Sred009722.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza reducta
Gene Symbol
hang
Assembly
GCA_035044485.1
Location
JAWNNV010000906.1:485388-502621[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.34 24 5.6 1.0 3 23 559 580 558 580 0.93
2 18 0.99 69 4.2 3.2 3 22 687 706 685 706 0.89
3 18 0.00074 0.051 14.0 3.3 1 22 801 822 801 824 0.90
4 18 0.085 5.9 7.5 0.1 2 21 836 855 835 856 0.93
5 18 0.00086 0.059 13.8 0.2 2 23 997 1019 996 1019 0.95
6 18 0.0025 0.17 12.4 0.1 1 23 1027 1050 1027 1050 0.96
7 18 0.0031 0.22 12.0 0.1 3 23 1139 1159 1138 1159 0.93
8 18 0.00035 0.024 15.0 2.9 2 23 1265 1287 1264 1287 0.97
9 18 0.028 1.9 9.0 0.2 2 23 1296 1318 1295 1318 0.95
10 18 0.0017 0.12 12.9 0.3 1 23 1331 1354 1331 1354 0.97
11 18 0.00015 0.011 16.1 1.1 1 23 1406 1428 1406 1428 0.99
12 18 0.0024 0.17 12.4 0.9 1 23 1436 1459 1436 1459 0.96
13 18 0.084 5.8 7.5 0.4 2 19 1467 1484 1467 1485 0.94
14 18 0.00019 0.013 15.9 0.3 3 23 1583 1603 1582 1603 0.97
15 18 0.0062 0.43 11.1 0.1 1 23 1638 1660 1638 1660 0.97
16 18 0.00073 0.051 14.0 0.6 2 23 1752 1774 1751 1774 0.93
17 18 0.1 6.9 7.3 1.0 3 23 1830 1850 1830 1850 0.98
18 18 4.5e-05 0.0031 17.8 2.5 1 23 2251 2273 2251 2273 0.99

Sequence Information

Coding Sequence
ATGTGCGACGCTgtcgcaacaacaatatcagcaGTAACAGGAACAGGAGCCAGCTCAGCGGGCGATACAATGACAGCGATGGAAGAACAAAAtcagcgacagcgacaaagTTGCTGTCGTCTATGCATTGCTCCCGCTAGCGAATGCATTTCGATTATAAACAGTTATGCGGCCGATAAGGAGCCGCTGgccacaaaaatatacaactgCGTAAATATCAAGATCACATCCGTGGATCGTCTATCGTTGCACATTTGCCATGCCTGCATCAGTTATTTGAACTCTTGGCAAAGCTTTAAGAATCGCTGCCTCAGCTCACAGACCAAGCAGCGTCAATGGCTGGAGAACGATAAGAGCAAACAGCAGACGCTACTCGGATACTTGGATTTGAACAGGGCCGAGAATGGCAGCAGTGCCATtgagaaacaacagcagcaacaacaacagcagcagcagcacgaaTCGAAAATCGATGCAGCGACGAGCGCTGCGGAAAAGGCTTCCGCAGCCGCCAACATTTTGGATGGCATACCTCAGCTGAAGAAACGCAAATCGTTAACAGTCTATGTGAGTCCAAAGCAACAGctgctacaacagcaacaaaaacaatcgcagcagcagcagcagcaacaacaatcgctaCAACAgtcacagcaacagcttcagcAACcgaacgcaacaacaacaacagcagcagcggcagcagcagcagctgcagaaagaacaacaagcgcaacggcagcggcaacgGCGCCAGAGTCACAACAAACATTACAAACCCTTTTGTTGCAGGTGCCCATAGCgacaacacaacagcagcaacagcagcgcaaatatcaacatcagcaacagcaacaacgtggcaagcagcagcaatatcatcatcatcatcagcagcaacaacatactcagcatcatcaacagcaacgacaGAGTCGCATTCGTCAACCGCGAcgcaagcaacaacatcagcagcaacatcagcagcaacatcagcagcaacagcaacatgcatCAACAGCATCCGTACAGCGTTTATCATCCGgcagccaaaaggcaaaattgtatttgccaTTGGATATAACAGTGCCGCCGTTGCCACCAATATTGCCGCCGCTGTTGCAGTCGGCCACGTtgtcaactgttgttgctaatgCATCAGccccattgccattgccattgccattgccgttgTCGTTGCCGCTGCCACTTGATTTCAGCCAGAAtacaaatccaaatccaaatccaaataaTAGTCAAAGGCAAGCGCCGCCGCCGTCGTTGCCTccagttgttgcaacaatgACCAGCAACATGGCagccactgctgctgcaacgtCCTCTGCCACAGCCTCGGCCACTcttggctctggctctggcggTGCAGTCACGACTCCATTGCTTATGCCTCCGCTGCCTGCCGTGCCCATCAAGGATGAGCCTCTGGACGATACGGATGATGATTTTCAAATGAAGTGCATCGATGAATCGGATGACATGATGGATCCAACAATGTTCCTAGAGCGCTCCGAGCATGAGGGCGATGTGCCACTAAATACCTCCGACTATGATTATACGGCTCAACATTGCGTGACGGCAGTTGTGGCGGCGGCTTCGCTGCCCGCCAGCGCTGTTGCAAATGTGGCAGCCGCTGGCGACTCAAAGGTGGCCAGTTGCCGTGCCTGCAGTCTACAATTCTCGACGCGGGCAAATGCGCGACGCCACGAGCGCAATCTGCATCCGAATCTGTTTCAGTTGTCGACAGACTCACCCAATAATACGCCCATTACAAAGCCGACACCAGCATTGGCGGCCGCATTGGAGATACAGCGTGCCGCTGCCGCGGCCGCTGCCACCGCCGAAGCAACAAAGGCAGCTGCCGGTGGCAATATATCGGCACAAAAGTATCGCCAGGTGGTCATGAACACGTTCATCAAGTGCGAAAACGGTGGCTTCGACTACGACAATCCCGAGCAGTATCAGCAACTGTTGTCGCGCGACAAGGTCGACTTCATCAACGAGAACAATGAGTTTCTCGAGCAATATCAGACGATGACCTGTCGCTGTTGCAACAAATACTTCAATACCTACAAGAACTTTATGGCCCATGTGCGCAAAAAGTATCCATTGTTGCCGCGCAATCTGTGCTTCAATTGTCTCAAGATGAACGATTCCAAGGCGCTCTTTATATCGCATCTGAAGAAGCGCAACTGCATCAATTTGTATCGTGTGCTGAACGCATTGCGCACGACGCAACCAAACTTTGTCCATGCCGCCAGCGCAGAAGCAAGTGCTGCAAGTGCTGTTGCGGCAACACCAGTGGCGGCAACGCCAGCACACGACACATCCACGGATCGTCCCGAGAAGTTGCGTGCCAAGGAGCTGCTGGTCAATAAACTGTACGAGTGCAAATTGTGCCCAAAAGGTTTTCGCACCAAGCACGAGTTTCGCACCCATGTCTACGATAAGCATGCGGATGTGCAGCGCAAGGATAACAATTCGATACAGTGCAGCTTCTGTGGCTTGGACTTTGCCGATCCGGTGGATCGGCGTCGTCATTACAACAACATGGACTGCATTGTGCGTTTGCGCTGCATGACCTGTGATGCCAAATTGGAGACGCATCAGCGCTTCCTTGATCATGTCTATCAGGATCATTTGGGCGGCGTGAGCAGCGATAATGCCTCGACGGCGACTAGTGGCTTGGATCACTCGCCACCCGGCAAGCGTAGCCTATTGGGTGCCCTGGGCATTGGATCGAATGATGAGTCgcgcagcagtggcagcaatcacaacagcaacaacaaagacaacactgcaacagcagcagcagcagcagcaggtaatGCTGCAACTGGAACGCCATTAACCTCAACACCgaaagtagcagcaacaacggcagcagcaacagctgcaggcACAAGCGGCGGATCTACATCGGGCGGACGCGATGCACCCAAATCGCAGTATTTTTCACGCATGCCACAGGTCTGTCCGATCTGTGGCCAGCAGTACAATAACTATAACAACGTGCTGCGACACATGGAATCGAAGCATCCCAACAAGCTGCCAGAGACATATAAATGTGTACGCTGTGGCCTCGGCTATCCGCGCATCTCCTATCTCCGTGAGCACATGATCAATGTACATGGCGTGGACAAGAATCGTCATTCGGGCGGCTTTGAGTATATTGTGAATGCCGATGCTGTTAAATTGGCGGATGGCAGCACGCCCAATGTCTATACGGGACGTTACGATTATGTGATGAAGGATTTAATATCTATAAACAATGGTGGGACACTCgatgatgatgatgaggaaaGCGGCAGCATTGCAAAAAAGATGCGTTTAGAtgatagcagcaacaacagcagcattgcGAACATGGGCATTGCCGCCAACCAGCAGAAGGAGTGCATCATCTGCAATGCAGTGTTTAGCAACAATATTGGTCTCTCGAATCATATGCGTTCGCATTATACGGCCTCGACAGCGACAAGTGCTGCTTTGGCGGCGGCCAATCGCATGACGCCCAAATCGTTGACAATAACGGCAACGCCGCCGTTGGAAACGGCTGCGGCAGCAACGTCGACAGTGGCAACATCCAAAACAACACTTAcatcgacgacgacgacaaccaaattagcagcagcaacaacaaatgctgtGGAGCTAGGAGCAAAGACAAGTGGTGGCAATTTACCGCCAGCGATGGTCCATCAGACGGCACAGGAACAAGCGGTATTCCGTCGTAGCTTGGATCAGGCAGCTGATCGACGTTTCCGTCGCATGCGTTGTCGCATCTGCCAGCGACGATTTAGCTCAAAGAAATCGTATCGCTATCACATGCTAACCGATCATCAGGTGCAGAATGTACAGTTCATCAAGTGCAAGCTATGCAATGCCGAATTTGCCTACGAAAAGGGCCTGAAGGTGCATCTGTTCAAGGTGCACGGTCGAGCCATCAAGGATGAGATGATTATCAAACAATTCGAATGCGATGTCTGCTCCACGGTCTACAGTTCCGAATTGGAATTGCAGCAGCACAAACGCAGCGTGCACAAGTCAACCCATTCGATTGCCAGCGATTCAGTTGCGGGCAAATCaacatcatcctcatcatccaCATCGAAATCTGCTACGACTACCTCAGCTGAACTGCTGGCCGCCGACACATTAGGCATGGCGGCGGCAGCGATTCTGCCGCTGTACTGGTACCAGTGCAAGTATTGTCCATCTAACTTTAACACCAACAAGAAACTGGCCATACACATTAATTCGCACGATGAGTTCGACTCGAATGATTATTCGTGCAAGGATTGTGGCAATGTTTACAGTGGTCGCAAAAGCCTTTGGGTTCATCGCTATAAGAAGCATCCGCAGGTGCCGGATCCGGCCGAGTGTACGCTGTGCCGCAAGATGTTCTTTGATCGGCAAATGCTTGAGAATCATACACCAACCTGCAATCGGAAGCCAATCACTGCCACTGGCGCCCATCAGCAGCaggatcagcagcagcatttacAAATGCAACACCAACGTGTCATCTTCAAGCACAAAACGggcgacgatgatgacgacgagggtgatgatgatgatcagctactgctgctggacgatggtggtggtgttggtgctgGTGGAGGCAGTGATAgtaatggtggtggtggtccatcaacagcggcagctgctgccgcagcaacaataaaGACAAGCACAATGAAGATACGCATACCCGAGGTGGCATGCACCATTTGTGGTGCACGATTCACCGACCAGGAAATGTTCAGCAAACACATCGAGAAGCACGAAAAAGATCTCTATGTTGACGATCCCTTGGCGGCCATGTTCGATGATGGCCCAGCCGATGCCGGACAATTTCAGGTGGAGCGTCAAAACGAGAACGGCGAATACGCGTGCGATTTGTGCGCCAAGACGTTCCCCCAGGTGATAGCGCTCAAGGTGCATCGCAAGTGGCATTTCAGAGGTGATAGCAAGCAGaaTCCAACCATCGATGGCGAAGCGACAACgttgaacagcagcagcaacaacaacaacaacaacaacaattcgcTGAGCTCATCATCGATGCTGCATCTGCGCGAATTGCATGCTGTGGGCCTGATGcccaaccagcagcagcaccagaaacagcaacaacagcaacaacagcagcaactgcaactgcaactgcaacagcaacgacaacagcagcgtCCGAGCAGCAAATCAATGAAACGGAAACGTGAACTCAAATGCGAATACTGCGCCTCCACattcatcagcaacaacaatctgcGTCGCCACATGTACGAGCTGCACAAACATGAGGTCAGCAATCTGCCCGAGCCGCCCGTCATTGAGGTGGATGAGCCGTTGATGTGTCGCCGCTGCGATAACCTACAGTTTGAGACCAAAGAACTATGGATCGAACACAAAATAGCCGATGCGAAAGTTGTGCGTCCATTCTGTCCATTCCAATGGGGCTGTGATTTGTGTGGCGAGTATTTGTCGCGCAAAGAGAAGCTGCTCGATCACATCCACAATCATCTCAAGGAGGATGTGATTGTGCCGGTGGCGACCACAAAGCCGCCAGCAAAGACACCAGCATCAACCACAATTGCAGCCGTGACAGCAAAGGAaacagccgcaacagcagaggtagcaacagcaacatcgaaGATAAAACcctcaacaacagcagcagcagcagcagcgacgaaAGATTTAAAGGCTTATAAACAACAGAACCGGGATCGGGAtcaggcagaggcagaggcagaggcagagacggaggctaatgatgatgatgatgtgaaGCTAGCAAAGGAGCATCATAGTGATATGGATGATGATGAAAGCGATAGTGGgggcgatgatgatgaagggGCCAGCACTAGtgctgacgatgatgatgatgacgacgacgacgacgatgatgatgatggagaagatgatgatgatgatgatgatgaaggcgacgtcgatgatgatgatgatgtggatgacgatgacgatgatgttgTGGcgcagcaattgcaattgcaacagcagccacaaagtgcgaacaacaaaaataataatagcacaATTGTtgataacgatgatgatgacctCATCGAGGAGGTAATCGATGAGGATGGCATTGTTGTCGAGCAGctggacgatgatgatgatgatgatgtcgaggatgatgatgatggtgatgacgacgatgacgatgatgatgatgacatcGATGAGGATGacgttgatgttgatgatgaggGCAACTCAATGAatgggcaacaacagcaacagcaacagccgccaAGGCGtctcaattttaattactcgcgcaccaacaacaacaacaaaaacagcgaCCGGCTAAATGGCGACAGCAGTGGTAAACAGGAAACAGTGGATAATGGGGGTGAGGAGGATATGCGTactgatgatgaagatgatgatgctgtGGGCGAGGCGATGACCATTGATGATATTATTGAAGAAGATGATGGTGtggatgaagatgatgatgacatcGTTGAtgtcggcggcggcggcggcggtggtgttGTTGAGGATGACGACGATAACGAtgataacgatgatgatgttggtgaGGGCAtggatgaggatgatgatgtcGTGGGCAATGGTGTTGATCGTGATggtgcaacatcaacatccgaAAGCgaatcgacaacaacaacaatatcgcATTCAACAACTGATGGCGCTGCCGCTGATCACGCTAATTCCAGCTATACGTGTGATCTATGTCAACTTTGTTTCGATTCCCAGGAGCAACTGCAGACACATATTAAAAGTCATTTTCTCAATGGGCCATCATCTTCGGCGGgaagcagcaccagcagcagtggcaaaagcaccaataacaacaacaacagcagcaacaacaataacagcaacaaaaccaaaaccaaaaagtcCAGCTTGGAAGCAAcgaagacaacaacagcaaaaacaccGAATGCTGCAACGGGCTCAAACTGA
Protein Sequence
