Basic Information

Insect: Scaptomyza tumidula
Gene Symbol: RREB1
Assembly: GCA_035044465.1
Location: JAWNNW010000668.1:2709052-2711032[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 3.2e-05 0.0023 18.3 0.2 1 23 432 454 432 454 0.99

2 6 0.014 0.99 10.0 0.7 2 23 467 488 466 488 0.96

3 6 3.8e-07 2.7e-05 24.3 0.7 1 23 494 516 494 516 0.99

4 6 2.2e-06 0.00015 22.0 6.3 1 23 522 545 522 545 0.97

5 6 0.0021 0.15 12.6 5.9 1 23 553 575 553 575 0.95

6 6 4.6e-05 0.0033 17.8 1.2 3 23 582 603 580 603 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	3.2e-05	0.0023	18.3	0.2	1	23	432	454	432	454	0.99
2	6	0.014	0.99	10.0	0.7	2	23	467	488	466	488	0.96
3	6	3.8e-07	2.7e-05	24.3	0.7	1	23	494	516	494	516	0.99
4	6	2.2e-06	0.00015	22.0	6.3	1	23	522	545	522	545	0.97
5	6	0.0021	0.15	12.6	5.9	1	23	553	575	553	575	0.95
6	6	4.6e-05	0.0033	17.8	1.2	3	23	582	603	580	603	0.96

Sequence Information

Coding Sequence: ATGTCGACCACTGAAGAGTTTTACCCAAATATAGAAACGTGGTGTCGCCTTTGCCTTAAGGAACATAAGGATGCCCACACAATATTCGCCGAAGACGACACTCAACTGTCGATACCGATGCGCTTGATGGCCTGCCTCTCGCTGGAGGCGAAGCCATCGGATggcttgccaaaaaaaatatgcggAGATTGCCGTTATCAGCTGGAAAAATCCTTTCTCTTTCGGCAGCGCAGTCAGGCGGCAGATAAAAAGCTACGCAAACACAATCGCCTGGTCAGTATGGGGAAAAAAAGCCGCGTCTTCGCCAAACATTCTGACGACTCTGACGAGGATGAACTGGAGTTCGAGGAGTCCATGGCCTTCATAGATCAAATGGAAAATCTTTACGAGAAGCGATCACAGGAATGGCGCGAAAAGTACAAGAAAGATATAGAAAAGGAGTTTGAAGTTCGTTTTGAATCTTCTAAAGAGCAACACTGCGCGGATCTGCGCAACGAGCTAATCGAGGAAGTACGAAGTGATGTACGTCGGCAACTACGCGACGAAGTGCAGGAGGAAAGTCGCAAGGAACAGCTTGCCAAACTCGTAGGCGAACTGGAGGTATTTCTTGCAGAAAAGAAAGCTGGACTTTGGGAGACTCTAAGTGAGCTACCAGTTGAGTCTAAGGTTGATAAAGAGTCACTTTCGGCACCAAAAGCAACAGTAACACCGAAACCCACGCCGACGTCACAGCCTTCATCCGAGCAGCGTCAGTTGCGCAAACGTGGACGCGACTCAACGCCCACCGTACAGTTGAAAAGTCGTCCAAAATTATCTGCAACTCAAAAAACAGAATATGTGCTCGAAAGCAGCCCCAAAGTGGATCAACAATCGATGGCAGATAACTCAGAAAGCTATCATGACATAAAAATGGTCGGCGCTGGTGAATTGGTTAGTAGTAAGAATGGTGACATCTATATCATAAGTGCCAGCTCCACAGCGACAACGTCGACGTCCTCAACAGACTATCAGCAGGACAAAAACATAACATCATACAACATTAAGGACAATGGAGACATACAGTTTAATGATGCGAAATCGGAGGATATGGGAGATGTGGTTGTATTTGATCTTGAAGCTGAGGTTGGCGACGATCAGCAGATATATGAATACGACGACAATGTCATTATATTGTCAAACGAAAAGGCCAACAACGAAACACCACGCAAAAGATCCAAAAGCGATTTTGTGATTAAGCGCGCTCCACAGGACACAAAGCCAAACATTGGACGTGTGAGTGATACGTTGAAGACGTTTCAATGTCAGTTGTGTCCTATTGCGTTTGCCACAGAAAAACTACTATCACGTCATCTCAGCACACATATCAAAACGCTAAAGAATGGCAACGGTGGCGCTCTCAAGTGTCCAGTTTGTCAGCTGCAGTTATCCTGTGCTAGTTCATTGAAGCGTCATATGGTTATCCATACAGGTATGAAACCATATAAATGCGATGAGTGCGATTTGTCGTTCTCGCAGCGTGAGGTTCTTAAGCGCCACATGGATACGCATACGGGCTTGAAACGCCATCAGTGTCCACATTGCGATACGTGCTTTGCTCAAAAGACTAACTTGCAGCAGCACATCAATCGCATGCACAGTAAGAATGGGGAACGCCAGCACAAATGTCACCTCTGCAGTAGAAGTTTTAATCATGTTTCGGGTCTGAGTCGTCACCTGGTCAACCATGCTGGCGTCACATTTGGCTGCAAGGAGTGTGGACGACATTTTAACGATCGCAGCGCTGTGCAGCGGCATCTGCAGAATGTGCACAAGATGAAGGACACCGCCATGGATGACAATGGCAACGATACAGAATAA
Protein Sequence: MSTTEEFYPNIETWCRLCLKEHKDAHTIFAEDDTQLSIPMRLMACLSLEAKPSDGLPKKICGDCRYQLEKSFLFRQRSQAADKKLRKHNRLVSMGKKSRVFAKHSDDSDEDELEFEESMAFIDQMENLYEKRSQEWREKYKKDIEKEFEVRFESSKEQHCADLRNELIEEVRSDVRRQLRDEVQEESRKEQLAKLVGELEVFLAEKKAGLWETLSELPVESKVDKESLSAPKATVTPKPTPTSQPSSEQRQLRKRGRDSTPTVQLKSRPKLSATQKTEYVLESSPKVDQQSMADNSESYHDIKMVGAGELVSSKNGDIYIISASSTATTSTSSTDYQQDKNITSYNIKDNGDIQFNDAKSEDMGDVVVFDLEAEVGDDQQIYEYDDNVIILSNEKANNETPRKRSKSDFVIKRAPQDTKPNIGRVSDTLKTFQCQLCPIAFATEKLLSRHLSTHIKTLKNGNGGALKCPVCQLQLSCASSLKRHMVIHTGMKPYKCDECDLSFSQREVLKRHMDTHTGLKRHQCPHCDTCFAQKTNLQQHINRMHSKNGERQHKCHLCSRSFNHVSGLSRHLVNHAGVTFGCKECGRHFNDRSAVQRHLQNVHKMKDTAMDDNGNDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01327384;
90% Identity: iTF_01327384;
80% Identity: -