Spol011117.1
Basic Information
- Insect
- Scaptomyza polygonia
- Gene Symbol
- -
- Assembly
- GCA_035044585.1
- Location
- JAWNNU010001345.1:284757-286103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00025 0.027 15.5 1.8 1 23 157 180 157 180 0.98 2 9 0.001 0.11 13.6 0.2 1 23 187 210 187 210 0.96 3 9 0.022 2.4 9.4 2.1 1 23 217 242 217 242 0.95 4 9 1.7e-06 0.00018 22.3 1.5 1 23 252 275 252 275 0.98 5 9 0.0022 0.24 12.5 7.2 1 23 291 314 291 314 0.96 6 9 0.0002 0.022 15.8 1.7 1 23 324 346 324 346 0.97 7 9 8.3e-07 9e-05 23.3 0.8 2 23 352 374 351 374 0.95 8 9 2.4e-05 0.0026 18.7 3.4 1 23 380 402 380 402 0.95 9 9 1.4e-05 0.0015 19.5 2.5 1 23 408 430 408 430 0.98
Sequence Information
- Coding Sequence
- ATGCAAGCGTTGTATAGCAACCATTGCTTGACATGCCTGCACCAATTAGATAAACACAACGTCGACTCGACGCATATCATCGACAAAAAGCTACAGCATCTTCTAATAGAGTGTTTGGATTGGCAGCAAACAGAGCTTTCCGTGGAATGTTTACCCAACCGCCTATGTTGCCCCTGCTACGAGCTTTTGCGGCGTTTCGAGAAGTTTCAACACCAGGCACGCCTTTGCCGTCAGCAGCTACTGGACTTGCTAAATCAGGAGCAGGCCGAGCAGCCGCAATCTGCCGGTTTTGAGATTATCTATGAACGCGAATCAATGCCATCCCCAGAAGTCTTGCTGCTCGCTGTGGATGCCGAGGCCGAATCGATGGACGAACGCCCACCACCAGATCCGTTCGAAGAGGCGGTTAAGCACCCTAAGCAAGCAAAGACATCGCGCCCCAGTCTTTTGAAAGGTCGCAAAAACATCTTCAAGTGCTGGCAATGCGGCCATTCGTTTTCTCGAAGACTCACCATGGACGCCCATGTGCGTAAGGTGCACGAAGGCATCAAGCGTCCCTTCAAATGCGATCTTTGCGACAAGGCATACATTTTTATGGGCGGCCTCTACACACACATCAAGGAGATCCATGGCACTCAGGTGCGTTCACATCGCTGCGATCATCCCGAATGCGATCGTGTGTATGTCAGTCGCATTGCCATGCTTAAACACAAACGTCTTAAGCATAATCCGTCCGCTACACCAGCCTGCAAGTATGTGTGCGAGAAGTGCGGCGCCACCTTCAATCAGACAGCGAATCTCGCACATCATCGTCGCACCAAACACCCCACGCCAGCGGAGTCAGCAGCAATATCCCGCAATAGCAAgcaattttattgtgatatatgCCAAAAGCATTTCCATTCCCGTTACACCCTCAGATACCATCAAATGCAACAGCACACAGATGCCGCTAACGTGCAGGAACAGCACGAGTGCAAAGAGTGTGGCAAGCGCATGGCCAAGCGATTTATGCTCATGCGACACATGCTCGTCCACAGTAAAGAAAAGTTACCCTGCGAACATTGCGGTCGTCGCTTTACTCGCCGTTTCGAGCTCGAATCGCACATCCGTGCCGTCCATCTGAAGCTGAAGCCATTTCCCTGCACACATTGTGGCGAGACTTTTGCCACTCGCAAAACGTTGACACATCacgaatacatacataccgGAGAGAAGCCCTACGTTTGCGGCGTCTGTGGACAGACCTTTCGCCAGCAGACCTGCCTCAAGACTCACAGCAAAATTCATGGCGAAAAGTCTAAATGCAACCAAGGCGCAACGATAAACGATAAAAACAAgagctaa
- Protein Sequence
- MQALYSNHCLTCLHQLDKHNVDSTHIIDKKLQHLLIECLDWQQTELSVECLPNRLCCPCYELLRRFEKFQHQARLCRQQLLDLLNQEQAEQPQSAGFEIIYERESMPSPEVLLLAVDAEAESMDERPPPDPFEEAVKHPKQAKTSRPSLLKGRKNIFKCWQCGHSFSRRLTMDAHVRKVHEGIKRPFKCDLCDKAYIFMGGLYTHIKEIHGTQVRSHRCDHPECDRVYVSRIAMLKHKRLKHNPSATPACKYVCEKCGATFNQTANLAHHRRTKHPTPAESAAISRNSKQFYCDICQKHFHSRYTLRYHQMQQHTDAANVQEQHECKECGKRMAKRFMLMRHMLVHSKEKLPCEHCGRRFTRRFELESHIRAVHLKLKPFPCTHCGETFATRKTLTHHEYIHTGEKPYVCGVCGQTFRQQTCLKTHSKIHGEKSKCNQGATINDKNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01321371;
- 90% Identity
- -
- 80% Identity
- -