Sred004747.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza reducta
Gene Symbol
mbr-1
Assembly
GCA_035044485.1
Location
JAWNNV010000490.1:255186-265499[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.4e-09 7.5e-06 25.5 0.0 2 43 365 407 364 409 0.86

Sequence Information

Coding Sequence
ATGCGCCGGAATGAGCAGCCGGTtgaaactgctgctgttgccgctgctgttgccgctgctgcagctggcgCCTGTGGCACACTTGAGGTGCCAGCCAAAGGCTTAGAACGCGTCGCTGAGGAATTCATGGGTCGCAGGAAATGGAAACATTATCAAGATCTACTGACGCGCAGCCAATTGAATATCGCCGAGCAACAGCCCATATCAATAACAACTTTAGAAACAGAAGACAGCGACTATCAGAAGCCACTGAACCACCGTTTAGCGCAGCCCAACGGCAAACatttcagcaacagcaataacagcaacgaTACATTGCAATTTGAAGAAGAATTTGacaacaactacacatCACACGACCACGACTCAAGTGCAACATCACGTAGTAGCTCCGGCTCACCATCACCACCGCCAGAACCCAACGATTGGACACCGTCTGATAAGTGCAATTTCTGTGTTAACGGTCGCTTGCTAACGGTGAATGCCAAAGGCGAATTGGTGGCCGAAACAACGGCAACCGCGTCTCTAcacaatattaacaacaacgGCATAGCTGAGCATCAGcacgacagcgacagcaactcGAGCGCATCACTGCACAATAGCTCTagaaatatcaacaacaacaataagaacaataataataacaacaacagcaagcataGAGCACGCAACGGAACAAACACCGCCACGACGTCATCATCAGCGAGCACAATAGAACTTTACAAGCTGTTCACCCAGCAAGCAACTGAAATGACATCGATGGAATCAATGGCCGCCAAACTGGCACAGTTCACAATGATGGCCGATTTCAATTTGATGAGCACGCTGgccaatcaacaacaacagcaacaacaacaaccgcaacaacatgCTAACTCGGTAACACCAACTACCTCGGAAGTAtctgccgccgccgcagccGCCGCTGCCAGTCCCGCACTCAAAGACACATCCAGTCCCAGTGTGGATGCACCCTTGGATCTAAGCAGCAAGCCATCGCCAAATTCATCGATTAGCGGCGATATAAAGACAGCCAGAGCTCTGTCTGAGTGTGTCACGCCCATTTCAGCAGCACGACACAACTACAGTCACGAGGATCTGAATAGTGCGCTGCAAGATGTGCTGGTCAGTAAAATTGGTACACGCAAATCATCCAAGGAGTACCATGTGCCGCGTTCCACGTTGCGCAACAAGCTGACCAAAATGTCGCTGGGTGCAAAGCGACCGAATGCTCAGACGCCGGCAGAGCTGCAACACTACCTGGACCTGGAGCAGGATGAACAGTCTGGTGAGGAGGCTGGCGACGGCGATAGTAATGCGTCAACGCCAGCGCCAGGCATTCAGGAGATTGCCCAACGCTTTGTGGCTAACGAGCATCTGCGCAAGCTCAGCTCCATGTCTGAGCACAATGGCAGCGAGCTGGGCGATGATCTCGATCCCGCCATGTCGCCAAAGTCATCGCGGACGCCACAGCGAGATGGCACACCAACGAGCATGCAatcggcagcggcagcagcagccgttgcggcagcaacagctggtGGCAATAGCAATGCCACTGGACTGCCAATGCCCATTGATGCCCAAGTGCTGTTGCATGCACTGGTTCTTGCCTCAGGTATTGGTGTCATACCCAAGCTGGACGAGACACAGACGCTGGGTGATCTATTCAAATCGCTGCTGATGGCCAACAGTGGCGGCATGATGAATGAGACGCTGACATCTGGACACGAGAGCAATGGCAGTGCCACGCTTCTTGATCAGCgcctgttgcaacaacagcagcaacaacaactgaatgcTGCCTATCGTCGCCATTTACCAAAGTCTGAAACGCCTGAGACGAGCTCCTCGCTGGATGCCAATGAGGCGTGCGAGGATCCCATACTGAAGATTCCGTCCTTCAAGGTTAGCGGCGCACCGAGCGTCTCGCCCACACTgcgttgcaacaacagcagcaacagcatgactaacagcggcaacatcaataacaacaacaactcaaataGCAGCAATCGCAATGGCGACCACAGTCCACACTCTGCCTCACCAatgctggcagcagcagttgctgccgCAGCGGCCAACAACACTTACAGACAgagcggtggcggcggcagcaacagcagcagcaacaatctgTTGTCAGCATCGCCAACATCGATACAAAAGATGATGGCCAATACCATACAGCGCAAGATCAATGAGCAGAGCAGCCAGGACTGTCTgcgcaacaatggcaacaccAGCGGCAGcgagtgcagcagcagcggtggcggtggcggcaaCAGCAGTGCGAGTCGCAAGCCGAGCATATCGGTGGCCAAAATGATTGGCGGCACAGACACCTCACGTTTTGGGGCATCACCGAATCTGCTATCGCAACAACATCACAGCCATCTGCCACCCGCACATCATTCGgcccaccagcaacaacagcaccattCGCATCAGCATTCGCACtcgcatcagcatcagcagcttcAGTGCCCAGGATGCAGCGGCGCTGGCAGCTGGCAAGGGAACCCGGCCGAAGCGTGGTAA
Protein Sequence
MRRNEQPVETAAVAAAVAAAAAGACGTLEVPAKGLERVAEEFMGRRKWKHYQDLLTRSQLNIAEQQPISITTLETEDSDYQKPLNHRLAQPNGKHFSNSNNSNDTLQFEEEFDNNYTSHDHDSSATSRSSSGSPSPPPEPNDWTPSDKCNFCVNGRLLTVNAKGELVAETTATASLHNINNNGIAEHQHDSDSNSSASLHNSSRNINNNNKNNNNNNNSKHRARNGTNTATTSSSASTIELYKLFTQQATEMTSMESMAAKLAQFTMMADFNLMSTLANQQQQQQQQPQQHANSVTPTTSEVSAAAAAAAASPALKDTSSPSVDAPLDLSSKPSPNSSISGDIKTARALSECVTPISAARHNYSHEDLNSALQDVLVSKIGTRKSSKEYHVPRSTLRNKLTKMSLGAKRPNAQTPAELQHYLDLEQDEQSGEEAGDGDSNASTPAPGIQEIAQRFVANEHLRKLSSMSEHNGSELGDDLDPAMSPKSSRTPQRDGTPTSMQSAAAAAAVAAATAGGNSNATGLPMPIDAQVLLHALVLASGIGVIPKLDETQTLGDLFKSLLMANSGGMMNETLTSGHESNGSATLLDQRLLQQQQQQQLNAAYRRHLPKSETPETSSSLDANEACEDPILKIPSFKVSGAPSVSPTLRCNNSSNSMTNSGNINNNNNSNSSNRNGDHSPHSASPMLAAAVAAAAANNTYRQSGGGGSNSSSNNLLSASPTSIQKMMANTIQRKINEQSSQDCLRNNGNTSGSECSSSGGGGGNSSASRKPSISVAKMIGGTDTSRFGASPNLLSQQHHSHLPPAHHSAHQQQQHHSHQHSHSHQHQQLQCPGCSGAGSWQGNPAEAW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-