGATATTTCACCTGATATACAGCCTGTTGGGCCAAGGGCAACACCAGTACcagttaaaaataacacaagTCCTTCATCAACACCTACACATAGAGATATGGCTGttggtACAACATGTTCAAATGATATGATGAGAAGTGATGGAAGTGAGAGAAAATTTGAAAGTGCTAAATTTGAAACACTTCGTACCATTGATCAGTCATCAGATGCAATTGGAATAGAAAGACAACATTCTAATgatcgtAATATAAATGATGAAGACAATTCAATGCATACAATGATGATAACACCCGAACTTTTGGGATTATTACCAAATTCTACTAATGCAGGAGatGTCAGTGAAGATAGTTCTagtaacaatattaacaaacaGTATGGTACAAATAGTGGAAAAGGATGGACAGCTGATGACATGGAAAACGCCTTAGAAGCATTACGTTCACATAATATGTCTTTAACGAAAGCATCTATAACATTTGGAATTCCTTCTACAACATTATGGCAGCGGGCTCATCGAGCTGGTATAGATACTCCTAAAAAAGATGGACCTGCTAAATCTTGGAACGATGAAGCTTTAAACATTGCATTAGATGCTCTGCGCACTGGCACTATTTCAGCAAATAAAGCTAGTAAAGCATATGGTATACCTAGTAGTACATTATATAAGATTGCGCGGAGGGAAGGAATTAGATTAGCTGCTCCATTCAATGCAGCACCAACTTCTTGGGGTCAAGAACAATTAGACCAAGCATTGCATGCTATACGAACTGGGCAAACAACTGTACAACGAGCTGCAGCTGACTATGGTATACCTTCTGGAACACTTTATGGCCGGTGTAAACGCGAGAAAATTGAATTGTCTCGCAGCAATCCAACCCCATGGTCTGAGGACGCTATGATGGAAGCTCTGGAATCAGTACGATTAGGTCATATGAGTATTAATCAGGCagctatacattataatctacCATATTCTTCGTTATATGGACGTTTCAAAAGGGTGAAATATGGAGCTGGACATCCCGATGATGATTGTGATGATATGATCGATTCAGATACACAAAGTGAACAACAGCACAttcaacaacaacagcagcagcagcagcaggcAAATCAGCAAGTACAGGCTACTCCAGTGTCTCAAATAATGTTGGTTCAATATCCAGCACCACAAATTCAAATGTACCAACAACATCCAACTCATTCAACCACTAGTTGA
- Protein Sequence
- MTLNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNQIQQDQCNRNYYRIEQSGFAPISVDQENKSINTIHCMTVATSTEDDEKEIKSTLTDLPVVILEPHPSLNLQAQQQPQIVHIPIPPSQQQQQQQQQQQQQQQQQQLSHVTQHTNQPQLQQASVQTHSQMIITTGPVMTVNEADISPDIQPVGPRATPVPVKNNTSPSSTPTHRDMAVGTTCSNDMMRSDGSERKFESAKFETLRTIDQSSXXXQQQQQQQQQQQQQLSHVTQHTNQPQLQQASVQTHSQMIITTGPVMTVNEADISPDIQPVGPRATPVPVKNNTSPSSTPTHRDMAVGTTCSNDMMRSDGSERKFESAKFETLRTIDQSSDAIGIERQHSNDRNINDEDNSMHTMMITPELLGLLPNSTNAGDVSEDSSSNNINKQYGTNSGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQSEQQHIQQQQQQQQQANQQVQATPVSQIMLVQYPAPQIQMYQQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01329101;
- 80% Identity
- iTF_01329101;