Sred006827.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- pnr
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010000688.1:205834-210085[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1 5.3e+03 -2.9 0.6 18 25 61 68 58 68 0.73 2 2 7.2e-17 1.2e-13 50.3 3.0 1 35 564 597 564 598 0.98
Sequence Information
- Coding Sequence
- ATGTATAATGTACCACATAAGTATCGCCAAGTTTGTCGATTGTGCCTCACTTTGGTTAACGAGTGCGATATTGCAGATCTACAAATTTATAATACAAGTAGTGAGGCAAGCAGCAGTCccaatcaaaaatataaagccCAACATAATCACAACGTGAAATCGTgcaatattaatgaaaatgtatCCAAATGCGTTTGCAATGCCTTCGACCCAAATACATGTTGCTGTCaatgtgatgatgatgataactCGTTATCAGCCGTCGTCGCGCAATGCAATAATAATGAGACGGGTGGCTCATTCAATTCACATatgcataaaaacaattacaccACACCGAGTGTGccttcttctgctgctgctgcttctgcttctgcttctgcgtCTGCTCCTGCCAACCCGCCATGCACCAATATCTATGCTCGAATGTTTCCAAATAAAAAACGGCTGCAAACTGAAACGACAGCAGCGGAGTTACAATTTCAATCAACATCATCCACATCAtcctcaacaacaactacaacagccaATCAAGATTTAGAGCCTCAAAAAAGAGTTACTATATGCGAATCGGAGCAATCATTTTCACAATCGTGCCAATCGAATGTGGCCTACGATAATAcggcaaagacaacaacaacaacaacggcaacagcaacagcaacaactcccactaaaaatatatttcttcaaAACGTGGAGTACAATCAAGAGCATAAAGATGATTCATCACCGCCGCACATTACAATTCAGATATTCAACTGTCTCTCTATTAAGCCATTGCCGAACGATAGTTATCCATCCGTCGTTTGCTGTGACTGCCGAACCAAGCTTGAATCATTTTGGAAATTTCGCAATATGGCACTAAATTCACACTATGCTTTAAGGGAATTTTTGACATTATCAGAATCGTCTAAACTTAATCAAAACAATTTGGAAATGAAACTGGATGAAATTTTAAAGTCTTCATCGGAAGCAATAGCTGCAAAGGCACTGACTGAGCTGAGCAAATCTTCAAAAACAAGATACAGCCAACGCCAACCAACACTTGAtggtattttaaaattaaataaggaCAAGGATCGTCAGATTGTTAATGAGAATCAAATTAAAGAGTTTCAAACGCCTTTAATCTATTCTAATTTTTACCAATTGAACACAAATAAGAAACTGAATACCGACAGTATTGCTTCATGTCTAACGGACTCGGAGGACAGTTCCGattcaaataaattagaaaTGGACATCGCATCAGCTATCTATGATAGAAAGACACCGGAGAGCGTTAGCTCAGATCATGCAACAGATGCTGCTACCACTCAATTATGGCAAGCATTGGCTCGATCGGCCGCTAAAAGTAAAGATGAGAGTCGAGCAACGCAACTATTGCGAAATATGATGAGTCAATCATTTGTATTTCCAGCACCGTCAAATATAGCATTGACAAAAGTACCTGATGAGCCAATACCACTATTAAAGgACATGTCAGAATCTCAATCGAACGTTGTTAAAGTATGTCGAAGAAAGCAAAGTTTTCCTACTAAATCTGATTGCGTCGAGGGCCCAGACACTAAGGTGTCCGACACCTTTGTTCGTTCAGAAACAACAAATCCCGAAGGAATTAAAGATAAAAAGAGTCTAAAATGTATAAGCAGCACTGCATTATCCACTTCTCAAAAGGATATGTCATGCTCTAATTGCGGCactttgacaacaacaatttggagACGCAGCGCCCGCGGGGAAATGGTTTGTAACGCATGCGGATTATACTTCAAATTGCATGGCGTCAATCGACCCCATTCAATGAGACGTGATACCATCCATACTCGGCGCAGGCGTCCAAAGGAATGCGAGAAATCGAAGAAAAGAAATAGGCAATTAGCATGCAATTCGGCggttgaatttgaaaatgatAACATAAATAGCTCCATAGATTGCAAGAAGCTGGATTTGTCCATAAATCAGGAGGCTCCAACATTTTCAGATTCAGTATTTAACAAATTTAAAACGGAAATATCTGAGACAGTGGGAACTGCAGATACACTCAAAGatgttattttaaaacaaacaaaatcacaaTCTTTGCCTGAGTTCAATGAAACCCATGCAGGCGAGGAACTATCTGTACCTCTTAACCTTGTTTCCAGTGAAAATAATGCAAAGTTAACATACAAcgccaaataa
- Protein Sequence
- MYNVPHKYRQVCRLCLTLVNECDIADLQIYNTSSEASSSPNQKYKAQHNHNVKSCNINENVSKCVCNAFDPNTCCCQCDDDDNSLSAVVAQCNNNETGGSFNSHMHKNNYTTPSVPSSAAAASASASASAPANPPCTNIYARMFPNKKRLQTETTAAELQFQSTSSTSSSTTTTTANQDLEPQKRVTICESEQSFSQSCQSNVAYDNTAKTTTTTTATATATTPTKNIFLQNVEYNQEHKDDSSPPHITIQIFNCLSIKPLPNDSYPSVVCCDCRTKLESFWKFRNMALNSHYALREFLTLSESSKLNQNNLEMKLDEILKSSSEAIAAKALTELSKSSKTRYSQRQPTLDGILKLNKDKDRQIVNENQIKEFQTPLIYSNFYQLNTNKKLNTDSIASCLTDSEDSSDSNKLEMDIASAIYDRKTPESVSSDHATDAATTQLWQALARSAAKSKDESRATQLLRNMMSQSFVFPAPSNIALTKVPDEPIPLLKDMSESQSNVVKVCRRKQSFPTKSDCVEGPDTKVSDTFVRSETTNPEGIKDKKSLKCISSTALSTSQKDMSCSNCGTLTTTIWRRSARGEMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKECEKSKKRNRQLACNSAVEFENDNINSSIDCKKLDLSINQEAPTFSDSVFNKFKTEISETVGTADTLKDVILKQTKSQSLPEFNETHAGEELSVPLNLVSSENNAKLTYNAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -