Stum004447.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- Znf574
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000444.1:1778802-1781039[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.26 18 6.0 0.2 2 23 341 363 340 363 0.95 2 10 3 2.1e+02 2.6 0.2 6 23 373 390 373 390 0.97 3 10 5.8e-05 0.0041 17.5 0.8 1 23 396 418 396 418 0.98 4 10 0.0026 0.18 12.3 0.6 1 19 428 446 428 451 0.88 5 10 0.00033 0.024 15.1 2.5 1 23 459 482 459 482 0.97 6 10 8.8e-06 0.00063 20.0 1.2 3 23 490 511 488 511 0.94 7 10 0.0029 0.2 12.1 0.4 2 23 523 545 522 545 0.97 8 10 3.6e-05 0.0026 18.1 3.6 1 23 552 575 552 575 0.93 9 10 2.3e-06 0.00016 21.9 1.2 1 23 581 603 581 603 0.98 10 10 5.5e-05 0.0039 17.5 1.4 1 23 609 632 609 632 0.97
Sequence Information
- Coding Sequence
- ATGGAAAagtgtgtgctttgttttgACCGCTGTAAGATCGGCGAATCGTACATGATATTTTCTGAGACTGGTTTGCGGCTTAACATTTgccaaacaataaacaaacacttttGGCTAGAGTTAAGCAACGCAACAGGAGGGGAGCGGCAGGAAATTTGCCATCAATGCTGGGAGTGTGTAAGCAACTTTAACTCATTCTATCAACGCGTCTTTAATACACACCAGGAGCGACGCGGCGATGTTAAAAATGTACCCATTGAGTTCTGTGACGAGTCGGAAACAGCCAATCCACTTGCTTTTGGCGGTGAGTTGGATGCATTGGCCGAAGATTTCTTTGCAACTGGTGATATCAAGGTAGAGGTGAACGAGCTGGAACCGCTGCCCAAGCTTGAAATGGTCGAAGAACCAGTGGTTGAAGAGAAGAGCAGTGCACCCAAACGCGCCAGTCTCGAGCATACACCTACTACTAAGAAGCGCATTAAAAAGGAACAGCGTGCACATGCCAGTGAATCAGATGGGGACATACCGTTGGCGGAATTCCTAGATTTAAAAACCTCTGCAAagccatcagcagcagcagctagtaAGCAACCACCAGGGAAGGCTCAAGCGCTTCGTAGAAGCACTCGACGTGGTCGCCCACCGAAAAATCGAATAACACCGCCAAAATCCCCATCAGCTAGCCCGAAAATGGAACTTCCGTCTGATGATGACCATGAAAGTGAAAACGATAATGATCATGATATGGACTTCGTGGCTGCCGAAGCATTGCTTGGCACAGAAGACAGCGACAGTTCGAGCAAGAGCAGCGACACCGATTCTGGCGATAGTCTGCCGGATGTTGAGCCGGAGGAGCGCTATGCAGAGATACCTAAACGGGTAGTGGTCAAGCCTAAAAAATATCGAAAGCGTCCCAAACCGTTGGTGCCACCCGTGCGCATGAGTCGCGAGGAGCTCGAAAGAAGAAAGGCGCAACAAAACGAATACGATGAGAtcatttttgagtttttcaaGAAGCTTCCATGTCATGTTTGCAGTCTTCTAGTGCCCAATTTCGGAGACATGCTTCGCCATCTGCGCATGTCCCACAATATTGAAAGCGGGTTTATTGCTTGCTGTGGTCGCAAGTTTCACATACGCCGCGGACTGGCTGAGCATGTGCTGGTTCACAATAATCCTAAGCACTTTATGTGCACCCAGTGCGGTCGTGTGTATCAGGACTCTAAAACGCTGGAGACACACGagcaaacgcacacaaaccCCCAAACGGATAAGCGAATGTATCCGTGCGACAAGTGTTCGAAGACCTTTACCACAAAAGCCGCCGTCGCATATCACGATATGTCCAAGCATGTGCCCAAGTCGGATTTTAAGTATACATGCCCCGagtgcaacaaaaaGCTGCCCACAGAACGCAAGCTGAAAGAACATCGACGACATATGCACGATCCGGAGACGGCAATCATTTGCGATAAATGCGGCAAAACGTTGCGTACTCAGGCAAATCTTAAAAAACACCACGAAATGGAGCATTCCGATACGCCACGCCCAAAGCCGGATCCCGTGCAATGCGAGATTTGCGGCACTTGGCTGCGTCATATATCTGGTCTTAAGCAGCACATGAAAACAGTACATGAACCTCCAGGTGGTGAGCATCGTTGTCCCATCTGCGACAAGACATCCACCAATTCACGCGCACTGAAACGACACATTTATCATAATCATCAATGCGAAAGAAAGTTTCGCTGTACCATGTGTGAGAAGGCATTTAAGAGGCCGCAGGATTTGAGAGAGCACACATCGACACACACGGGTGAGGTGCTTTACACTTGTCCAAACTGTCCGCAAACGTTTTTTTCCAATGCCAACATGTACAAGCACCGCCAGCGATTGCATCGTGCGGAATGGGAAGCGGATCGCAAGAAACCGCTGCCTCCTAACATTATGCAGCAAGCAGCTACGAAGAACCGTCAGCAGGCCAACAGTGGTGCCGGCCCAGCGCTGTTCATGCAACACGCGGAGCCAACTACCGCACCAACCCTCAAGCAGGAATCACAACAATTGCattag
- Protein Sequence
- MEKCVLCFDRCKIGESYMIFSETGLRLNICQTINKHFWLELSNATGGERQEICHQCWECVSNFNSFYQRVFNTHQERRGDVKNVPIEFCDESETANPLAFGGELDALAEDFFATGDIKVEVNELEPLPKLEMVEEPVVEEKSSAPKRASLEHTPTTKKRIKKEQRAHASESDGDIPLAEFLDLKTSAKPSAAAASKQPPGKAQALRRSTRRGRPPKNRITPPKSPSASPKMELPSDDDHESENDNDHDMDFVAAEALLGTEDSDSSSKSSDTDSGDSLPDVEPEERYAEIPKRVVVKPKKYRKRPKPLVPPVRMSREELERRKAQQNEYDEIIFEFFKKLPCHVCSLLVPNFGDMLRHLRMSHNIESGFIACCGRKFHIRRGLAEHVLVHNNPKHFMCTQCGRVYQDSKTLETHEQTHTNPQTDKRMYPCDKCSKTFTTKAAVAYHDMSKHVPKSDFKYTCPECNKKLPTERKLKEHRRHMHDPETAIICDKCGKTLRTQANLKKHHEMEHSDTPRPKPDPVQCEICGTWLRHISGLKQHMKTVHEPPGGEHRCPICDKTSTNSRALKRHIYHNHQCERKFRCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPQTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMQQAATKNRQQANSGAGPALFMQHAEPTTAPTLKQESQQLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325138;
- 90% Identity
- iTF_01325837;
- 80% Identity
- -