Basic Information

Insect: Scaptomyza tumidula
Gene Symbol: -
Assembly: GCA_035044465.1
Location: JAWNNW010000444.1:4540165-4545892[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.63 45 4.8 0.3 2 23 246 268 245 268 0.96

2 19 0.0041 0.29 11.6 0.8 1 23 300 322 300 322 0.99

3 19 0.067 4.8 7.8 4.6 1 23 331 353 331 353 0.96

4 19 0.0038 0.27 11.7 0.2 2 23 362 384 361 384 0.94

5 19 0.0011 0.075 13.5 0.0 3 23 392 412 391 412 0.96

6 19 0.0021 0.15 12.5 0.3 2 23 421 443 420 443 0.97

7 19 3.7 2.6e+02 2.4 1.7 2 20 452 467 451 474 0.53

8 19 4.5e-07 3.2e-05 24.1 1.2 1 23 480 502 480 502 0.98

9 19 9.7e-06 0.00069 19.9 4.1 1 23 508 531 508 531 0.98

10 19 0.81 58 4.4 0.0 2 23 804 826 803 826 0.95

11 19 1.8 1.3e+02 3.4 0.1 6 23 835 852 835 852 0.98

12 19 0.0086 0.61 10.6 0.3 1 23 858 880 858 880 0.99

13 19 0.00029 0.021 15.3 2.2 1 23 889 911 889 911 0.99

14 19 0.095 6.7 7.4 0.1 2 23 920 942 919 942 0.87

15 19 0.00052 0.037 14.5 0.0 3 23 950 970 949 970 0.96

16 19 1.7 1.2e+02 3.4 6.3 1 23 978 1001 978 1001 0.98

17 19 0.22 16 6.2 1.3 2 23 1010 1032 1009 1032 0.96

18 19 7e-07 5e-05 23.5 1.0 1 23 1038 1060 1038 1060 0.98

19 19 3.3e-06 0.00024 21.4 2.5 1 23 1066 1089 1066 1089 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.63	45	4.8	0.3	2	23	246	268	245	268	0.96
2	19	0.0041	0.29	11.6	0.8	1	23	300	322	300	322	0.99
3	19	0.067	4.8	7.8	4.6	1	23	331	353	331	353	0.96
4	19	0.0038	0.27	11.7	0.2	2	23	362	384	361	384	0.94
5	19	0.0011	0.075	13.5	0.0	3	23	392	412	391	412	0.96
6	19	0.0021	0.15	12.5	0.3	2	23	421	443	420	443	0.97
7	19	3.7	2.6e+02	2.4	1.7	2	20	452	467	451	474	0.53
8	19	4.5e-07	3.2e-05	24.1	1.2	1	23	480	502	480	502	0.98
9	19	9.7e-06	0.00069	19.9	4.1	1	23	508	531	508	531	0.98
10	19	0.81	58	4.4	0.0	2	23	804	826	803	826	0.95
11	19	1.8	1.3e+02	3.4	0.1	6	23	835	852	835	852	0.98
12	19	0.0086	0.61	10.6	0.3	1	23	858	880	858	880	0.99
13	19	0.00029	0.021	15.3	2.2	1	23	889	911	889	911	0.99
14	19	0.095	6.7	7.4	0.1	2	23	920	942	919	942	0.87
15	19	0.00052	0.037	14.5	0.0	3	23	950	970	949	970	0.96
16	19	1.7	1.2e+02	3.4	6.3	1	23	978	1001	978	1001	0.98
17	19	0.22	16	6.2	1.3	2	23	1010	1032	1009	1032	0.96
18	19	7e-07	5e-05	23.5	1.0	1	23	1038	1060	1038	1060	0.98
19	19	3.3e-06	0.00024	21.4	2.5	1	23	1066	1089	1066	1089	0.98

Sequence Information

Coding Sequence: atgtgttttctgTGCACCCAGTGCACAGACAATGCAAATGGCAATATCATTTTTGGAACACCTAAAGCTGAATGGCTTAATATTAATCAGATCATAGAAAAACACTTTTGGTTGCGGaCGAAAGACGTCGATGGACACATTTGTGGCACTTGCTGGGACCAATTATATGCATTCCATAACTTTTATACAAGTGTAGAGCAAGCGCACAAGAAGCTactacaaaacacaaatgaagTTGCAAAAATAGCCGAAACGATCTCAACGTTTGAGTCGGCTGTCGATGGAGAGGCAGCCTTACAAGTGGAGGTAAATGAGAATGTAAAGCAGGAGAGCGGATTTAGCGACAGTGTCGCAGCTGCCGTGAAGCGCAGGCGTGGACGTCCCCGCAAGCAGTTGCCGGGCGAGACGGCCAAAGCTATTGATAGTAACGAATTAAAAGCCGTGTTGGAACAGATCAATctgaatgaaattaaaattgagttCCCAGAGGCGGATCTTAGCATAGCCGATGTGCTTGATGATCAGGAGGATCAAAATATAAGTGATTACCTACAACAAAGCGAGATCGAAAGCGAATTAGCTGAAGCCATCGCCGAGCCCAAGCAAAAAAGGAGGAGAACGATTAAAAAGCGCCGCACCAAATTAAAAGTTGTTAGTAAGGTGAAAAAAATCGGCGTTCATAATGTGAAGAAATCGCAAGAGTTCAACGAATACATCAGGGAGCACTACAAAGTGCAGTGTCCTGTTTGCAATGTACACATGGATGATTTCTCAGATATGCTTGTGCACACACGTAAGGAGCACAATCAGCGCGGTTATGCAATGTGCTGTAATCGAAAATTCTTAAAACGCGGCGTCCTTGTCGATCATTTGCGACGCCATCAGAACCCGGAACTCTTTAAATGTGACATTTGTCAGCGTGTCATGGGCCAACGTCGTAGTCTGGAGTTGCACAAGCGCATGCATGAGATCAAGGAACGTGGCCGACTGTACCAATGCGAGCAATGCTCAAAGAGTTTCTATAGCTCCACTGTTTGCGAGCGCCACAAGCTCACACACATTCCCAAGGAACAGTGGCATGTGCCCTGCACCAGCTGTAGCAAGACTTTCCCCAATGAGTACCTAATGCAGCAACACGTCAAACTGGTGCATTTGCGGAAGTTTGACAAGATTTGCGATGTTTGCGGCAAGTCCATACGTGGCCGCGAAGCATTGGCACGCCACATGGAAGAGCATGCTGGTGCGCCgcaaaaagtaattaaatgcGACCTTTGTGAATCGACGCTAACGACCAAATATGGACTGGCGCGCCACATTAAAATGATGCACACAGCGGAGAATCTGCAGCCGATGCAGTGCGAAATATGCTTTAAAATCTCACCCAGCCTGCAGGCGCATCAGCATCACATcaagtacacacacaatacGGCACGTACACACCAATGTCCCATGTGCGAGAAAGCATTTAAACGACCCAATGAACTTCGCGAACACATGACAACGCATACGGGGGAGGTATTATACACATGTCCGCATTGCCCGAAGACCTTCAACTCGAACGCCAATATGCATGCGCATCGCAAAAAAATGCACTTCAAAGAGTGGCAGGAATACCATCATCGGCACCAGGCACGGCACCGCAAAACAGACACTATTATTTCAGTGAGCGTTCGCAAGACAACAGAAAGAACAGAAGCAGCtgcggcagcagctgttgcctcGACAACGTCGGTCGAGGAGACGACAGCTGAGTTTGTAATGGAGaCGAAAGACGTCGATGGACACATTTGTGGCACTTGCTGGGACCAATTATATGCATTCCATAACTTTTATACAAGTGTAGAGCAAGCGCACAAGAAGCTactacaaaacacaaatgaagTTGCAAAAATAGCCGAAACGATCTCAACGTTTGAGTCGGCTGTCGATGGAGAGGCAGCGTTACAAGTGGAGTTAAATGAGAATGTGGTACAGCAGGAGAGCGGATTTAGCGACAGTGTCGCAGCTGCCGTGAAGCGCAGGCGTGGACGTCCCCGCAAGCAGTTGCCGGTCGAGACGGCCAAAGCTATTGATAGTAACGAATTAGAAGTCGTGCTGGAACAGATCAAActgaatgaaattaaaattgagttCCCGGAGGTGGATCTTAGCATAGCCGATATGCTTGATGATCAGGAGGATCAAAATATAAGTGATTACTTACAACAAAGCGAGATCGAAAACGAATTAGCTGAATCCATCGCCgagccaaagaaaaaaaggaagacAACGTATAAAAAACGCcacaccaaaataaaaaaattgaaagtgaaaaaggagaaaaaggagaagaaggagaagaaggacGGCGTTAATAATAAGACGAAATCGAAAGAGTTCAACGAATACATCAAGGAGCACTACAAGGTACAGTGTCCTGTTTGCAATATACCCATGAATGATTTCGCAGAGATGCTTGTGCACACACGTAAGGAGCACAATCAGCTCGGCTATGCCATGTGCTGTAATCAAAAATTCGTAAAACAAGGCGTCCTTGTCGATCATTTAAAACTCCATCAGAATCCGGAACAGTTTAAGTGTGACATTTGTCAGCGTGTCATGGGCCTACGTCGTAGTCTGGTTTTGCACATGCGCATGCACGAGATCAAGAAACGTGGCCGACTGTACCAATGCGAGCAATGCTCAAAAAGCTTTTATGAAGCCAGGACCTACGAGCGCCACAAGCTCACACACATTCCCAAGGAACAGTGGCATGTGCCGTGCACCGTCTGTAGCAAGACTTTCCCCAATGAAATCGTAATGCGGCAACACGTGACCCTTGTGCATTTGCGAAAGTTTAACAAGATTTGCGATATTTGCGGCAAGTCCATATCTGGCCGCGAAGCATTGGCACGCCACATGGAAGAGCATGCTGGTGCGCCGCAAAAAGTATACAAATGCGACTTTTGTGAAACTACGCTAAGATGCAAATTTAGTCTGGCACACCATATTAAAAGGCAGCACACACCAGAGAATCTGCAGCCGACGCAGTGTGAAATATGCCTTAAAATCTTACCTACCCAGCGGGCGCAGAAGCATCACATcaagtacacacacaatacGGCACGTACACACCAATGTCCCATGTGCGAGAAAGCATTTAAACAAGCCTATGCTCTACGCGAACACATGACAACGCATACGGGGGAGGTATTATACACATGTCCATATTGCCCGAAGACCTTCAACTCGAATGCCAATATGCATGCGCATCGCAAAAAGATGCACTTCAAAGAGTGGCAGGAATATCATCATCAGTACAAGACATTACGCCGCAAAAAAGACACCATAATTTCAGTGAGTAATCGCAAGACAACGGAAagaacagaagcagcagcggcagcagcagttgtcaAGGTGACGAGCTGA
Protein Sequence: MCFLCTQCTDNANGNIIFGTPKAEWLNINQIIEKHFWLRTKDVDGHICGTCWDQLYAFHNFYTSVEQAHKKLLQNTNEVAKIAETISTFESAVDGEAALQVEVNENVKQESGFSDSVAAAVKRRRGRPRKQLPGETAKAIDSNELKAVLEQINLNEIKIEFPEADLSIADVLDDQEDQNISDYLQQSEIESELAEAIAEPKQKRRRTIKKRRTKLKVVSKVKKIGVHNVKKSQEFNEYIREHYKVQCPVCNVHMDDFSDMLVHTRKEHNQRGYAMCCNRKFLKRGVLVDHLRRHQNPELFKCDICQRVMGQRRSLELHKRMHEIKERGRLYQCEQCSKSFYSSTVCERHKLTHIPKEQWHVPCTSCSKTFPNEYLMQQHVKLVHLRKFDKICDVCGKSIRGREALARHMEEHAGAPQKVIKCDLCESTLTTKYGLARHIKMMHTAENLQPMQCEICFKISPSLQAHQHHIKYTHNTARTHQCPMCEKAFKRPNELREHMTTHTGEVLYTCPHCPKTFNSNANMHAHRKKMHFKEWQEYHHRHQARHRKTDTIISVSVRKTTERTEAAAAAAVASTTSVEETTAEFVMETKDVDGHICGTCWDQLYAFHNFYTSVEQAHKKLLQNTNEVAKIAETISTFESAVDGEAALQVELNENVVQQESGFSDSVAAAVKRRRGRPRKQLPVETAKAIDSNELEVVLEQIKLNEIKIEFPEVDLSIADMLDDQEDQNISDYLQQSEIENELAESIAEPKKKRKTTYKKRHTKIKKLKVKKEKKEKKEKKDGVNNKTKSKEFNEYIKEHYKVQCPVCNIPMNDFAEMLVHTRKEHNQLGYAMCCNQKFVKQGVLVDHLKLHQNPEQFKCDICQRVMGLRRSLVLHMRMHEIKKRGRLYQCEQCSKSFYEARTYERHKLTHIPKEQWHVPCTVCSKTFPNEIVMRQHVTLVHLRKFNKICDICGKSISGREALARHMEEHAGAPQKVYKCDFCETTLRCKFSLAHHIKRQHTPENLQPTQCEICLKILPTQRAQKHHIKYTHNTARTHQCPMCEKAFKQAYALREHMTTHTGEVLYTCPYCPKTFNSNANMHAHRKKMHFKEWQEYHHQYKTLRRKKDTIISVSNRKTTERTEAAAAAAVVKVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -