Sred006206.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- -
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010000621.1:115864-122887[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.047 3.3 8.3 0.2 1 23 1363 1386 1363 1386 0.94 2 13 4.3 3e+02 2.1 0.2 1 23 1558 1580 1558 1580 0.91 3 13 0.00017 0.012 16.0 2.7 2 23 1583 1604 1583 1604 0.97 4 13 6.7e-05 0.0046 17.3 0.2 3 23 1612 1632 1610 1632 0.98 5 13 5.5e-07 3.8e-05 23.8 4.1 2 23 1639 1660 1638 1660 0.97 6 13 5.3 3.6e+02 1.9 0.4 5 23 1673 1691 1671 1691 0.96 7 13 1.3 90 3.8 5.4 3 23 1698 1719 1696 1719 0.93 8 13 0.46 32 5.2 0.3 2 23 1730 1750 1729 1750 0.95 9 13 5.3e-05 0.0037 17.6 0.4 1 19 1756 1774 1756 1778 0.95 10 13 1.5e-05 0.0011 19.3 0.5 1 23 1786 1808 1786 1808 0.98 11 13 0.0001 0.0069 16.7 7.6 1 23 1814 1836 1814 1837 0.96 12 13 0.00019 0.013 15.8 5.9 1 23 1842 1864 1842 1864 0.98 13 13 0.027 1.9 9.1 8.2 1 23 1870 1892 1870 1893 0.95
Sequence Information
- Coding Sequence
- atggtgGACTGTGTGCAGTGCCCCGTGTGCACTTTGTATTTGCATGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTCATTAAGGCATTGGTCCAAATGACCATTTCCGGCAACCCTGGCGGACTTGAAAGCGCCCTGGCGGCAGCTGTGACCTCTAATACCAaactcagcagcagcagcagcaaaaacgcTCTCTCAACAGACAGCGCTGCCCCAACGCCAGCTGCGGATATCAAGCCAGATGTTGCGCTAGtagcaccaacagcaacaacacaaccaCAATCACCActaccaccgccaccaccaacagcagcagcatctgcagcagcagcagcagcagcaacagcaacaaccagaACGCAATCAGCAGCACCCAAAGGTGTTGCACTGCTgggcagcaacagtagcaagaacaacaacaacaaccaattgAACAATCCACCGATTAAGGCAGTGAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCACatccaataacaacaacaacacacccACCATAAGCAACGTAGCCGCTGTCTATCCGGCAGCCCTGGCAACAGATTATCGTtacgaacagcaacagcagcagctgcatggCTTTCCACGTGGCACAAGCACCACACTGGTGATACCACAAGCGCCACAGCAGCACCATAACTTCTTGGCCAGCCAACAGTCGCCTGCGCACTTTGctcttcagcagcagcagcaacagtcgccCATGAAGTTTACatatgcaacagcagcgctgCCTCCGCCTCCGTTGCAGCTTTTTGCACAGCAACCGACGTCAACGCAGCCGCATCAGAAGCCTCCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAacacaaccaaaacaaacaacagcaacatcaaaaccaacaacaacaccagcagcagcaacaacaacagcaacacataaACGTACAACAACATAGCGTAAATGTAGCACCACCGAGTGGCAAACAacatagcaacaaaatccaaacGGATATCTTTCTAAATCCACCTCCACCGCCACAACTAACAATTCCATCAGCGTCTTCTGCGTCtgcgtcttcgtcttcgtcagCGTCGACCTCCTCACGACTGCAACatgcccaacagcagcagcagcaccaacaatcCCATGCAGCTAGCAGCAGTAACTATGCAGCTGCTAGCGGTTCCAGCTCCTCGATGTCTCCAATGTCCGCACGGGCCAGTAGCCGTCAGTCAAGTAATTCGCCCTTTGGTGCACTGCTTAATGCAGCGGCTCATGCTGCCTGCTCCTCACCCGCCGCCACCAGTGGAACATCAGTGTTGCGCTACGCCGAGTCGCCAGTGGCTCACTATCTGGAGCGGGAGAATGGGGATTTCATAGTGCAGGAGACGCCCAAACACATTGTCGAGTGTGTCGAGAAAGATGATGGAGAATTCTCGGTAATAGAGCGCATCTATCAGTCACCACCCAGCGTACTCCACAtacacgacgacgacgacgacgatgatgaagaggaggaggaggaagaacAAGAGGAAGATCAGAGTTGGGCAAACAgcgatgatgaggatgacgTTAAGGTGCCACTTGGACATGTCGAGGATGGTGACGATGAGCACGAGGATAGTCGCAGCCGTGCTGGCCCCAAAACCACAACGAAAAAGTCACGCAAGCCAAAGTCTACTGGCAGGATGCACAAACGACCCGCTAAGCATCAGTTGGTCACGGTGGAGGACGAGGATGACTTCCTGAGCATTGGTAGCAGTTGTGCCGAAAGCGATCATCAGCcagaggagcagcagcagcagcaatcgcaacagcagcagcagtcgccgcaacaacaacagcaaccacagccATCATCGTCGGCACAAGTGGCAAACACATCGCCCATGCAACTGTGCACGGCGCCTTCCACAAGCAGTGGATCAGCTGGCACTTGTTCCCCGAGCAGTTCCAAGTTCGCGGGCAGCGGCACCATCAAGTCCAAAAAGAATCGGGTGACGGTTCTCAGCGATGTGCCGCTCAACATGAACGAGTATCTGGATTTGGTGGGCAACATTGTGGCCTCCAGTCGCATTGGTGCAGCGCGTCCGTTTGCCGCTGTGGCGCCCATACCGTTGGTGAAGGTGGAAAAGGAGGAGCCAATGGACGAATACGAAGCCGAATCAATGGATATGCATTTGGAGCAAAAACCCAGCCTGGATCAtgccagtggcagcaacagcagcagcagcagcagcactggcCATGGCACAACCAGCGTCATACGCATGGCCAGCACCAGTTCAAATGTTGCTGCCGAAGATCTCACACAGCCGCCGCACATGAAGGTGGAGGTGGAGCCGACGGCACTGTTGCCACAACGCTTCTCGGCGCCCGGTCAGCTGCGTGGACCCAAGAAATTAGTCATCAAACCAAAGgtaacagcaacggcaacgtccacaacgacgacgacgacgacgacgacgaaaaaGACTGAGAACAACAAAGCTGCCGGTAGGAgtactagcagcagcagcaacagcaacaatagcaatagtaATTGCGCCGAATCCTACAGCATATCAGGAAATACGCCCGCCGACCTAGTGCAGATCAAGAACGAGAACGGCGACGCATTCACATCCAGTGGCAGCATATTGGAAAAGCATCTGCTGACCACCGGCTATGCTGCCGCACAGCAAGCACGCAAACACTCTGCCGTCAACGATGATGATGCACGTGTGCTGCTTGAGTTTGCCAATTCGAAGCAGATGCCAATGCCAGGCACAAGCAATCATACAACGTTTGTGGTGAATGCTGCGAGCTTTCCGTCAGCAGGTTCCGTATTTGCCACAAGCGGAGGCACTATCATTGGCAATGTGGATAAGTCAATCAATGCGAGCGATGAATACATTCTGCCAGATGACACTAAACTGGAGGTGGATGAAATTATGATATCGTCCTCGTCTTCCTTTGCCTCCACCtcgcagcagcaccaacatcagcaacatttacaacagcagcaacaacaacagcagcagcagcatcagcagcatcaacaacaatcttTGCAACAGGCGCATCCGTCCGCCTTCACGGACTTTAATTTTCTGTACCaccaaaacacaacagcaacatcagctggagcaacaccaacaacgacTGCATCCAATTTTTCACCATTTGgcattcagcagcagcaatcgctgcagctgcaacatccACAGCATGGCTCCAGCGAGGCAACTAATGCGGCAACGCTTGCTTCCTCCAGCAATTCGTCTGCCTTGGATCAGGAATGCTCGATGAATGCCACTTTCCGTGTGGCCAAGCCACAATCAATGCTAAGCGCTTGGTATCAaccacatcagcagcagcagcaccagcagcagcaggcaaccaCTTCATCTCACAGTTCGCATGTGGAGCAGCCCAGCAATTTTATTGCAGCTCTGTCCGCTGTCGACTGCTGCAATGCGGCCGTTGATAGCGATATCAGTGAGGCCAAATACTTGGATCTGGATGCCTGTAAGCGGGAACAGCTTAGCAATAGTAGCAGCCATTTGCCCTCTGCATCCACCACATCGTCATCGTTTCAAGCCGCTGCAACGGAGAGCAGTCTTGTTGGTGGTCTAGGTCTCAATATACGTACCGATGAGAAGATGCCAGCCAAGGGTGAAATATCCGAGCAGGAAAGCAACTGCGACATTGAGAACTCCTGGAGTCAATCGATGTATGGGGACATATCACAGCGTTACTTTAGGAATCAATTTTCGGATGGCTACAATCAGCAGCTGGCCGATTGGCGTCATGATTACTATCCGGCGCAAGATCTCAGTGGCCAACAGAGGGAGCACAAGCGCTTTGACTTTAACGCGGTCACCTCGGAGTACGCACAGCCGACAGAGCTGGAAGCTTCCTCAAGCTCAACTCGAAACAATCATTTGTTGGATGCACAGCCCACCACTTCGAAATCGTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCGACATCTCGCGCTGCCGCCGAAGCGGAGGCAGTTGCAGCTGCGCTGGCGCAACGAAAGCCACCACGTCGCAAGATCTACAAGTGTCCGCACTGTGTGGCTATCTTCGAGAAGCTAAAGGAGCGCAATGCCCACATGATTGCTGAGCACAACTATGTGCGTCAGAATCGTCGGCTCATCTGCACACAGGCGCTGGTCAACGCCGCGTTGCTGCAACAGCCGCCGGCTCAGCCAACAGAACAGCACCTagaccagcagcaacagcagcagcagcagcaacagttgctgcaggCGGGGCACAGCGCAGGCGGTGCCGAGCAGGAGGATTCCAAGGATGGCATTGTGAAGATCAAGCAGGAACACTGTCAGGATAAACAGGATTCAGGCTCGGAGCAGTTGCTGGAACAGTTGGAGCTGCCGGATGTCAAGGATGCGGGGCTGCTCGAGACCAGCGGTGATAACGTTCGCGATGCGGACATGAAGCCACCAACGAGCGTAACTGAGCTGGACCAAAAGCCAGGCATAGCACCGCTGGCCATGACGACACCAGCTGCCAAGTTGGCGGCTCTTTATCGCATGCTTATATCCTACAACGAATCCAAGCTGGGCCAAGAGCGCAACAATCTAAGCGAACTGGAGCAAAAGGCCATGGAGAAATCCATATTCTTGTGCTACATCTGCCGTACCGATTTTCCCTCTGTCAAGCTGTACGACGCACATCTAACGGAACATCCGGCCGAGTGTTTCACGTGCGGCAAGAAATTCTATCGTTGGAAAAACTTTTCGCTGCATTTGAAACGGCATCTGGGCTGGAAGGAGTTCGGCTGTTATGTTTGCGACAAAAAGTTCGTGGTGCGCAGCGCTCTCGTCGAGCACATGCGCATGCATACGGGGCAAACACCACTCAAATGCAAGATATGTGGTAAAAAGTTCAAGCGGTATTCGAACTTGACGCAGCATCGCAAGCGCCACACAAAGATGACAGTGCGCAAGAAGGAATATGTGTGCCACTGTGGCGAGGTGTTGCCCTCAAAGGCGCGCTTCCTGTGGCACAAGGAGACGCACGACTTGAAGCCCAAATGTTGTCCGTACTGTTGCGATCGTTTTGTGCATGCGAACTCGCTTCGTCGACACATTCGACTGGCGCATTCGGACAAGTTTGACTATGCCGAACCCATGGAGTGTCAGATGTGCAAACAGATCTTTGCAAAGACATCGATTAAGGCGCATATGGCGACGCATTCGACGGATCCGCAATACGATTGCGCCATTTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATACATTCGTGGGTGCATGCGAATCGTACGGCCAAACCGTTCAAGTGCGAGTATTGCCCCAAGGCATTCGTACGTGAATTGGACTTTAAGAATCACATGAATGCGCACAAGCAGATCAAGCCCTACACCTGCGAATATTGTGGTTGCAAGTTCATACGCAAGTACAACTATATGCGGCATCGACGTGAGCATCATGGCAACAAGAAGTTTACGTGCGATCAGTGCGACAAGTCTTTCCATCGCCACTACTATCTGATTGAGCATCGGCGGATTCATACGGGCGAGCGACCGTTCCACTGCACCATCTGTGGCAAGAGCTCGACCACGAAGACCAATCACAACAAGCATCTGAAAATTCATCATTCGCGCGATCCTTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDCVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTISGNPGGLESALAAAVTSNTKLSSSSSKNALSTDSAAPTPAADIKPDVALVAPTATTQPQSPLPPPPPTAAASAAAAAAATATTRTQSAAPKGVALLGSNSSKNNNNNQLNNPPIKAVKSAPPTTEAPATSNNNNNTPTISNVAAVYPAALATDYRYEQQQQQLHGFPRGTSTTLVIPQAPQQHHNFLASQQSPAHFALQQQQQQSPMKFTYATAALPPPPLQLFAQQPTSTQPHQKPPPAYGAAISQIRSQHNQNKQQQHQNQQQHQQQQQQQQHINVQQHSVNVAPPSGKQHSNKIQTDIFLNPPPPPQLTIPSASSASASSSSSASTSSRLQHAQQQQQHQQSHAASSSNYAAASGSSSSMSPMSARASSRQSSNSPFGALLNAAAHAACSSPAATSGTSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDDDDDEEEEEEEQEEDQSWANSDDEDDVKVPLGHVEDGDDEHEDSRSRAGPKTTTKKSRKPKSTGRMHKRPAKHQLVTVEDEDDFLSIGSSCAESDHQPEEQQQQQSQQQQQSPQQQQQPQPSSSAQVANTSPMQLCTAPSTSSGSAGTCSPSSSKFAGSGTIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPMDEYEAESMDMHLEQKPSLDHASGSNSSSSSSTGHGTTSVIRMASTSSNVAAEDLTQPPHMKVEVEPTALLPQRFSAPGQLRGPKKLVIKPKVTATATSTTTTTTTTTKKTENNKAAGRSTSSSSNSNNSNSNCAESYSISGNTPADLVQIKNENGDAFTSSGSILEKHLLTTGYAAAQQARKHSAVNDDDARVLLEFANSKQMPMPGTSNHTTFVVNAASFPSAGSVFATSGGTIIGNVDKSINASDEYILPDDTKLEVDEIMISSSSSFASTSQQHQHQQHLQQQQQQQQQQHQQHQQQSLQQAHPSAFTDFNFLYHQNTTATSAGATPTTTASNFSPFGIQQQQSLQLQHPQHGSSEATNAATLASSSNSSALDQECSMNATFRVAKPQSMLSAWYQPHQQQQHQQQQATTSSHSSHVEQPSNFIAALSAVDCCNAAVDSDISEAKYLDLDACKREQLSNSSSHLPSASTTSSSFQAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFSDGYNQQLADWRHDYYPAQDLSGQQREHKRFDFNAVTSEYAQPTELEASSSSTRNNHLLDAQPTTSKSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIAEHNYVRQNRRLICTQALVNAALLQQPPAQPTEQHLDQQQQQQQQQQLLQAGHSAGGAEQEDSKDGIVKIKQEHCQDKQDSGSEQLLEQLELPDVKDAGLLETSGDNVRDADMKPPTSVTELDQKPGIAPLAMTTPAAKLAALYRMLISYNESKLGQERNNLSELEQKAMEKSIFLCYICRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECQMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00583141;
- 90% Identity
- -
- 80% Identity
- -