Sred013108.3
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- kn
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010001204.1:140412-144133[+]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-119 9.9e-116 387.3 0.0 205 384 1 209 1 213 0.99 2 2 8.2e-07 0.002 16.4 19.7 424 530 216 335 209 344 0.65
Sequence Information
- Coding Sequence
- ATGAGAAGATTTCAGGTGGTCATATCCACCCAAGTGGCCGTTGATGGACCACTTTTGGCCATCTCGGATAATATGTTTGTGCATAATAACTCGAAGCATGGCAGACGGGCCAAGCGATTGGACACAACGGAAGGTACAGGCAACACATCCCTGTCCATTTCCGGTCACCCCCTAGCGCCCGACAGTACCTACGATGGTCTCTACCCACCGCTACCCGTGGCTACACCCTGTATCAAAGCGATATCACCGAGCGAGGGCTGGACAACAGGTGGCGCCACCGTGATCATAGTAGGTGACAACTTCTTCGACGGTCTGCAAGTGGTTTTCGGCACAATGCTGGTATGGAGCGAGCTGATCACATCGCACGCGATAAGGGTACAAACACCGCCCAGACACATACCGGGTGTCGTTGAGGTAACGCTATCCTACAAGAGCAAACAGTTCTGCAAAGGATCACCCGGAAGATTTGTCTATGTCTCAGCACTCAACGAACCCACAATCGACTATGGTTTCCAGCGGCTGCAGAAGCTCATACCACGACATCCCGGCGATCCGGAGAAACTGCAAAAGGAGATCATACTGAAGCGTGCGGCGGATCTTGTCGAGGCACTCTACTCCATGCCCAGCAGATCGCCCGGTGGCTCCACCAGCTTCAACTCCTATGCGGGTCAGCTGGCCGTCAGCGTACAGGATGGCTCCGGCCAGTGGACAGAGGACGACTATCAGCGTGCCCAGTCGAGCAGTGTTAGTCCACGCGGCGGTTACTGCAGCAGCGCCTCAACGCCCCACAGTTCGGGTGGTTCGTATGGGGCAACGGCAGCCACCGCCAGCGTTGCAGCCAGTTCGAATGGTTATGCGCCTGCACCCAATATGGGCACACTCTCCTCATCCCCGGGCAGCGTCTTCAACTCCACATCAATGTCGACGCCTTGGCACTCGGCCCTTGTGCAGCATCATCATGTGaccgccgccaccgcctccgccgccgccgccagcagcaaccatcatcatcattcgcATCATCATTATCCGCATCCGCTTCAGCCGTGGCACAATCCGgccgtagcagcagcaacagcggcggcCGTTTAA
- Protein Sequence
- MRRFQVVISTQVAVDGPLLAISDNMFVHNNSKHGRRAKRLDTTEGTGNTSLSISGHPLAPDSTYDGLYPPLPVATPCIKAISPSEGWTTGGATVIIVGDNFFDGLQVVFGTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQKLIPRHPGDPEKLQKEIILKRAADLVEALYSMPSRSPGGSTSFNSYAGQLAVSVQDGSGQWTEDDYQRAQSSSVSPRGGYCSSASTPHSSGGSYGATAATASVAASSNGYAPAPNMGTLSSSPGSVFNSTSMSTPWHSALVQHHHVTAATASAAAASSNHHHHSHHHYPHPLQPWHNPAVAAATAAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00530692;
- 90% Identity
- iTF_01549315;
- 80% Identity
- iTF_01326903;