Sred000485.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza reducta
Gene Symbol
-
Assembly
GCA_035044485.1
Location
JAWNNV010000069.1:4497-8447[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00062 0.043 14.2 0.4 2 23 143 165 142 165 0.90
2 12 5.8e-06 0.0004 20.6 0.6 2 23 181 203 180 203 0.95
3 12 0.34 24 5.6 8.8 2 23 464 485 464 485 0.97
4 12 1.1e-06 7.8e-05 22.9 2.8 1 23 491 514 491 514 0.96
5 12 0.00069 0.048 14.1 0.9 1 23 519 542 519 542 0.95
6 12 0.00019 0.013 15.9 5.7 1 23 560 582 560 582 0.96
7 12 0.00023 0.016 15.6 2.0 1 23 587 609 587 609 0.98
8 12 3.1e-05 0.0021 18.3 1.7 1 23 615 637 615 637 0.95
9 12 2.2e-05 0.0015 18.8 0.7 1 23 643 665 643 665 0.98
10 12 3.2e-07 2.2e-05 24.6 2.7 3 23 673 693 672 693 0.99
11 12 2.2e-07 1.5e-05 25.1 1.8 1 23 699 721 699 721 0.99
12 12 6.2 4.3e+02 1.7 6.5 1 19 726 744 726 749 0.87

Sequence Information

Coding Sequence
ATGCCGAACACCTATGGTCAATTTGATGCGAAGCGCGTCTGTCGAGTTTGCCTATGCGAAGTGGgaaatttttactttatcTACGATGAAGCGCCCATGGCGCTTGGCGTGAATATTGCACATATACTTAACGAATGCACACAGTACACCTGCGAGCGATACGATAAGATGCCGCATCACATGTGTGACACCTGCATTAAGGCCGCCTGCCAGGCGTATCGCTTTAAGCAAGATGCGGAGAAGGCATATCGCTCACTTGTGGCCATCCTGGGCCGCACACCAGTGAGCAAGCCAAACTGCAGCGATGTGTGTACCCAGACCGAACAGCTACCTATGCTTCCCTGTGGTATCTGCAATGACAAGTTTTTAAGCATGATCGAAGTGCGTTTGCACCGTAATCGCCAGCACAAGTACATGGGGGAGCTTAAGTGCAAACTGTGCGACGAACAATTTGCACAGCTGCGGCAGCTTCGTAACCACCTCGTGGAGCAACATGATCCTAAGTCGGCATCGGCAGCTTCATTTCTGAGGCGCCGTCTGGAATGCCGAGATTGCCAAAGGGTTTTCTCGCGACGGGATTATTTGCTTCGACACTTGCAATCCGTGCACAAAGTGAACGATCGAGGCCGTCGCCGGACGCTGGCTGCGGCGCAAGAAGTGCAATCGAAAGTGTCAACCTGGCTGCCCATCGACGAGGCAACTATGCATAGCGCTGACGAATTGAATTCGGCTGCTGTTTTGTTTAATGATCAAGCTGCCTGCTCCGATGACGAGGACGTCAATGATGACAACCAGATGAGCCATCAATGCCATACTAATCCCATATCAAGCAACGAAGAAGCTGACGATGAAGAGGTGCGTGAAGCTAAGCAATCATTGTGGCTGCACATTAAGCCAGAGCCAAAGCAAGACCCTGAATCAGGACCAGAGTCATTTGGGTCGTCAgtgaattttttaaatcgtCGCAAAAAAACATGTATAGAACGCGCATCTCGCATTGACTCAGAGGACGAGATCGACCGCCTGAACAACCAAAAAACGGCGAGCAGTGTCTTCGCAGCAGAGGTTAAAGAGGAGCCTCTGGTCACCGTCAGCAATCAACAATTACCGATTAAGCAGGAACGTCAGCGTGCTTATAGCGTCATTGAGGATGATGAGTACGAGATTGGGACCATATCAGCAAACACGGTTCAAGAGGGCGACATTAACGAAtatgacgacgatgatgaagacgaacaacaacatgcaGAACAAAAGCTGGAATCAGAAAACGAGTCCAAACTGACACAAGTGAAAACTGTGCGTGAGTATAGTCAGAAATCGACAGCTGGCAAACAGCGACGTTCTCGTGGCAAAAATCAAAGTGATGCAATATCGAATTCGGAAAATCGCTGTGATGTTTGCATGCGCACATTTTCCCGCCACTGCCATTTGTTGCGACACAAATTGTCGCATTTGGAAAAGAAACCGCACAGCTGCCCACACTGTCCCAAGGCGTTTGCACGGAGCGATCATTTAAAAGCGCACGTACAGAGCCTGCATTGTAGCAAGGAGCACAAATGTGTTCTATGCGAGGCTGCATTTTCCCGACTCGATTCCCTTGAACGGCACAAGATAAGCAAGCACAACGGCGAGGGCCTAGATGCTAGCAGTGAAATAAAGCTGCAAATAAACGAGCATACGTGCAAATATTGCGCCAAGCGCTTCTCCAGCAAGACTTATCTGCGCAAGCACACGCTGCTTCACACAGAATTCCTTTACGCGTGCAAAAGCTGCAACGAGACATTTAAGGAGCGCCAACAGCTGCGCAGCCACGAAAAGACGCACACCGGTCAGCGCAATTTCCTCTGTTGCATTTGCGGCGACAGTTTTGCACGCAATGATTATCTGCGCGTGCACATGCGTCGTCATAACGGCGAGAAGCCATACAAGTGTCGCTACTGTGTCAAAGCTTTTCCACGAGCCACTGATCTTAAGGTACATGAGCGCTATCACACCGGCACAAAGCCAAATCTTTGCAATACATGCGGCAAAAGCTTCCATCGCGCGTACAATTTGACTATTCACATGCGCACTCATACTGGCGAACGTCCCTATAGGTGCGACCAGTGCCCAAAGAGCTTCAGCCAGAGTAACGACTTAAAGGCGCACAAACGAAGGCATACAGGAGAGCGCTATAAGTGTCCGCACTGTGATGCTCACTATCTGCAGCTGTACCATATGAGAAATCATTGCCTCAGTGTCCATAACAAGCGTATTGAGACAAAAACAGGACGGCTACAACGCACAGGGCTTTTAGACGAACCCAATCACACGCACCTTACCACTGTGGTAATGCCCGCTGCAAGTTCTCAGCATTCAACAGCAGATCCACAAACGATAGCAACTGTTAGCACACTACTTCCGGCACTGTCGACTGGAACAGAAATTATTCATTCGCCGGTGACATATAACACAACGCCGCCAGTATCAGCGTCGGTACCAGTGCCAGTGCCAAAAGCTGCCGGAATGATGAGTGTAGCAAACAATGCAACAACGACGTCAACAGCAACGACACCTTTTGGTGTCATGATGGCGCATTTCAAGTACAATCACGGTGGCAATAGTCAGCAGAGCAACGCAAGCGGCGGTGACACTGGAAAATAG
Protein Sequence
MPNTYGQFDAKRVCRVCLCEVGNFYFIYDEAPMALGVNIAHILNECTQYTCERYDKMPHHMCDTCIKAACQAYRFKQDAEKAYRSLVAILGRTPVSKPNCSDVCTQTEQLPMLPCGICNDKFLSMIEVRLHRNRQHKYMGELKCKLCDEQFAQLRQLRNHLVEQHDPKSASAASFLRRRLECRDCQRVFSRRDYLLRHLQSVHKVNDRGRRRTLAAAQEVQSKVSTWLPIDEATMHSADELNSAAVLFNDQAACSDDEDVNDDNQMSHQCHTNPISSNEEADDEEVREAKQSLWLHIKPEPKQDPESGPESFGSSVNFLNRRKKTCIERASRIDSEDEIDRLNNQKTASSVFAAEVKEEPLVTVSNQQLPIKQERQRAYSVIEDDEYEIGTISANTVQEGDINEYDDDDEDEQQHAEQKLESENESKLTQVKTVREYSQKSTAGKQRRSRGKNQSDAISNSENRCDVCMRTFSRHCHLLRHKLSHLEKKPHSCPHCPKAFARSDHLKAHVQSLHCSKEHKCVLCEAAFSRLDSLERHKISKHNGEGLDASSEIKLQINEHTCKYCAKRFSSKTYLRKHTLLHTEFLYACKSCNETFKERQQLRSHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYRCDQCPKSFSQSNDLKAHKRRHTGERYKCPHCDAHYLQLYHMRNHCLSVHNKRIETKTGRLQRTGLLDEPNHTHLTTVVMPAASSQHSTADPQTIATVSTLLPALSTGTEIIHSPVTYNTTPPVSASVPVPVPKAAGMMSVANNATTTSTATTPFGVMMAHFKYNHGGNSQQSNASGGDTGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01321327;
90% Identity
iTF_01328026;
80% Identity
-