Basic Information

Insect: Scaptomyza polygonia
Gene Symbol: L
Assembly: GCA_035044585.1
Location: JAWNNU010001690.1:1746896-1754202[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9.9e-06 0.0011 19.9 2.9 1 23 160 182 160 182 0.98

2 18 0.34 37 5.6 6.2 1 23 188 210 188 210 0.97

3 18 1.6e-07 1.8e-05 25.5 3.2 1 23 216 238 216 238 0.99

4 18 1.2e-05 0.0013 19.6 0.4 1 23 244 266 244 266 0.99

5 18 0.62 67 4.8 0.1 2 23 340 365 339 365 0.86

6 18 0.00013 0.014 16.4 0.7 2 23 396 418 395 418 0.96

7 18 0.027 2.9 9.1 0.7 1 23 483 505 483 505 0.97

8 18 0.005 0.54 11.4 0.1 2 23 513 534 512 534 0.91

9 18 9.3e-05 0.01 16.9 0.1 1 23 542 566 542 566 0.94

10 18 4.4 4.8e+02 2.1 0.3 2 20 572 590 571 591 0.91

11 18 5 5.4e+02 2.0 1.6 2 23 602 624 601 624 0.95

12 18 0.0025 0.27 12.4 1.1 1 23 675 698 675 698 0.97

13 18 0.0063 0.68 11.1 1.6 2 23 869 891 868 891 0.96

14 18 0.11 12 7.2 0.1 1 23 897 919 897 919 0.92

15 18 0.54 58 5.0 0.4 2 23 927 948 926 948 0.93

16 18 0.95 1e+02 4.2 0.5 2 23 1046 1067 1046 1067 0.94

17 18 0.023 2.5 9.3 0.0 1 23 1077 1099 1077 1099 0.96

18 18 0.00048 0.052 14.6 1.3 1 23 1104 1126 1104 1126 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9.9e-06	0.0011	19.9	2.9	1	23	160	182	160	182	0.98
2	18	0.34	37	5.6	6.2	1	23	188	210	188	210	0.97
3	18	1.6e-07	1.8e-05	25.5	3.2	1	23	216	238	216	238	0.99
4	18	1.2e-05	0.0013	19.6	0.4	1	23	244	266	244	266	0.99
5	18	0.62	67	4.8	0.1	2	23	340	365	339	365	0.86
6	18	0.00013	0.014	16.4	0.7	2	23	396	418	395	418	0.96
7	18	0.027	2.9	9.1	0.7	1	23	483	505	483	505	0.97
8	18	0.005	0.54	11.4	0.1	2	23	513	534	512	534	0.91
9	18	9.3e-05	0.01	16.9	0.1	1	23	542	566	542	566	0.94
10	18	4.4	4.8e+02	2.1	0.3	2	20	572	590	571	591	0.91
11	18	5	5.4e+02	2.0	1.6	2	23	602	624	601	624	0.95
12	18	0.0025	0.27	12.4	1.1	1	23	675	698	675	698	0.97
13	18	0.0063	0.68	11.1	1.6	2	23	869	891	868	891	0.96
14	18	0.11	12	7.2	0.1	1	23	897	919	897	919	0.92
15	18	0.54	58	5.0	0.4	2	23	927	948	926	948	0.93
16	18	0.95	1e+02	4.2	0.5	2	23	1046	1067	1046	1067	0.94
17	18	0.023	2.5	9.3	0.0	1	23	1077	1099	1077	1099	0.96
18	18	0.00048	0.052	14.6	1.3	1	23	1104	1126	1104	1126	0.97

