Stum011945.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza tumidula
Gene Symbol
hang
Assembly
GCA_035044465.1
Location
JAWNNW010000801.1:28462-45939[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.35 25 5.6 1.0 3 23 575 596 574 596 0.93
2 18 0.59 42 4.9 3.6 3 22 703 722 701 722 0.89
3 18 0.00076 0.054 13.9 3.3 1 22 826 847 826 849 0.90
4 18 0.088 6.2 7.5 0.1 2 21 861 880 860 881 0.93
5 18 0.00088 0.063 13.7 0.2 2 23 1024 1046 1023 1046 0.95
6 18 0.0025 0.18 12.3 0.1 1 23 1054 1077 1054 1077 0.96
7 18 0.0032 0.23 12.0 0.1 3 23 1165 1185 1164 1185 0.93
8 18 0.00036 0.026 15.0 2.9 2 23 1296 1318 1295 1318 0.97
9 18 0.029 2 9.0 0.2 2 23 1327 1349 1326 1349 0.95
10 18 0.0017 0.12 12.8 0.3 1 23 1362 1385 1362 1385 0.97
11 18 0.00016 0.011 16.1 1.1 1 23 1445 1467 1445 1467 0.99
12 18 0.0025 0.18 12.3 0.9 1 23 1475 1498 1475 1498 0.96
13 18 0.086 6.1 7.5 0.4 2 19 1506 1523 1506 1524 0.94
14 18 0.00019 0.014 15.8 0.3 3 23 1623 1643 1622 1643 0.97
15 18 0.0064 0.46 11.0 0.1 1 23 1678 1700 1678 1700 0.97
16 18 0.00075 0.054 14.0 0.6 2 23 1787 1809 1786 1809 0.93
17 18 0.061 4.4 8.0 1.4 3 23 1865 1885 1865 1885 0.98
18 18 4.7e-05 0.0033 17.8 2.5 1 23 2332 2354 2332 2354 0.99

Sequence Information

Coding Sequence
ATGTGCGACGCtgtcgcaacaacaatatcggCAGTAACAGGAACAGGAGCTAGCATAGCGGGTGATACAATGACAGCGATGGAAGAACAAAATCAGAGACAGCGACAAAGTTGCTGTCGTTTATGCATTGCTCCCGCTAGCGAATGCATCTCGATTATTAACAGTTATGCCGCCGATAAGGAGCCGCTGGCCACTAAAATATACAACTGCGTAAATATCAAGATCACATCCGTGGATCGTCTATCGTTGCATATTTGCCATGCCTGCATCAGTTATTTGAACTCGTGGCAAAGCTTCAAGAATCGCTGCCTCAGCTCACAAACCAAGCAGCGTCAATGGCTGGAGAACGATAAGACCAAACAGCAGACGCTACTCGGATACTTGGATTTGAACAGAGCCGAGAATGGCagtgctgccgccgccgccattgagaaacaacaacaacagcagcagcagcacgaaTCGAAAATCGATACAGCGACGACGAGTGCTGCGGAAAAGGCgtctgctgccgccgccgccgccgccaacaTATTGGATGGCATACCTCAACTGAAGAAACGCAAATCGTTAACAGTCTATGTGAGtccaaagcaacagcaaaaacaatcgcaacagcttcagcagcagcagcaacaacaatcgcaacaacaacagcttcagcagcaacaaacacagcaacagcaacagcacgcaacaacaacagcaataacagcgacagcagcatcAGAAAGAACAACAAGCGCAACGGCAGCGGCGACGGCGCCGGAGTCACAACTAACATTACAAACCCTTTTGTTGCAGGTGCCGCCCATAGcgacaacacaacagcaacagcagcgcaaatatcaacaccaacaacagctacagcagcagcagcagcagcaacaacgtgGCAAGCAgcaatatcatcatcatcagcagcaacaacaacaacagcaacattatcaccatcatcaacagcagcgaTTGACTCGGATTCGTCAACCGcgacgccaacaacaacatcagcaccaacatcagcagcaacagctacatacatcaacagcaacatccgTACAGCGTTTATCCGGCAAATTGAAGCCAAAAGTGTATTTGCCATTGGATATAACAGTGCCGCCATTGCCACCATTattgccgccgctgctgcagtCAACTGCTGCCACGTtgtcaactgttgttgctaatgCAGCAGCgccattgccgttgccattgccattgccgttgtcgttgtcgttgccgcTGCCAATTGATTTTAGCCAGAATctaaatccaaatccaaataatattcaaaggCAAGCGCCGCCGTTGCCGCCGTCGCTGCCTCCAGTTGCTGCAACAATGACCAGCAATATTGCAGCCACTGTTACTTCCTCAACCGCCGCTGCCTCGGCCACGGCCACATTTGGCTCTGGCTGTGGCAATGTTGGTGCTGTCACGACTCCATTGCTTATGCCACCGCTGCCTGCCGTGCCCATCAAGGATGAGCCACTGGACGATACGGATGATGATTTTCAAATGAAGTGCATCGATGAATCGGATGACATGATGGATCCAACAATGTTCCTAGAACGCTCCGAGCATGAGGGCGATGTGCCACTAAatACCTCCGACTATGATTATACGGCTCAACATTGCGTGACGGCTGTTGCGGCGGCGGCATCATTGCCCGCCAGCGCTGTTGCAAATGTGGCCGCCGCTGGCGATTCGAAGGTGGCCAGTTGTCGTGCCTGCAGTCTACAATTCTCGACGCGGGCAAATGCGCGACGCCACGAACGCAATCTGCATCCGAATCTGTTTCAATTGTCGACAGACTCGCCCAATAATACGCCCATTACAAAACCGACACCAGCATTGGCGGCCGCATTAGAGATACAGCGTGCTGCTGCCGCAGCTGCAGCGACTGCCGAAGCAACAAAAGCCGCTGCCGGTGGCAATATATCGGCACAAAAATATCGCCAGGTGGTGATGAATACGTTCATCAAGTGCGAAAACGGTGGCTTCGACTACGACAATCCCGAACAGTATCAGCAACTGATGTCGCGCGACAAGGTCGACTTCATCAATGAGAACAATGAGTTTCTGGAGCAATATCAGACAATGACATGTCGCTGTTGCAACAAGTTCTTCAATACCTATAAGAACTTTATGGCACATGTGCGCAAAAAGTATCCATTGCTGCCGCGTAATCTCTGCTTCAATTGTCTCAAGATGAACGATTCCAAGGCGCTCTTCATATCGCATCTGAAGAAGCGCAATTGCATCAATTTGTATCGTGTGCTCAACGCTTTGCGTACGAAGCAACCAAACTTTGTccatgccaatgccaatgcagAAGCAAGTGTTGCAAGTGATGCAAGCGGTGTTGTGGCAACaccagtaacagtaacagcgGCAACGCCAGCACACgaaacatcaacatcaacggATCGTCCGGAGAAGTTGCGTGCCAAGGAGCTGCTGGTCAATAAACTGTACGAATGCAAATTGTGCCCAAAAGGTTTTCGCACCAAGCACGAGTTTCGCACCCATGTCTACGATAAGCATGCGGATGTGCAGCGCAAGGATAACAATTCGATACAGTGCAGCTTCTGTGGCTTGGACTTTGCCGATCCGGTTGATCGACGTCGACATTATAACAATATGGATTGCATTGTCCGTTTGCGCTGCATGACCTGTGATGCCAAGTTGGAGACGCATCAGCGTTTCCTTGATCATGTCTATCAGGATCATTTGGGTGGTGTGAGCAGCGATAATGCGTCGACGGCGACAAGTGGCTTGGATCATTCGCCACCCGGCAAGCGTAGCCTATTGGGTGCCCTTGGCATTGGATCGAATGATGAATCGCGCAGCAGTCGCaccaatcacaacaacaacaaagacaacaatccaacagcagcagcagccgcagccggTGGTGGAGCTGGAACGCCATTAACCTCAACACCCaaagtaacagcagcagcagcaacaacaataacaaccacagcagtagcagcatcaAGTGGCGGATCTACATCGGGCGGACGCGATGCACCAAAATCGCAGTATTTTTCACGAATGCCACAGGTCTGTCCGATCTGTGGCCAGCAGTACAATAACTATAACAATGTGCTGCGACATATGGAATCGAAGCATCCCAACAAACTGCCCGAGACATATAAATGTGTACGCTGTGGCCTGGGTTATCCGCGCATCTCCTATCTCCGCGAGCACATGATCAATATTCATGGCGTGGACAAGAATCGTCATTCGGGCGGCTTTGAGTATATTGTGAATGCCGATGCAGTTAAATTGGCGGATGGCAGCACGCCCAATGTCTATACGGGACGTTACGATTATGTGATGAAGGATTTAATATCTATAAACAATGGTGGGACACTCGatgatgatgatgaggaaaGCGGCAGCATTGCAAAAAAGATGCGTTTGGAtgatagcagcaacaacagcagcattgcCAACATGAGCATTGCCAACCAGCAAAAAGAGTGCATCATCTGCAATGCAGTTTTTAGCAACAATATTGGTCTTTCGAATCATATGCGTTCGCATTATACGGCCTCAACAACGACAAGTGCAGCATTAGCGGCGGCCAATCGCATGACGCCCAAATCATTGACAATAACGGCAACGCCACCGTTGGAAACGGCTGCGTCAACAGTATCCACAGTGGCAACACCATCAGCTACACTCAAAACAACACTCACATCGACGACTACACCAAAAATaacaggagcaacaacaacaacagctgtagcaggagcaggagcaaaaACAACTGGCGGAAATTTGCCGCCAGCGATGGTACATCAGACGGCACAGGAACAAGCGGTATTCCGTCGTAGTTTGGATCAGGCAGCTGATCGACGATTCCGACGGATGCGTTGTCGCATCTGTCAGCGAAGATTTAGCTCAAAGAAATCCTATCGATATCACATGCTCACCGATCATCAGGTGCAGAATGTTCAGTTCATCAAGTGCAAGCTATGTAATGCCGAATTTGCGTACGAAAAGGGTCTGAAGGTGCATCTGTTCAAGGTGCACGGTCGAGCCATTAAGGATGAGATGATTATCAAACAATTCGAATGCGATGTCTGCTCCACTGTCTACAGTTCCGAACTAGAATTGCAGCAGCACAAACGCAGCGTGCATAAGTCAACGCATTCGATAGCCAGTGATTCGGTTGCTGGCAAATCAACATcgacatcgtcatcatcaacatcgaAATCTGCTACGACTACCTCAGCTGAACtggccgccgccgccgccgcggACACATCTGGCATcacagcggcggcagcagcagcagcagttctgCCACTTTACTGGTACCAGTGCAAGTATTGTCCATCTAACTTCAACACCAACAAGAAATTGGCCATACACATCAATTCGCACGATGAGTTCGATTCGAATGATTATTCGTGCAAGGATTGTGGCAATGTTTACAGTGGTCGCAAAAGTCTATGGGTTCATCGGTATAAGAAACATCCGCAGGTGCCGGATCCGGCCGAGTGTACGCTGTGCCGCAAGATGTTCTTTGATCGCCAAATGCTGGAGAATCATACACCAACCTGCAATCGCAAGCCAATCACTGCCACTGGCGCCCATCAGCAGCaggatcagcagcagcagcaactacaaacGCAACACCAACGTGTCATCTTCAAGCACAAAACgggcgatgatgatgacgacgagggtgatgatgatgatcagtTACTTCTGCTGGAcgatggtggtggtgttggtggtggtggtggtggaggcaGTGAGAGTAATGGTTGTGGTGGTgcatcaacagctgctgcagctgccacaataaaaacaagcacaATGAAGATACGCATTCCCGAGGTGGCATGCACAATATGTGGTGCACGTTTCACCGACCAGGAAATGTTCAGCAAACACATCGAGAAGCACGAAAAAGATCTCTATGTTGACGATCCATTGGCGGCCATGTTCGATGATGGCCCAGCCGATGCTGGACAATTTCAGGTTGAGCGTCAAAATGAGAATGGCGAATATGCGTGCGATTTGTGCGCCAAGACGTTCCCCCAGGTGATAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGaatccAATCATCGATGGCGAAGCGACAACattgaacagcagcagcaacaacaacaacaacaacaattcgctGAGCTCATCATCGATGCTGCATCTGCGCGAATTGCATGCTGTGGGTCTGATGCCcaaccagcaacagcatcagaaacagcagcagcaactgcaactgcaacaacaacatcagcagcagcagcagcagcgatcgAGCAACAAATCAATGAAACGTAAACGTGAATTGAAATGCGAATATTGCGCCTCCACAttcataagcaacaacaatctgcGTCGCCACATGTACGAGCTGCACAAACATGAGGTCAGCAATCTGCCAGAGCCGCCCGTTATTGAGGTGGATGAGCCGTTAAAGTGTCGCCGTTGCGATAATCTAGAGTTTGAGACCAAAGAACTGTGGATCGAACACAAAATGGCCGATGCGAAAGTTGTGCGTCCATTCTGTCCATTCCAATGGGGCTGTGATTTGTGTGGCGAATATTTGTCGCGCAAAGAGAAGCTGCTCAATCACATACACAATCATCTCAAGGAGGATGTGATTGTGCCGGTGGCGACTACTACTACAAAGCCACCACCAAaagcaccaccagcagcaacaacaaccaccgcAACAGCAAAGGAAACAGTCCccgcaccagcaacagcagcaacatcaacatcaacagcagcagcgaaggttaaaactacaacaactgcagcaacagcagcgacgaAAAATCTTAAGGGtaataaacaacagcagcggcagcgggatcaggcagaggcagaggcggAGGCTAATGATGATGTAAAGCTAGTAGCAAAGGCTAGCACACATAGTGATATGGATGATGATGAgagcgatgatgatgaaggtGCCAGCACTAGTGCTGacgatgatgctgatgctgatgatgatgaggaagacgatgatgatgatgacgacgatgatgacgatgatgatgaagatgacgatgatgatgatgatgatgatgatgatgaaggcGACAtcgatgatgaagatgatggcGACGACGAAGACGTTGGTGAAAATGTTGTGGcacagcaaatgcaattgcaacagccacaaagtgcaaacacaaacaaaaataatagcacaattgttgataatgatgatgatgacgacctCATTGAGGAGGTTATCGATGAGGATGGCATTGTTGTCGAGCAGCTGGACgttgacgacgatgatgatgatgatgacgacgacgacgacaacaacaacgatggcggtgataatgatgatgatgacgatgacgacgatgatgatgatatcgATGAGGATgacgttgatgttgatgatgatgatcgtgAACATGATCATGATGTTAACTCAATGGAGGGCCAACAACCGCAGCCAAGACGtctcaattttaattactcgcgcaccaacaacaacaacaacaacaccaacagcgaTCGGCTAAATGGCGATAGCAGTGGTAACGGTGCTAAACAGGAAACAGGGGGGGAGGAGGCAGATGAAATGAatactgatgatgatgacgatgacgaagGTGATACTGTGGGTGAAGCGATGACCATTGATGATATTATTGAAGAAGATGATGGtgtggatgatgatgatgatgatgtcgtTGGTGtcggtggtggtgttgttgagGATGAcgacgataacgataacgatgaAGATGTTGGTGATGTtcgtgatggtgatggtgatggtgaggGCAtggatgaggatgatgatgatcatgatcatgatcatgaaCATGGAAATGTCGTGGGCAATGGTATTGATCGTGATGATCATCgtacaacatcatcaacatcggAAAGcgaatcgacaacaacaacaatatcgcATTCAACAACTGCGGCGGCAGACGCTTATTCCAGCTATACGTGTGATCTATGTCAACTTTGTTTCGATTCTCAGGAACAACTGCAGACACATATTAAAAGCCATTTTCTCAATGGACCATCATCTTCGGCAGGAAgtagcaccagcaacagcaacagcacctccagcagcagcaaaagcaatagcagcagtggcaaaagcacaaataacaacaacaacaacagtaacagcaacaaaacaaaaaccaaaaagtccAGCTTGGAAGCAACGAAGACAACATTAGCGAATGCTGCAACGGGCTCAAACTGA
Protein Sequence
MCDAVATTISAVTGTGASIAGDTMTAMEEQNQRQRQSCCRLCIAPASECISIINSYAADKEPLATKIYNCVNIKITSVDRLSLHICHACISYLNSWQSFKNRCLSSQTKQRQWLENDKTKQQTLLGYLDLNRAENGSAAAAAIEKQQQQQQQHESKIDTATTSAAEKASAAAAAAANILDGIPQLKKRKSLTVYVSPKQQQKQSQQLQQQQQQQSQQQQLQQQQTQQQQQHATTTAITATAASERTTSATAAATAPESQLTLQTLLLQVPPIATTQQQQQRKYQHQQQLQQQQQQQQRGKQQYHHHQQQQQQQQHYHHHQQQRLTRIRQPRRQQQHQHQHQQQQLHTSTATSVQRLSGKLKPKVYLPLDITVPPLPPLLPPLLQSTAATLSTVVANAAAPLPLPLPLPLSLSLPLPIDFSQNLNPNPNNIQRQAPPLPPSLPPVAATMTSNIAATVTSSTAAASATATFGSGCGNVGAVTTPLLMPPLPAVPIKDEPLDDTDDDFQMKCIDESDDMMDPTMFLERSEHEGDVPLNTSDYDYTAQHCVTAVAAAASLPASAVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSPNNTPITKPTPALAAALEIQRAAAAAAATAEATKAAAGGNISAQKYRQVVMNTFIKCENGGFDYDNPEQYQQLMSRDKVDFINENNEFLEQYQTMTCRCCNKFFNTYKNFMAHVRKKYPLLPRNLCFNCLKMNDSKALFISHLKKRNCINLYRVLNALRTKQPNFVHANANAEASVASDASGVVATPVTVTAATPAHETSTSTDRPEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGLDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGVSSDNASTATSGLDHSPPGKRSLLGALGIGSNDESRSSRTNHNNNKDNNPTAAAAAAGGGAGTPLTSTPKVTAAAATTITTTAVAASSGGSTSGGRDAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINIHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYTGRYDYVMKDLISINNGGTLDDDDEESGSIAKKMRLDDSSNNSSIANMSIANQQKECIICNAVFSNNIGLSNHMRSHYTASTTTSAALAAANRMTPKSLTITATPPLETAASTVSTVATPSATLKTTLTSTTTPKITGATTTTAVAGAGAKTTGGNLPPAMVHQTAQEQAVFRRSLDQAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGRAIKDEMIIKQFECDVCSTVYSSELELQQHKRSVHKSTHSIASDSVAGKSTSTSSSSTSKSATTTSAELAAAAAADTSGITAAAAAAAVLPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQVPDPAECTLCRKMFFDRQMLENHTPTCNRKPITATGAHQQQDQQQQQLQTQHQRVIFKHKTGDDDDDEGDDDDQLLLLDDGGGVGGGGGGGSESNGCGGASTAAAAATIKTSTMKIRIPEVACTICGARFTDQEMFSKHIEKHEKDLYVDDPLAAMFDDGPADAGQFQVERQNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQNPIIDGEATTLNSSSNNNNNNNSLSSSSMLHLRELHAVGLMPNQQQHQKQQQQLQLQQQHQQQQQQRSSNKSMKRKRELKCEYCASTFISNNNLRRHMYELHKHEVSNLPEPPVIEVDEPLKCRRCDNLEFETKELWIEHKMADAKVVRPFCPFQWGCDLCGEYLSRKEKLLNHIHNHLKEDVIVPVATTTTKPPPKAPPAATTTTATAKETVPAPATAATSTSTAAAKVKTTTTAATAATKNLKGNKQQQRQRDQAEAEAEANDDVKLVAKASTHSDMDDDESDDDEGASTSADDDADADDDEEDDDDDDDDDDDDDEDDDDDDDDDDDEGDIDDEDDGDDEDVGENVVAQQMQLQQPQSANTNKNNSTIVDNDDDDDLIEEVIDEDGIVVEQLDVDDDDDDDDDDDDNNNDGGDNDDDDDDDDDDDIDEDDVDVDDDDREHDHDVNSMEGQQPQPRRLNFNYSRTNNNNNNTNSDRLNGDSSGNGAKQETGGEEADEMNTDDDDDDEGDTVGEAMTIDDIIEEDDGVDDDDDDVVGVGGGVVEDDDDNDNDEDVGDVRDGDGDGEGMDEDDDDHDHDHEHGNVVGNGIDRDDHRTTSSTSESESTTTTISHSTTAAADAYSSYTCDLCQLCFDSQEQLQTHIKSHFLNGPSSSAGSSTSNSNSTSSSSKSNSSSGKSTNNNNNNSNSNKTKTKKSSLEATKTTLANAATGSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01325809;
90% Identity
-
80% Identity
-