MCDAVATTISAVTGTGASSAGDTMTAMEEQNQRQRQSCCRLCIAPASECISIINSYAADKEPLATKIYNCVNIKITSVDRLSLHICHACISYLNSWQSFKNRCLSSQTKQRQWLENDKSKQQTLLGYLDLNRAENGSSAIEKQQQQQQQQQQHESKIDAATSAAEKASAAANILDGIPQLKKRKSLTVYVSPKQQLLQQQQKQSQQQQQQQQSLQQSQQQLQQPNATTTTAAAAAAAAAERTTSATAAATAPESQQTLQTLLLQVPIATTQQQQQQRKYQHQQQQQRGKQQQYHHHHQQQQHTQHHQQQRQSRIRQPRRKQQHQQQHQQQHQQQQQHASTASVQRLSSGSQKAKLYLPLDITVPPLPPILPPLLQSATLSTVVANASAPLPLPLPLPLSLPLPLDFSQNTNPNPNPNNSQRQAPPPSLPPVVATMTSNMAATAAATSSATASATLGSGSGGAVTTPLLMPPLPAVPIKDEPLDDTDDDFQMKCIDESDDMMDPTMFLERSEHEGDVPLNTSDYDYTAQHCVTAVVAAASLPASAVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSPNNTPITKPTPALAAALEIQRAAAAAAATAEATKAAAGGNISAQKYRQVVMNTFIKCENGGFDYDNPEQYQQLLSRDKVDFINENNEFLEQYQTMTCRCCNKYFNTYKNFMAHVRKKYPLLPRNLCFNCLKMNDSKALFISHLKKRNCINLYRVLNALRTTQPNFVHAASAEASAASAVAATPVAATPAHDTSTDRPEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGLDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGVSSDNASTATSGLDHSPPGKRSLLGALGIGSNDESRSSGSNHNSNNKDNTATAAAAAAGNAATGTPLTSTPKVAATTAAATAAGTSGGSTSGGRDAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINVHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYTGRYDYVMKDLISINNGGTLDDDDEESGSIAKKMRLDDSSNNSSIANMGIAANQQKECIICNAVFSNNIGLSNHMRSHYTASTATSAALAAANRMTPKSLTITATPPLETAAAATSTVATSKTTLTSTTTTTKLAAATTNAVELGAKTSGGNLPPAMVHQTAQEQAVFRRSLDQAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGRAIKDEMIIKQFECDVCSTVYSSELELQQHKRSVHKSTHSIASDSVAGKSTSSSSSTSKSATTTSAELLAADTLGMAAAAILPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQVPDPAECTLCRKMFFDRQMLENHTPTCNRKPITATGAHQQQDQQQHLQMQHQRVIFKHKTGDDDDDEGDDDDQLLLLDDGGGVGAGGGSDSNGGGGPSTAAAAAAATIKTSTMKIRIPEVACTICGARFTDQEMFSKHIEKHEKDLYVDDPLAAMFDDGPADAGQFQVERQNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQNPTIDGEATTLNSSSNNNNNNNNSLSSSSMLHLRELHAVGLMPNQQQHQKQQQQQQQQQLQLQLQQQRQQQRPSSKSMKRKRELKCEYCASTFISNNNLRRHMYELHKHEVSNLPEPPVIEVDEPLMCRRCDNLQFETKELWIEHKIADAKVVRPFCPFQWGCDLCGEYLSRKEKLLDHIHNHLKEDVIVPVATTKPPAKTPASTTIAAVTAKETAATAEVATATSKIKPSTTAAAAAATKDLKAYKQQNRDRDQAEAEAEAETEANDDDDVKLAKEHHSDMDDDESDSGGDDDEGASTSADDDDDDDDDDDDDDGEDDDDDDDEGDVDDDDDVDDDDDDVVAQQLQLQQQPQSANNKNNNSTIVDNDDDDLIEEVIDEDGIVVEQLDDDDDDDVEDDDDGDDDDDDDDDDIDEDDVDVDDEGNSMNGQQQQQQQPPRRLNFNYSRTNNNNKNSDRLNGDSSGKQETVDNGGEEDMRTDDEDDDAVGEAMTIDDIIEEDDGVDEDDDDIVDVGGGGGGGVVEDDDDNDDNDDDVGEGMDEDDDVVGNGVDRDGATSTSESESTTTTISHSTTDGAAADHANSSYTCDLCQLCFDSQEQLQTHIKSHFLNGPSSSAGSSTSSSGKSTNNNNNSSNNNNSNKTKTKKSSLEATKTTTAKTPNAATGSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01325809;
90% Identity
-
80% Identity
-