Sequence Information

Coding Sequence: ATGATGGCCTTAAAGATGTTATATCGCGGTCCTAGTTCGCGTTTGGagaatttaattgaaaagaTTCAAGCCACCAAGGAAATAACAAATAACGATATGTACGGCACGCATACCTCCTCGAGCTATTCCCCAAGCATCTCGGATGGCACACTGACACCCAACTCGGTACAGCAGCCAAAGTCCGAGGAACCCCAAACTGAAGAGTCCAAGTCCAAGGCAAATGGTGAAGGTTCTGCTATGGAACAACAGGACTTAGCCAAGCCAAAACGACCAGCTCATTTgcatcatcaccatcatcattatcatcaccAGCAGGCGCTGAAAATTGCCAACAAGCTGCGCAAAATCAATAAGGAAGCCAAATTGGCAGCAGCCGCTGGAGCCGCAGCAGGACATGGAGGTGCAGGAACCGGAGCAGCCGCCAACAAGTTTGATAAGTTGACAGGCGAAAGCATTAAAAGTCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCACGTCTCGGCTACTTGAAGCATCACGTGCAGAGCCATGCCGAACATTTGCCTTTCAAATGCGAATACTGCGCCAAGTTATTCAAACACAAGCGTTCCCGCGATCGTCATAAGAAGTTGCACACAAACGAAAGGAACTACAAGTGTCCGCACTGTGAGGCAGCTTTCTCAAGAAGCGATCATTTAAAGATTCACATGAAGACGCACGATATACAGAAACCGTTTCAGTGCAGCATGTGCAATCGTGGATATAATACAGCAGCCGCTTTAACCTCCCACATGCAGAAGCACAAGAAGAATGCTGCAATCCTAGCAGCTGGTGGCAATCCTAATGCTCTGAATTATAGTCCACGTTCCACGGGTTCTGCCTCAATCTCCAGCAATGGTAGTTTACACAAGCGTCGCTATGCTTTGGCTCTCGCTTCGGATAGCAGTCCAAGTCGTCTGGAGTTCCCTAAGCGGGCACGTGCTGGAGTAGTTCCAACAACGCCTACTCCAACGCCCCAATTGAGATGCAGTTTCTGCAGTCCCAAAGTAATGGAATTCAGCAGTTTGGAGCAGTTAAATGCACATCTTCAGGCGGCACACgagaaacagcagcaacagggaGGTCGAAGCTCTGCAACCATAACCAACACTACAGAGACAGTAGAGCCTCCCACAAATGGTTTTCAGCTCAATTGCGAATACTGTACAATGAAATTTGTCAACATAGCGTCTCTTTTTCAACATATGCGAACGACTCATTTGGATCGTCTGAGCAGTCCAAATTCCTACTATGAACACTTCAATCGTCTGGCAACTGCAGGCACATTTAGTCCTCGTTTGGAGATGCCAAAAATTAAGCAGGATCTGCCAAGTCCTCCAGCTGAAGAACTTCCGACGGATCTAAGCAGCAATAAACGAAGAACTTTGACACCACCAGCGCCACCTGGCGTCTTCTTCTGCAATCAATGCAACGCTGGGCTGCCAGACTTTGAAAGCTTTCGCAATCATTTGAAAACACACATTGCCGAGGGCATGCAATTGATTTGTCCCCACTGTGGCTTGAGTCTACCGGAACAAAGCGAATTTGAACGTCATGTTGTGGCACATTTTTTGATCACCGGCTCCGAGTTCAATTGTGGCGCCAATTGTGGCAAAGCCTTTGCCAAATCGGATGAGCTGCAGCAGCATTTGATCAGTGAACATGTTCAGACATTATTAAAGTGTTCCATCTGCTCGGAGCTGTGTGAGAATCGCATGTCCATGCAGCTCCACTTGGCCTGTGCTCATAGTCAGGAGACAAAACTGCTACGATGCAGTGCGTGCTTGGAACTCTTTCGCAATGATACGGATTTCCATGTGCACGTTAAGACGCGACATCAGTTGGTGGGTGGAGGAGGTGCTTCTGCTGGACAAGGAGGTGGACCACCGAATGCATCTCCAGCGAATCCGTTGCAGTGCATGTTTTGTCGCGCCGTTTGCGCCTCAGAATTGGAAATGCATTTCCATTTGGCGGCGCATGCCCGGCAATTCCGTTGTCCCAGTTGCCCCGAGACGTTCCATGTGGAGTTTCTACTCGATCGTCATATGCAGAGTCAGCATGGTGGTGTCAAGGATAAGCAGGAGCAGTCCGCAAATCAGATGGGCAGTCTGTATGTGAATGCTTTGTTGCCTCCATTGGCGGCTgccgctgcagctgctgcggctgccACAAATAATAACAGTAATCTGCATATCGATTACAATGTGGCATTTAAAGGACTTTTTGGTGGGGgaaatgccacgcccacaaatgCACAGGCAGCCAACAAGTTCTACAGTCCATTGCAGGTTGATACGAGTGCTTTGAAGCCACAACAAACCCCACATCCTGCACTCATGTACGGTCTCAGTCAACGTTATTTGATGGAGATGTATGCAGCAAAGGCAACTTCTCCAGCAGCCAGTGCACCCGAACTACCGGCACAAGCAACCCAAGCAGCGAATGCAACGGCGTCCAGTACTGGGAGCAGTTACAGCTGTGGCATGTGTGAGCGTCAGGATTTGCGCAGTGAGGCGGAACTACATTCACATCGGAAGCTAGCTCATAATCTGAAGACTGGAGTCAGTTTGCGATGTGCCTACTGTTCGGGCAATTATAAATCTCGTGCAGAACTGGAGCAGCACATGAAGAGCTGTCACAATTCGAGTGGCAAACACAAGTGTCTCATCTGTGACGAGATCTTTCCATCGCCAGCAATACTAGCCGAGCATAAGCTACAACATTCCAAGGTGGGTCAGTCGGGGAAATGTGCCCATTGTGGCCAGCAGTTGGAGCATGTGGCTGCGTTCCGTGCACATCTCGGCGAGCATGGTAATGATGGTAATTTACCCATGGCTTGCATTTGTTGTCGTCAAACTTTACACTCTGAATTTGAACTGAGTTTACATGCAAAGTTCCATACAAAATCTCCAAATTGCGGTAGTCTCCAGGAACCCGTTTGTGCTTTGTGCTTGGAACCCTTGCCGGAGGCGGGCGAAACTGCTAAATTGTGTGACAAATGCTGCCGCAAACATAATCTCCATGGTAAGCGAAGCAAGGAAGCGCCTCCTGTGGTAGCTCTTCAACAACCTACAGCAAACACAGTGGTTTATCTGGAGAATCGTTGTAATCTCTGCAAGCTTATATTGCCGCACGCTCAAAAGCTCCAGGAGCACCTGGTGGAGCATACGTTTGCCGGTACCGAACAGCGTGGGTTCAACTGTTACATTTGCTCAGCGGTATTTACGGCTCCGGGTGGTCTCCTGGCTCACATTGCAGAGCATGGTGCTCGACCTTACGATTGTAATTTGTGcccagaaaagttttttttccgTGCCGAGCTCGAGCATCATCAGCGTGCACATGAACTACGTCAAATCCCAGCACCGCCTAATCCTTCTCCTGCGGTACGTCCATTACCCAAACAGGAGAATCACAGCTCCTCGGCCAGCTCACCCATTCTCAGTCCCAGTCATGTGAAGCAGGAGCTTTATGAGTCAGAAACTGCAGCTTCACCACAACAACCAGAAGAGTCACCTGCTCAAGACGAAGAGGAGTACATTGAAGTCGAGCAGGTTCCGCATGAAACCCGCTCTAATGAACTGTTATCTGGTGGGCAGACCGAACGCTCCAGCAGCAGTGCCTGA
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYGTHTSSSYSPSISDGTLTPNSVQQPKSEEPQTEESKSKANGEGSAMEQQDLAKPKRPAHLHHHHHHYHHQQALKIANKLRKINKEAKLAAAAGAAAGHGGAGTGAAANKFDKLTGESIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPKRARAGVVPTTPTPTPQLRCSFCSPKVMEFSSLEQLNAHLQAAHEKQQQQGGRSSATITNTTETVEPPTNGFQLNCEYCTMKFVNIASLFQHMRTTHLDRLSSPNSYYEHFNRLATAGTFSPRLEMPKIKQDLPSPPAEELPTDLSSNKRRTLTPPAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLICPHCGLSLPEQSEFERHVVAHFLITGSEFNCGANCGKAFAKSDELQQHLISEHVQTLLKCSICSELCENRMSMQLHLACAHSQETKLLRCSACLELFRNDTDFHVHVKTRHQLVGGGGASAGQGGGPPNASPANPLQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGVKDKQEQSANQMGSLYVNALLPPLAAAAAAAAAATNNNSNLHIDYNVAFKGLFGGGNATPTNAQAANKFYSPLQVDTSALKPQQTPHPALMYGLSQRYLMEMYAAKATSPAASAPELPAQATQAANATASSTGSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLGEHGNDGNLPMACICCRQTLHSEFELSLHAKFHTKSPNCGSLQEPVCALCLEPLPEAGETAKLCDKCCRKHNLHGKRSKEAPPVVALQQPTANTVVYLENRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPGGLLAHIAEHGARPYDCNLCPEKFFFRAELEHHQRAHELRQIPAPPNPSPAVRPLPKQENHSSSASSPILSPSHVKQELYESETAASPQQPEESPAQDEEEYIEVEQVPHETRSNELLSGGQTERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00538445;
90% Identity: -
80% Identity: -