Sred011348.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- -
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010001047.1:338740-342687[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0034 0.24 11.9 3.6 2 23 359 381 358 381 0.96 2 18 0.018 1.2 9.7 1.8 2 23 424 445 424 445 0.93 3 18 5.5 3.8e+02 1.8 3.0 2 17 456 471 455 482 0.75 4 18 1.3 88 3.8 0.8 3 23 486 507 485 507 0.93 5 18 1 70 4.1 2.0 3 23 515 535 514 535 0.90 6 18 0.00079 0.055 13.9 0.1 1 23 543 566 543 566 0.98 7 18 4.1e-05 0.0028 18.0 0.1 2 23 571 592 570 592 0.97 8 18 2.8 2e+02 2.7 0.1 1 20 600 619 600 621 0.88 9 18 9.5e-05 0.0065 16.8 0.4 1 22 640 661 640 664 0.90 10 18 2.4 1.7e+02 2.9 0.8 3 21 671 689 671 690 0.89 11 18 0.0012 0.08 13.4 0.6 1 23 709 734 709 734 0.97 12 18 0.011 0.78 10.3 1.4 2 23 750 772 749 772 0.93 13 18 0.0084 0.58 10.7 0.2 2 23 778 800 777 800 0.92 14 18 0.0022 0.15 12.5 0.2 2 23 804 826 803 826 0.96 15 18 3.3e-05 0.0023 18.2 3.0 1 23 832 854 832 854 0.98 16 18 0.012 0.85 10.2 0.8 1 23 858 881 858 881 0.94 17 18 1.1e-05 0.00076 19.8 1.1 1 23 887 910 887 910 0.97 18 18 0.011 0.76 10.3 0.5 1 23 914 942 914 942 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAAAGCGTAAAGAATACCAAAAATGTACCTAGCTGCCTGCATTGCAGAGCGTGCAATTCGAAACTACAATATCAGGAAGTATTCGATAAAGTGGGGATTGAAATAGGTCTTGCCAAACTAGTGGCAaagtattttcaaataattgtTCGACCAGACGCTGAAAAGCCGCAGTTGCTTTGTAAGGAGTGCGTAAATACCCTCATACGTTTCTTTGATATCGATGAACTTCAAAGGGAGCAAGATGCCTTAAAtgctgcaaaaagaaaaaaacctaaGGATGCAAAGATTGTAACACCAGTGTCGCAAGCACCCCTAGAAATCGCCAAAATTGATCGGGTGATTCCCGCCAAAAAGCAGACGGCCCCTGCGAAAACTGTTCAAATTTCTTCTAAAGTATTGGTCGCCGCACCGACAAAACAAGAAGAACCATCTTCGGATCTTGCTGCTGATATTGTTGATCCTTTAAGTGCTGCTTTGACAAAGGTGTCGTCAAAGTCAGTTAATGTTCGTATCACCCGGTCCAAAAACGTTTCGTCAAAAAAATTACCTATCAAAGTTAAGGAAACAGTCAAAGCAACTGTTGAAACAGACGCCAAACGTCGACGTTCCAAAGAAGCACCTCAGGGTGATCAGGAGCAGATTAGCGCGCTAATTCGTGATATTTTAGACGATGAGGAGTCGCCAGGTGATGACAAGCTGGTGGAAGTTACAAGTACAGTATGTCAGGTGGAGAAACAAACAGctgaagagcagcagcagtcgaaTGAGCCTGTAGAGGAAGATCAACAGGTACCCGAAGAGGAAGAGGACAATAATGAGCTGGAATTTCTGGTTGAGCGGGAAGATAACTCCTCAGAATTGGGTGTGCGACATTTTAAAGTGAAGCAAAAAATCAAACGCGATACATCGCACTCGCAAAATGAAAGCCAAAGCGAGGATGAGTCCTTTAAAGTGGAACCATTTAACTTTGTGCTTATCAAGGAATCTGATAACATTGGTGATTTATACGAGTATTTGGGCACTGTGGTAAAGACTTGCTTTGAGACCTTGACTTTCGATTGGGACACTGTGTGCCGACATTGCTCGTTGAAGTTTACCAGCTACGAAAGTCTATTTAGTCATATGCTTAAACGGCATGAGTTGtcgaaaaaacttttcaagtgtCCAATTGATGACTGCACTACTGAGCTGCAAGGTGGCAAATCTTTGGCGATGCATTTGGTTGTGCTGCATGCTCCGGTTGCTGATATACCTATTTATGGCAGTTGTCCTGAATGCAACATGACCTTCTCAAACATATTGCAGTACAACAAACACTCCTGCGCGCATATCATTAAAAAACGTCGTGGTATACGTCTATATTGTGAGATGTGCGGCTTGGAGTTTCCCTCCTGGAAGCGTTTTAATTTTCACAATCAATTTCATTTGGAGCGCCACAGGCCGCGCGCCTGCTTTGTGTGCAGCTATGCGGGTACAAATATTGATGAGCTATTTCATCATTTGCACTATGCCCACGAACCAGAGGGCACACCCTTTTGTGATCTCTGTGATCGCAATTTTCGTGACCATGCCATCTTTATGGAGCACAACAAATCACACTCAAATGTCAGTAGCACTACATACCCCTGCAACGAATGCAGTGCCAATTTTGAAACACGCGGTCGCCTCAACGGTCATTTGcGTACCGCACATGGAAGTGTCATTAGCTGCGAGCTGTGTGGACGCGAATTTGCCTCGGAAGCCACTTATAACGTACACATGAAAACGCATCTGATTATTGAACGTGAGGTGCATGTGTGCAACAATTGCGGTTTGCTAAGCGAAAACAACGAGAAGATGGTGTCTCATATATcggatgatgatgctgcttgCTTTGGCAGTGATGTTTTAGTGGAGATGATGCGCGATGCTTATGTTTGTGAATACTGCTCCGCGTACTTTAAGCAGAAAAGCGATTTACGTGCGCATCGCGATTCGGGTGTTCATAAGGATGGCCTCTTCTGGTGTCAGCCGTGCAACAAGGAGTTCGCTGAAATGAAACTTTATCGTCACCATTTGCGCAACTATCAGCAAATGCGCACAGATGTTGCGCATCGCAATCTCGAAATTTGTCTTTACTACATGTGCGATTTTGAGTATTGCGATGAGGCATATATCAATTGGAATTCTCTATACACTCACAAACGGCGAACGCACGATGCCGTCGAGAAGCTGGAACCCaagacaaaagaaaatgaatggATCTGTCAGTTTTGTCAGAAAGTGTGCCGCTCCAAAATGTCACTATCAGTGCACGTGGCACGTAGTCACAACAACAATAATGTGGTTTGTCCGCTTTGCAAAGCCTCATATAAAGATGATGAGGCTCTAAAAAAACATCACGCCTATTGGCATGAGCCAATGGAGTGTCCGTTGTGCTTAAAGGTTGTCAAAAATCGACGCAACTTTGATACTCACATGAATGTAGTACACTCAAACAATAAGCGTTACTCGTGCACTGAGTGCAAAAAAGGATTCTATCACAAGAGCGAAATGGAGGCGCATCGGCGGCTACATGCCGAATCTTTTAAATGTGAACAATGCAGCTTCACAACGAGAAACGAGAAATCGCTGTCGGTTCATGTTATGGGACAGCACTATAAGCGGTTTGCTTTTGAGTGCACCCAATGCGATAAGCGTTTCGGACGTCGCCAGGGACTCTCGAATCATATGCAGCGTGTACACGGCTGTAAATATACGTGTCGTGACTATTTTAATGGCGGCTGTAGCAAATCTTTTGCATCAACTACCCGGCTTAACGTGCATGTGCGTAAGGCACATAACAGCTACATTTTCCTGGCCGATGATCAAGTCAAGGAGGTCGAGGAATTGGCGAGTGATAGCCCATCGACATCAAAAAAACGCTCTATACGCACTAATGCTAACACTAATATTGAGTTTGTTGGCGATGCGTCTGATGGCGAGGATAACGAGAGTCAGACCAGCTCGGAAACTTTCGTCCAGTGTCGGGAAATAAAAAACGAAGCAAAGGAAccaccaaaaaagaaacaaaagcaatgtTTATAG
- Protein Sequence
- MSESVKNTKNVPSCLHCRACNSKLQYQEVFDKVGIEIGLAKLVAKYFQIIVRPDAEKPQLLCKECVNTLIRFFDIDELQREQDALNAAKRKKPKDAKIVTPVSQAPLEIAKIDRVIPAKKQTAPAKTVQISSKVLVAAPTKQEEPSSDLAADIVDPLSAALTKVSSKSVNVRITRSKNVSSKKLPIKVKETVKATVETDAKRRRSKEAPQGDQEQISALIRDILDDEESPGDDKLVEVTSTVCQVEKQTAEEQQQSNEPVEEDQQVPEEEEDNNELEFLVEREDNSSELGVRHFKVKQKIKRDTSHSQNESQSEDESFKVEPFNFVLIKESDNIGDLYEYLGTVVKTCFETLTFDWDTVCRHCSLKFTSYESLFSHMLKRHELSKKLFKCPIDDCTTELQGGKSLAMHLVVLHAPVADIPIYGSCPECNMTFSNILQYNKHSCAHIIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYAGTNIDELFHHLHYAHEPEGTPFCDLCDRNFRDHAIFMEHNKSHSNVSSTTYPCNECSANFETRGRLNGHLRTAHGSVISCELCGREFASEATYNVHMKTHLIIEREVHVCNNCGLLSENNEKMVSHISDDDAACFGSDVLVEMMRDAYVCEYCSAYFKQKSDLRAHRDSGVHKDGLFWCQPCNKEFAEMKLYRHHLRNYQQMRTDVAHRNLEICLYYMCDFEYCDEAYINWNSLYTHKRRTHDAVEKLEPKTKENEWICQFCQKVCRSKMSLSVHVARSHNNNNVVCPLCKASYKDDEALKKHHAYWHEPMECPLCLKVVKNRRNFDTHMNVVHSNNKRYSCTECKKGFYHKSEMEAHRRLHAESFKCEQCSFTTRNEKSLSVHVMGQHYKRFAFECTQCDKRFGRRQGLSNHMQRVHGCKYTCRDYFNGGCSKSFASTTRLNVHVRKAHNSYIFLADDQVKEVEELASDSPSTSKKRSIRTNANTNIEFVGDASDGEDNESQTSSETFVQCREIKNEAKEPPKKKQKQCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01320620;
- 90% Identity
- -
- 80% Identity
- -