Sred005644.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza reducta
Gene Symbol
Deaf1
Assembly
GCA_035044485.1
Location
JAWNNV010000606.1:840630-843469[+]

Transcription Factor Domain

TF Family
SAND
Domain
SAND domain
PFAM
PF01342
TF Group
Other Alpha-Helix Group
Description
The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.1 8.7e+02 -0.4 0.0 8 36 98 126 91 139 0.82
2 2 8.3e-30 7.1e-26 89.6 0.7 2 76 195 269 194 269 0.97

Sequence Information

Coding Sequence
ATGGAACAGGATTCCACAACTGAGCTGCATCTGAGCAGAATACGTGAAGTGAAAGATTTGGCCGCATTAACCGACGACGTGCGCGATGTTGTGAAAGAAGAGGTCATATTAGAgaatcaccatcatcatcagTTGGATACGAAAGTTCGCATGGTCACATCCTCATCAAACgacaacagcggcagcggcggtggtggtgttgtATCAGTACCCGTATCTCTGCCCATCGGATCAATGCTAACTGGAGCGTCATTTAATGTGATTACGCCGGATCAGTTGCCGCACTATAAACCGATGCTGTGCGTCGACAACAATGGCTATCTGTCCAGCAGCACGGTCAGCATGGGCGGCGACCTCAAAACGATTGTcattcaacagcagcagcaacagcagactCAGCAAACGAGCAGTGCTGGGAACACAAACACCACCGCCACAAACACCATTGGACTGAATCATGATGGCTCTGGTAGCAATAATAGCCACGACAGCATGGGTACGCTCGAACATGCTgccggcggcggtggcggtgctGGGAACACAACTGGCTCCACCGGCTGGGCGGAAACAACATCTAGCACACAGCACATGGAGGTGTTCCAGATCCGTTGCAAAACCACCTGCGCCGAACTCTATCGCAGCAAACTGGGCTCTGGCGGCCGAGGGCGTTGCGTTAAATACAAAGACAAATGGCATACACCCAGCGAATTTGAGCACGTCTGCGGCCGTGGCTCCAGCAAGGATTGGAAACGTTCCATCAAATATGGCGGCAAATCTCTACAGTCGCTCATCGACGAGGGAACGCTAACACCGCACGCGACCAACTGCAGTTGCACAGTCTGCTGTGACGACGAAGCAGGTGAGTCAGCATCGGGGCCTGTGCGTTTATTTACGCCCTATAAGCGACGAAAGCGAAATCAAACCGATCTCGATGTGGAACCGGGGCCCAAACGCAAACGCAATACAcatagcaacaataataataataacaacaatagtaacaccaacaataacaacaacaacacaagtggcagcagcatcaacaacaacgtggACCCAACGCAAGCAACCGCCACCAGTGTGGTGGATGAtagtaatttgtttttaaccgATGAAAACATAACGTCCAAGGATGAACCATGGGCGGCGCTCAATGACAGTTTAGACACCTCCACCGAACTGGTTGACCAAACACAAATGGGCAATCCGTACGAGCGTGAAACGTTTGTGGTGAATATCAATGATGCGGGCTCGATTGCCGTCTTAGACGGCAGTCAATCGATGAAGAACATCGATCACGTCTACTGCACCATGGTTAAGGCAACCAACGATTTTAAGCGCCAGTTCAACGAAATGAAGCAACACTTTGAGCGACGCATTGAAGTGCTGCAAAAGGAGCGTGACGCAGCGGTCAGTGCGATGCGTGTCCAAGTCCATACAGACATGGATGATCCCAATATATCCGGCTCATTACATGGCAACGAGATCATATCGGCAAAGAAATGCGCCAACTGTAATAGGGAGGCGTTGGCCGAATGCTCGCTGTGTCGAAAGACGCCGTATTGCTCGGAGTTTTGCCAGCGTAAGGATTGGAATGCTCATCAAGTGGAGTGCGCAAGGAATCCACAAACGTCAACGCAACAGGTCATGTTATTGATCGATGATCAGTCCTAA
Protein Sequence
MEQDSTTELHLSRIREVKDLAALTDDVRDVVKEEVILENHHHHQLDTKVRMVTSSSNDNSGSGGGGVVSVPVSLPIGSMLTGASFNVITPDQLPHYKPMLCVDNNGYLSSSTVSMGGDLKTIVIQQQQQQQTQQTSSAGNTNTTATNTIGLNHDGSGSNNSHDSMGTLEHAAGGGGGAGNTTGSTGWAETTSSTQHMEVFQIRCKTTCAELYRSKLGSGGRGRCVKYKDKWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDEGTLTPHATNCSCTVCCDDEAGESASGPVRLFTPYKRRKRNQTDLDVEPGPKRKRNTHSNNNNNNNNSNTNNNNNNTSGSSINNNVDPTQATATSVVDDSNLFLTDENITSKDEPWAALNDSLDTSTELVDQTQMGNPYERETFVVNINDAGSIAVLDGSQSMKNIDHVYCTMVKATNDFKRQFNEMKQHFERRIEVLQKERDAAVSAMRVQVHTDMDDPNISGSLHGNEIISAKKCANCNREALAECSLCRKTPYCSEFCQRKDWNAHQVECARNPQTSTQQVMLLIDDQS