Spol001103.1
Basic Information
- Insect
- Scaptomyza polygonia
- Gene Symbol
- -
- Assembly
- GCA_035044585.1
- Location
- JAWNNU010000151.1:3934893-3941205[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.048 5.2 8.3 0.2 1 23 1359 1382 1359 1382 0.94 2 13 4.4 4.7e+02 2.2 0.2 1 23 1547 1569 1547 1569 0.91 3 13 0.00017 0.019 16.0 2.7 2 23 1572 1593 1572 1593 0.97 4 13 6.7e-05 0.0073 17.3 0.2 3 23 1601 1621 1599 1621 0.98 5 13 5.6e-07 6e-05 23.8 4.1 2 23 1628 1649 1627 1649 0.97 6 13 5.3 5.7e+02 1.9 0.4 5 23 1662 1680 1660 1680 0.96 7 13 1.3 1.4e+02 3.8 5.4 3 23 1687 1708 1685 1708 0.93 8 13 0.14 15 6.9 0.2 2 23 1719 1739 1718 1739 0.96 9 13 5.3e-05 0.0058 17.6 0.4 1 19 1745 1763 1745 1767 0.95 10 13 1.5e-05 0.0017 19.3 0.5 1 23 1775 1797 1775 1797 0.98 11 13 0.0001 0.011 16.8 7.6 1 23 1803 1825 1803 1826 0.96 12 13 0.00019 0.021 15.8 5.9 1 23 1831 1853 1831 1853 0.98 13 13 0.028 3 9.1 8.2 1 23 1859 1881 1859 1882 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAGTGTGCAGTGCCCCGTATGCACTTTGTATTTGCATGCGGGCATGAATCTTTCCGATCATTTGGAGACACATCCCAAGGAGCAGGTTATTAAGGCACTGGTGCAAATGACCATTGCTAATAATTCTGGTAGACTGGAAAGCGGTCTGGCGGCAGCGGTGATatccaacagcaacagtagctCTAACGCTGCCTCAACAGACAGCGCTGCCCTAACTGCCGCTGCTGACGTTAAACCAGATGTGGTGAAAGAACCACCAACTACACCACCGCCaccatcaacagcagcagcagcagcatcagaagcaacaaccacaacgaAATCAACAGCACCAAAATCTGTCGCATTGCTGGGCaacgccagcagcaacagtagcagcagcagcagcagcagcaacaacaacatcaacaacaacaacaacaaactgaacAATCCACCGATTAAGGCAGTTAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCACCACAtccaacagcgacaacaacacaCCCACCATAAGCAGCGTAGCCGCTGTGTATCCGGCAACCCTAGCAACCGACTATCGCTACgaacagcagccacagcagcagctgcatggCTTTCCACGTGGCACAACCACCACATTGGTGATACCACAAGCGGCACAGCAACACCATAATTTCTTGGCCAGCCAACAGCCGCCTCCGCTCTttgctcatcatcatcagcagcagcagcaacaacaacaacaacaacaacagcatcagtCAACCATGAAGTTTACatatgcagcagcagcgctgcCTCCGCCCCCTTTGCAGCTTTTtgcacagcagcagccaacgtCAACGCAGCCGCATCAAAAGCCACCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAgcacaaccaaaacaaacaacaacaaaaccaacaccagcagcaacagcaacaaataaacgTACAACAACATACCGTAAATGTAGCTCCACCGAATGGCAAACAACACATCAACAAAATCCATACAGATATCTTTCTGAATCCACCTCCACCTCCACAGCTGACACTTCCATCAGCATCGTCTTCGTCTTTATCGTTGTCTTCATCATCGACACCCTCAAGACTGCAACATCACCAACAGCACCACCAACAAACCCATGCAGCtagcggcagcaacagcaactatgCTGCTCTCAACTGTTCTAGCTCGTCGGTGGCTCTTATGTCAGCGACAACGTCCGTACGCACCACTAGCCGCCAAACAAACAATTCGCCCTTTGGTGCACTGCTTAATGCAGCGGCTCATGCTGCCTGCTCCTCACCCGCTGCCTCCACTGGAGCGTCAGTGCTGCGCTACGCCGAGTCGCCAGTGGCCCATTATCTGGAGCGGGAGAATGGTGATTTTATCGTGCAAGAGACGCCCAAACACATTGTGGAGTGTGTCGAGAAAGATGATGGTGAATTCTCGGTAATTGAGCGCATCTATCAGTCACCACCCAGCGTACTCCACATacacgacgacgacgacgacgaagaagaagaagaaggcgATGAAAGGGAGgaggaagaagaagaggcAGAAGAGGAGGGTTGGGTAAACAGCGATGATGAGGATCACGTTAAGGTGTCAGATGATCATGTCGAGGATGGTGACGATGAGCACGAGGATAGTCGCAGTCGAGTTGGTCCCAAAACCACAACGAAAAAATCACGAAAAACTAAACTGAGTGGCAGAATGCACAAACGTGCCACCAAGCATCAGCTGGCTCCGACAGAGGATGAGGATGATTTCATGAGCATTGGCAGCAGTTGTGCTGAAAGCGATCATCAGGCagaggagcagcagcaacaacaaccccAACAGCAGCATTCACAGCCGTCATCATCGTCTGGAGCTCAGGTTTCAAACTCAACGACAGCGCAACCTTGCACGGCGCCTTCCACTAGCTTTGCGGTAGCCGTTACTTGTGCCTCGAGCAGTTCCAAGTTCCTTGGTAGCGGCACCATTAAGTCCAAAAAAAATAGGGTGACGGTTCTGAGCGATGTGCCGCTCAACATGAACGAGTATCTGGATTTGGTTGGCAACATTGTGGCCTCGAGTCGCATTGGTGCAGCGCGTAATTTTGACGCAGTGGCGCCCATACCGCTGGTCAAGGTGGAAAAGGAGGAGCCAATGGACGAATACGAAGCCGAACCGGTCGATATAGAGTTAGAGCATAAGCCCAGCATAGAGCATGCCATtggcagcagtagcagtaattgcagcagcagtggcCATGGCACCACTAGCGTCATACGCATGGCCAGCACAAGTGCAAACATGGCTGCCGAAGATCTCACACAGCCGCCGCCCATGAAAGTAGAGGTAGAGCCAACGGCGCTGTTGCCGCAGCGCTTCTCGGCGCCGGCTCAGCTGCGTGGACCCAAGAAATTAGTCATCAAACCAAAGgtaacggcaacggcaacgtcTACTACGGCAACGACGACGACCACGACGAAAAAGACTGAGAACAGCAAAGCTGCCGGTAGCAGAagtagcaatagcaacagtAATGGCAGCGAATCACACAGCATATCAGCAAATACGCCCGCCGAGCTAGTGCAGATCAAGAGCGAAAACATCGACCCCTCTACATCCAGTGGCAGCATATTGGAGAAACATCTAACCAACAGCTATGCGGCACAGCAGGCACGCAAACACTCCGCCGTCAACGATGATGATGCTCGGGTGCTGCTCGAGTTTGCCAACTCGAAGCAGCAGCCATTGCCAGGCACGAGCAATCACACAACGTTTGTAGTGAATGCGGCCAGTTTTGCGTCAGCGGGTTCTGTATTTGCCACAAGCGGCAGCAATAGCAGTGTCAACGTGAACAAGTCAACGAAGCCGGGCGATGAATATATTCTGCCCGATGATACTAAACTGGAGGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTATGCCTCCACCTCgcagcaacagcgacagcagcatatgcggcagcagcagcaacatgaacatcagcagcagctgcaacatcaacaatcttTGCAACAGGCGCAACCGTCCGCCTTCAATGACTTTACTTTTCTGTACCACCAAAGCGCATCGACTGCGACAGCAGCTACAGccgcatcaacaacaacagcttccAATTTTACACCATTTGGcattcagcagcagcaacaacaacatctgcATCTGCAACATCCACAGCATGGATCAAGCGAGGCAACAAACGCAGCTACGCTTGCATCCTCCTCAAGCAACTCGTCCGCCTTGGATCATGAGTGCTCGATGAATGCCACTTTCCGTGGGACCAAGCCACAATCAATGCTAAGCGGATGGTATCAACCacatcagcaacatcagcagcagcagcaactgcagcagtcGACAACATCTTCTCACAGCTCGCAGCCCAGCAATTTTATTGCAGCTCTATCTGCCGTCGACTGTTGCAATGCAGCCGTTGATAACGATATGAGTGAGGCCAAATACTTGGATCTGGATGCCTGTAAGCGTGAACAGCTCAGTAATAGCAGCAGCCATTTGCCCTCTGCATCCACCACATCCTCATCGTTCCATGCCGCTGCTACAGAGAGCAGTCTCGTAGGTGGTCTAGGTCTGAATATACGCACCGATGAAAAGATGCCAGCCAAGGGTGAAATATCCGAGCAGGAAAGCAACTGCGACATTGAGAACTCTTGGAGTCAATCGATGTATGGGGACATATCACAGCGTTACTTTAGGAATCAATTTACGGATGGGTACAATCAGCAGCTGGCTGACTGGCGACACGACTACTATCCGGCGCAGGATCTCAGTGGCCAACAGAGGGAGCAAAAGCGCTTTGACTTCAATGCAGTCGCCTCGGAGTACGCACAGCAAACCGAGCTAGAAGCTTCCTCAAGCTCGATTAGAAATATTCATTTGTTGGATGCACAGCCCACCACTTCCTCATCGTCATCGGCATTGTTGGCTGGTCCACCAATTGCCTCGACATCACGCGCAGCCGCCGAAGCGGAGGCTGTTGCAGCAGCGCTGGCACAGCGAAAGACAGCACGTCGCAAGATCTATAAATGTCCGCACTGTGTGGCCATCTTTGAGAAGCTTAAAGAACGCAATGCCCACATGATTGGTGAGCACAACTATGTTCGTCAGAATCGTCGTCTCATCTGCGCACAGGCGGTGGTCAATGCCGCTATGCTGGCACAGCCACAAGCTCAGCAGGTAGAACACCAACAagagcaacagttgctgccgGCGGGTCACAGCACAGATGCAGCTGTGCACGAGGATTCTAAGGATGGTATTGTAAAGATCAAGCAGGAACATTGTCAGGATAAAAACGATGCAGCATCGTCAGAGCAGATGCTAGGACAAATAGAGTTGCCAGATGTCAAGGATGCTGGGCTACTTGATGCCAGCGTTGAAAATGAACGCGATACGGACATGAAGCCACCAACTAGCGTTACTAATCTGGACGAGAAGCCAGGCATAGCACCGTTGGCCATGACAACACCCGCTGCCAAGTTGGCGGCTTTATATCGCATGCTTATCGCCTACAACGAATCGAAGCTGGGTCAGGAGCGCAACAATCTTAGCGAACTGGAGCAAAAGGCTATGGAGAAATCCATATTCTTGTGCTACATCTGCCGCACCGATTTTCCCTCTGTCAAGCTATACGATGCACATCTAACTGAACATCCAGCCGAGTGTTTTACGTGCGGCAAGAAATTTTATCGCTGGAAGAACTTTTCGCTGCATCTGAAACGCCATCTGGGCTGGAAGGAGTTTGGCTGTTATGTCTGTGACAAGAAGTTTGTTGTGCGCAGCGCTCTCGTCGAGCATATGCGCATGCACACTGGCCAAACACCACTCAAGTGCAAGATATGCGGTAAAAAGTTCAAGCGTTATTCCAACTTGACGCAGCATCGCAAACGTCACAGTAAAATGACGGTACGCAAGAAGGAATATGTGTGCCACTGTGGCGAGGTTCTGCCATCAAAGGCACGCTTCCTGTGGCACAAAGAAACGCACGACTCAAAGCCCAAATGCTGTCCTTACTGTTGCGATCGTTTTGTGCATGCCAACTCGCTGCGCCGACACATTCGGCTGGCGCATTCCGATAAGTTTGACTATGCTGAGCCCATGGAGTGTCCCATGTGCAAACAGATCTTTGCCAAGACATCAATTAAGGCGCATATGGCGACGCATTCAACAGATCCGCAATATGATTGCGCCATTTGCAACAAGAGCTTCTCtaccaaatggaatctcaagATACATTCGTGGGTCCATGCCAACCGCACAGCCAAACCGTTCAAGTGCGAGTACTGCCCAAAGGCATTCGTACGCGAATTGGACTTCAAAAACCACATGAATGCGCACAAGCAAATCAAGCCCTACACCTGCGAGTATTGTGGTTGCAAGTTCATACGTAAGTACAACTATATGCGGCATCGACGAGAGCATCATGGCAACAAGAAGTTTACGTGCGATCAGTGCGACAAATCTTTCCATCGCCACTACTATCTGATTGAGCATCGGCGTATTCACACTGGCGAGCGACCGTTCCACTGCACTATCTGTGGCAAGAGCTCGACCACAAAGACCAATCACAACAAGCATCTGAAGATTCATCATTCGCGCGATCCCTTCACTGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIANNSGRLESGLAAAVISNSNSSSNAASTDSAALTAAADVKPDVVKEPPTTPPPPSTAAAAASEATTTTKSTAPKSVALLGNASSNSSSSSSSSNNNINNNNNKLNNPPIKAVKSAPPTTEAPATTSNSDNNTPTISSVAAVYPATLATDYRYEQQPQQQLHGFPRGTTTTLVIPQAAQQHHNFLASQQPPPLFAHHHQQQQQQQQQQQQHQSTMKFTYAAAALPPPPLQLFAQQQPTSTQPHQKPPPAYGAAISQIRSQHNQNKQQQNQHQQQQQQINVQQHTVNVAPPNGKQHINKIHTDIFLNPPPPPQLTLPSASSSSLSLSSSSTPSRLQHHQQHHQQTHAASGSNSNYAALNCSSSSVALMSATTSVRTTSRQTNNSPFGALLNAAAHAACSSPAASTGASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDDDEEEEEGDEREEEEEEAEEEGWVNSDDEDHVKVSDDHVEDGDDEHEDSRSRVGPKTTTKKSRKTKLSGRMHKRATKHQLAPTEDEDDFMSIGSSCAESDHQAEEQQQQQPQQQHSQPSSSSGAQVSNSTTAQPCTAPSTSFAVAVTCASSSSKFLGSGTIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARNFDAVAPIPLVKVEKEEPMDEYEAEPVDIELEHKPSIEHAIGSSSSNCSSSGHGTTSVIRMASTSANMAAEDLTQPPPMKVEVEPTALLPQRFSAPAQLRGPKKLVIKPKVTATATSTTATTTTTTKKTENSKAAGSRSSNSNSNGSESHSISANTPAELVQIKSENIDPSTSSGSILEKHLTNSYAAQQARKHSAVNDDDARVLLEFANSKQQPLPGTSNHTTFVVNAASFASAGSVFATSGSNSSVNVNKSTKPGDEYILPDDTKLEVDEIVISSSSSYASTSQQQRQQHMRQQQQHEHQQQLQHQQSLQQAQPSAFNDFTFLYHQSASTATAATAASTTTASNFTPFGIQQQQQQHLHLQHPQHGSSEATNAATLASSSSNSSALDHECSMNATFRGTKPQSMLSGWYQPHQQHQQQQQLQQSTTSSHSSQPSNFIAALSAVDCCNAAVDNDMSEAKYLDLDACKREQLSNSSSHLPSASTTSSSFHAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYNQQLADWRHDYYPAQDLSGQQREQKRFDFNAVASEYAQQTELEASSSSIRNIHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKTARRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICAQAVVNAAMLAQPQAQQVEHQQEQQLLPAGHSTDAAVHEDSKDGIVKIKQEHCQDKNDAASSEQMLGQIELPDVKDAGLLDASVENERDTDMKPPTSVTNLDEKPGIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYICRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHSKMTVRKKEYVCHCGEVLPSKARFLWHKETHDSKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00583141;
- 90% Identity
- -
- 80% Identity
- -