Spol007688.1
Basic Information
- Insect
- Scaptomyza polygonia
- Gene Symbol
- T
- Assembly
- GCA_035044585.1
- Location
- JAWNNU010000909.1:1486966-1493225[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00012 0.013 16.5 0.9 1 23 161 184 161 184 0.96 2 15 0.00035 0.038 15.0 3.6 2 19 191 208 190 211 0.93 3 15 0.0019 0.2 12.8 1.9 1 23 230 252 230 252 0.97 4 15 5.2e-05 0.0057 17.6 0.2 1 23 258 280 258 280 0.98 5 15 1.6e-05 0.0017 19.3 0.4 1 23 286 309 286 309 0.96 6 15 5.4e-05 0.0058 17.6 2.4 1 23 315 337 315 337 0.98 7 15 0.0003 0.033 15.2 0.1 1 23 343 365 343 365 0.96 8 15 0.00023 0.025 15.6 4.7 1 21 371 391 371 392 0.93 9 15 0.0062 0.67 11.1 0.1 1 23 963 986 963 986 0.96 10 15 0.00041 0.045 14.8 6.1 1 19 992 1010 992 1012 0.96 11 15 0.024 2.7 9.2 2.2 1 23 1032 1054 1032 1054 0.91 12 15 6.3e-05 0.0068 17.4 2.8 1 23 1060 1082 1060 1082 0.97 13 15 0.0044 0.48 11.6 4.7 1 23 1101 1123 1101 1123 0.98 14 15 0.14 16 6.8 0.4 1 21 1129 1149 1129 1150 0.90 15 15 0.0048 0.52 11.5 2.9 2 21 1160 1179 1159 1184 0.90
Sequence Information
- Coding Sequence
- ATGTCTGCCCAGTTAAGTGAACTGCTTTGCCGCGTTTGCTTAAGGCAAGACGATCTTCTGGTAGATATCTACGAACATGTAGACGAGCAGCAAACGGATCTATGCACACTACTCGAGCGCTGTGGCAACATTAAAGTCCAAAAAACTGATAACTACCCAAAGTACTTGTGTCAAGTGTGTACACAGGAGCTGCTTATCTCAGCAAAGTTTCGCGACAAGTGTGCTGCGACGGAACAAGCGCTAAAACAGCAACTAGAAGACGAAGAAGCTGCTATGGCTATTACTAATTTGGCTAGAGAGGAGCTAGTAATAATGACAGAAAATGTGGAAAGCAAGTTTAATACTGATGATTTGATAGAATTCGATCCCATTGAAGATGTTGAACCATGTGAGGCGAGCAACAAGTCAACAGAAAAAGAAGATCACAATGTTGGGCTGGATTTAATAGAGGTTCCCGAAGCCAAGCAATTTAAAACGGACTTCAAGTGTGACGAATGTGGCGCTGCCTTCTGCCAGACAACAATGCTGCAACAGCACATAGTAAAATTACACCCAACTGCAGATTGTAGCAAATGCGATGAGTGTGGTTATTGCTTTACCCAGCAGATAAATTTACAGCAGCACAACTGCAGTGGCTTAATGGAATCTGCTTTGCCTAAAGATGAACGGGGCCATCATCGTTGCGGTTACTGTTGCGTCTACTGTAGCAAGAGTCTGCAATCGTCAGCTAGCCTTGTCATGCATTTGCGTACGCACACCGGGGAGCGTCCATTTGTCTGCGACGTTTGCCCTAGGGCCTTCAAAACAAATGGTGGACTTTTACTCCACAAGAAGCGACACAAAGGGCTAATTTCATTCGAGTGCGAGTACTGTGGCAAGGGTTTTCTTGAGTCAAGTAATCTTAAGCGTCATATCATCTCGAAGCACACAAGGAATAAACCGCACACCTGCACAACCTGTCAGCGCTCCTTCGCCCGCGTCAATGAGCTCGAAGTGCACAGGCGAACCCACACAGGAGAACGTCCCTATGCTTGCACCATGTGTGATCGACGCTTTGCTCAGCAGGGCGTTTTACGCAGCCACGAACTCATCCATTCTGGCCAGCGGCGACATTGCTGCAACCTCTGCCAGAAGACTTTCAGTCGTTTAGGTCAGCTTAAAAAACATCAACTTAAATCCTGCATTTCCTTGGatacagaaaaacaaattgaattggTGCTGGAGTCACAATTGTTATTATCAAACAAAGTAAAAATAACACCAGGAACCCTTGATATTGTGATTGACCTAATGGAAAATGAAGATATGCCCGAAGTAGATAAGCTCTGCGTCTTGTGCTTCGATGAGATGAAGGTGGCTGCTGCCTTCGAATATGACAGCTCATCGGACGTTGTCTTTGAGCCAAGCAACTATGTCCAAGTGGCTATAGTACGTGGCTTAAAGAAATCGTGGAAGAAACCTGTATTCTTCGACTTCAATGCTGCTATGAACGTATTTACTCTTCACTCAATTTTGACAAAGCTCCACACGAAAGGTTTTCCAGTAGTAGCTATTGTGTCAGATTTGGGCCCTGGAAATCAAAGCTTGTGGAGACAGCTTGGCATATCAGAGACAAAGACCTGGTTTAGCCATCCGGCGGATGCGCatttaaaagtatttgttttttccgACACTCCACACCTGGTAAAGTTAATCCGTAATCACTTTATCGGCTCCGGATTAAACATCAATGGGAAAAAGTTGACAAAGACGACAATCCAGCAGACAATTCGGTACTGTGCTCAGCCCGACGTGTCGATACTTTTTAAGATTAACGACAGTCATATTAATGTTGAGTCGCTGgctaaacaaaaagttaaattggCAAAGGAACTTTTCTCCCATACAACCGCCAGTTCTATTCGACGTTGCTATGCGTTGGGCAATATAATAGAGAACCCGTGTGAAACAGCAGATTTCTTTAATCTTGTAAACGATTGGTTCGATGTGTTCAACACAAAGCTGTCAACAGCGAATTCCATCGAAACGACGCAGCCTTACGGAAAGCAGCTAAAAATCCAGCAAGGCATTTTGGCTGAAATGTCAAAGATTATGGATAATACGAATATTGTTGGCAATCACATTCTTGAGAACTTTTTTGGAGCCATGCGGTCGAGAGGTGGCCAGTACGACCATCCGACTCCACTGCAGTTTAAGTATAGactaagaaaatatataatagCTAAGAATACAGAATTGTTGAATGGCAAGCAAGACGATTCTGATGAGTGGTTAAATCTAGATTTTTCTCAAGCCGTCCAAAATATGGACAACAAAGAGAACGAGCATGAGGATTTCAATCTCCAATTTGATTATGATGACAGCATACCAGCAGACATAGACGAGTTGACGGAGGATGCGCTCGAATACCTGGCTGCACATTCATCTGAACTACTCTGCCGCATTTGTCTTAAAAAAGACGATCTCCTGGTTAACATTTTTAAGCCGGTGAAAGCGCTGCAATCGGATCTATGTACACTACTCCAGCGTTGCGGCAACATAAAAGTCAAAATAACTGATTCATACTCAAAGTACTTGTGTCAAGAGTGTACCGAGGAGCTGCTTATCTCGGCAAAGTTCCGCAACAAGTGCGATGCAACCGAACAAGCGGTAAAAGAGCGTTGTTTGCAACGCTTAGTGGAAGATGAAGCTGCTTTAGCTATAACTGATTTAAACAGCTGTAATACCGATGACTTAATAGAATTCGATCCCATTGGAAATGTTGACGAATGCGAGGAGACCGAAACGACTGTTCAAGAAGATGAAAGTGAAGGGACaatagaaaatgaaaatgatgaGAATGAGGATAATGAGGAGAATTCAGAAGATGAACAATTAGATGCGGATTACACGTGTGATGAATGCGGCGCTGGCTTCCAACGGACAATACGGCTAAAAATGCACATTGCAAAACTACACCCAACTGCGGAGTGTTACAAATGTGACGAATGTGGTTATTGCTTTACCAAgcagaaaaatttaaaagaacaCAACTGCGATGGGCCAAAGAactttgatttgctttttggTGGAAGAAAGCGTCATCGATGTGTCTACTGTTGCGTATACTGTGGACAATGTCTAAAATCCGCGACTAGCCTTCTCGAGCATATACCCACGCACACAAGAGAGGCTCCCTATGACTGCACCATTTGCCAAAGGACTTTCACAACGCATGCGTACCTTATTAATCATGAGAAGCGACACAAGAAATCCAGTCAACAAAAGCGACCACCGGTAAAGAAAGTTATCGTTAAGCCGCATACTTGCAACATCTGTCAGCGCTCCTTCAGTATGCTCTGCATCCTTCAAAACCACATTCGAACGCACACAGGCGAACGTCCATTTGCTTGCGCAAAATGCGATCGCCGCTTTATGTCGAAGCTTGTTCTAAAGGATCACGAGAAAAGGCGTTGTAGCAAACCAGAACAGTTTTGGACTTGCGAACCCTGTCAAAAAACTTTCAATCGTCAAAGCCATTTTACACAGCACACGCTTAGATCCAAAACCCATAAACTTAATACAGAAATGGATATAGAGTCCTAA
- Protein Sequence
- MSAQLSELLCRVCLRQDDLLVDIYEHVDEQQTDLCTLLERCGNIKVQKTDNYPKYLCQVCTQELLISAKFRDKCAATEQALKQQLEDEEAAMAITNLAREELVIMTENVESKFNTDDLIEFDPIEDVEPCEASNKSTEKEDHNVGLDLIEVPEAKQFKTDFKCDECGAAFCQTTMLQQHIVKLHPTADCSKCDECGYCFTQQINLQQHNCSGLMESALPKDERGHHRCGYCCVYCSKSLQSSASLVMHLRTHTGERPFVCDVCPRAFKTNGGLLLHKKRHKGLISFECEYCGKGFLESSNLKRHIISKHTRNKPHTCTTCQRSFARVNELEVHRRTHTGERPYACTMCDRRFAQQGVLRSHELIHSGQRRHCCNLCQKTFSRLGQLKKHQLKSCISLDTEKQIELVLESQLLLSNKVKITPGTLDIVIDLMENEDMPEVDKLCVLCFDEMKVAAAFEYDSSSDVVFEPSNYVQVAIVRGLKKSWKKPVFFDFNAAMNVFTLHSILTKLHTKGFPVVAIVSDLGPGNQSLWRQLGISETKTWFSHPADAHLKVFVFSDTPHLVKLIRNHFIGSGLNINGKKLTKTTIQQTIRYCAQPDVSILFKINDSHINVESLAKQKVKLAKELFSHTTASSIRRCYALGNIIENPCETADFFNLVNDWFDVFNTKLSTANSIETTQPYGKQLKIQQGILAEMSKIMDNTNIVGNHILENFFGAMRSRGGQYDHPTPLQFKYRLRKYIIAKNTELLNGKQDDSDEWLNLDFSQAVQNMDNKENEHEDFNLQFDYDDSIPADIDELTEDALEYLAAHSSELLCRICLKKDDLLVNIFKPVKALQSDLCTLLQRCGNIKVKITDSYSKYLCQECTEELLISAKFRNKCDATEQAVKERCLQRLVEDEAALAITDLNSCNTDDLIEFDPIGNVDECEETETTVQEDESEGTIENENDENEDNEENSEDEQLDADYTCDECGAGFQRTIRLKMHIAKLHPTAECYKCDECGYCFTKQKNLKEHNCDGPKNFDLLFGGRKRHRCVYCCVYCGQCLKSATSLLEHIPTHTREAPYDCTICQRTFTTHAYLINHEKRHKKSSQQKRPPVKKVIVKPHTCNICQRSFSMLCILQNHIRTHTGERPFACAKCDRRFMSKLVLKDHEKRRCSKPEQFWTCEPCQKTFNRQSHFTQHTLRSKTHKLNTEMDIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -