Spar010298.1
Basic Information
- Insect
- Scaptomyza parva
- Gene Symbol
- -
- Assembly
- GCA_035044645.1
- Location
- JAWNNT010000127.1:2273276-2303507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.9 5.9e+02 1.2 0.3 2 21 1207 1228 1206 1231 0.63 2 9 0.0043 0.29 11.6 0.7 1 23 1237 1260 1237 1260 0.96 3 9 0.16 11 6.7 0.9 1 23 1265 1288 1265 1288 0.92 4 9 0.00021 0.014 15.8 0.6 3 23 1533 1554 1531 1554 0.93 5 9 0.083 5.5 7.6 0.7 2 23 1563 1584 1562 1584 0.96 6 9 0.18 12 6.5 0.4 1 23 1591 1614 1591 1614 0.96 7 9 1.8e-05 0.0012 19.1 1.4 1 23 1620 1642 1620 1642 0.97 8 9 0.00017 0.011 16.1 0.2 1 23 1647 1669 1647 1669 0.98 9 9 0.00029 0.019 15.3 6.6 1 23 1675 1697 1675 1697 0.99
Sequence Information
- Coding Sequence
- atgagtgCCAACAAGCGACGACGTagttacagcaacaacagcacagcTGATCAAATGGATGCACCAAGGGATATGCAAGGTGGTGCAGAggcattgccaacaacaattgatgTGCAGCACTTGTGTCGTTGTTGTGGCAAAGGCGACTTGGACCTGCTCAAACTGTTCGAAGAGAGCGCTGTCGCTGGCAGTCAAACGGCACAGGTGCCAATGCAGCCTGCGTTATATCGCCGACGCAAAACAACACTTACAACTggaccagcaacaacaacggcacaacaacagcagcagcagctgccgcagcAACAGCGTAAAATTGTTAATCCTGTTGAGTATGCGCTTAGTGGAGCACACAGCAGCATGGACATTGTGTTGGAGGAAATGATCGTTTGGACACTGAATATCTCACGTGACGATGGTTTGCCCCAAGAGATTTGCCGTCAGTGCAAGGCCCAGTTCATAATGGTTGCCAAATTCCGACGACGTTGTGTGCGAGTACAGCAGCGAATGCACGAAGAGCTCCTAGCCAAAGTCGATCGCAAGTTAAAGAAAGAGGAGCTGAACACAAATGCAACACCTGCAGATGATTATATACATCTGCCGGAGACACAAATGGAGCGCAAACGTCGCCTGGTGGTGCCGTCAAACACAGATTCCGAAGAGGTGCTGCCACCAAAGCAAGCCAAAACCGAAACCCCACAACTACCGGTGGTGACACCGTCCAAGTCACGACGTGTGCGTCTAGCCTCTTTGCCCGCTTGCATTTCTGAGACtgaaacgacgacgacgacgacgacggacGCAATACCAGCAGAGACGACAACAAGCGATTGTCGCGTTAGTGGTGAAGTCAAAGAGCGTGCATCACAAAGATCAGCATCGCCATGGAGAACGAAAGCGGCACGCAAACAACTCTCCGTGACGTGTTCCACTAGCTCAACAGCATCCTCCTGTTCGCGAGATGACAGCATAACGCCAGAACTCGAGACGCCGGTAAAAGAAGCTAATTCGGCAACAGAAACATCCGGCGGTCAAACATCACCGGAACAGTTGAGTGATTTATCTGTGGCTCCATGTCTTGGCTTTGACAACgactgtggcagcaacagcagcagcaccaccaccacctcatCCAGTCCTACAACAACAGCGGGGTGCCAGCCAAccactaaaaatattaaactcaGATTCCCACCAAAACGCAGCACGCACAGCAAATCTCGCCTCTTGCGTGCTCGCAGATTGAAGCGTATgatcaaaaagaagaagagcaagGAAGGCCAAGCTCAAGATGAACAAAGGATAAACAGTGAACTTAATGAGAAAACgaaatcaattgaaaacatGCCAAATAGCTGTTCCGATGAGGAACCAAAtaccaccagcaccaacaccagcagcagcagtaccaTTAGTTcatgcaacaccaacaccagcaccagcacaagcagtagcagtagcagtagttCATGCAACACCAGCACGACCTCAAGTCCACACTCGAGCATAGAGAATCAAACTAATAACAAACAGGACGATGAggagggggaggaggaggCGAATGATCTCTCAAAATCAGATTCAAGTGAAATGATGCAGGTTGAACAAGAAAACAATGAAGAGCAGCTAGAATCTGTGGAAGTTAAACCAATGCCAGCAACTGATGACAACGCGTCAACAATAGAAATCAAAAGCATATCAGAGAATCCGATTGAAACCCAGTCTGTAGGTCCTGTACAGCTTGAGGAACTAAGCTCATCCAATACAGATCACGAACACCTTGAGAACAGACAGCAATCTGTGACGCCTGAAGTGCCAGCCGTTGAATGCGAAGTGGAAGTGGCTCTGACGACCGAGGTGGGGGGGCAGTCATCAGAGCTAATTGTAAGCATACCGCTAGATGCGCTCGGCGAAGATCTGCAGCGTAAACTATGCAGCGATGCCGAGTTAGAGagggaggtggaggtggaggaggCAGCCGCCGAGGAGGCACTAAGCGATGAGTTTGAGCAAAGAGATGGCGAGTCCAAGGAAACTATCGAATCCGACGATGTGAATAACAATGAGAATGCCGAGAATTTTTGCCAGAGTGCTACAGCAGATAGCTTCAATGCTGCTGTAGCACTCGCAACCAAAGATATTGAAGCTGAGCCAaatggaggaggaggagatgGGGGCGACGGAGACcacggtggcggtggcgggtGCAACGATGATGATATGGAATCATTAGAGAAATTAGCTAATCTACAACAGgtgaaggaggaggaggaggaggagcaacagccacagccacaaatTGCCACAACTGGCAGAGTCATGGATTTCCTAGCTGAATTCGAGAAGCATTGTGAAAAATCACTCAAGTCCCAGCAGACAGTTGGCCAGGCTGAGTTGGCGGTGGCCAATCAGCAGCTGGAAGTGGAAATGAACGACAGAGAGAATACGCTGCATGGCATACTGAATGAGATGCAGGATGAGCATCTCTACACGCCCGTCTGTACGCCCATCGATGAGTTCCTAACGCCGGCCGATTATGCACCGCCAACGCCAGCATCGCCCTGCTTCTATGAGCCACCAGTGGAGATACAAGCACCCTTGCTGCAGCAGGTCAACCAACAgccactgcagcagcagcagctactgcAGCAGAAGGATGGCAATCTCTTTGATGGCAACAATTTTAGTAATGAGCTGATTGGCTTCCAAAACGATATGCCCTGTTTTGAGAACATTGAAACAACGCCGGAGTCATTAAATGTGCAGCAGAGTCTCCAGCTGGAGCTTAATCAGTTCCTCAATGAGTTGCAGCcagcacaacagcagcagcaaccactacatcaacagcagcagcagcagcaattgcaacagttgcaactgcaacaggaAACTGTCAACTATGAGCCAATgtatcaaacaacaacacttccTGTTGCTCCAAACCACAACAGTAAAGTGCAGATTATACAAATGACGCCACAAGAGACACTTTGGCATgcacaacagctgcagcagcaacagcaacaacaacaacagcagcagcaccaacagacaacaacacatCTGCAATGGTCGACTGTTGGCGGTCTGGAAGCGATCAAGACTACGCCCAGTCTGGATAACctagacagcaacagcagtagcaacaataCCACCTACTACATCAATGCCACTGATCTCTATcaaacacagcagcagcagcagcatcagcagccacaacagcaacaacagacgACGACTGACACATATGCACTGCTCGATAGCAATGACAACTATGTgctggagcaacagcagcagcagcaacaaccgcaacatcagcagcagcagcaacaacaacaaccaattaTGATATTAATACAGCAACCAGAGTTGCAACAACCGGTGGCATCAGCCAGTAATCCACAGCAGGCGCCATTGCATATTAGCTATACCAATGAGTTGCAGACttatcaacagcagcacaaccagcaccagcagcaacaacaactttcacaaccacaacaacaacagcaacaacaacagcagcagcaacagcaacaacaagtacaaaaTACAGTATTAGGCTTAAGCAATCTAGAGATGATGCTGCCGCGTCAACGCGGTCGTCCGCCCATGTTAAAGTGCCGCTACTGCCAGAAGGGACCGCGTTTCTCTAGCAATCTGGAGTACAGTAATCACATCATTGAGCTGCATCCCGCCGTTGCACCATTCACCTGCCCGCATTGTCCCCTCGCCTTTGCGGGTCGCAGCAAGCGCAACCAGCACATTCTCAATAGCCACATGGTGCAAAAGTTTCAGTGTGGCCAATGCTCGCAAATGTTTCCCTCGCAACGTGCGCTCGATTTTCATTTGCAACGTTTTCACATGCCACTCGTCACGGAGCCGACAGCTTCAAGtgttccaacaacaaccacaacaacatcagcgccagtaccaccagcagcagcagcagcagcttcagtATCAACAGCTGGCGTGCGTCTAGAAGAGGTGCAACTGCGAATTGCAAGCAGCAACgatcaacagcagcatcagccgcCGCACAATCATCATCAACGGCAACAGGCAGCTTCTCATAATATGCCGGTTTTGGACTCACAATCAAGTCAAACCCAAAACCGGCCACGCAGAACGCGCATACTCTGCTGCCCAGACTGTGAGGACTGTTCAACATCCGGTGGAGGACACAGCCatggcggtggtggcggcagcggcggcggcagtgTTAAGTCATACGAGGAGCTCAATACGTTGCAACCACCACCGACATCGTTGACACCGCCCTCGACAATTGCATCGATGCCTTCGCCACAGCCCGCACCACATATAACGTTGCCGTCGCCGGAGCAATCGGAGCCCGACTCGACAACGGCAACGTTACGTCAGTTTCGTAAAcgttgcacaacaacaaacacaacaacaatgtcatcaacggcagcagcagcagccggatTCGGATCGGGAGCAACACCCACAACATCAGTACTAACAACTGTCTCGCTATCACCCtcgtcatcgccatcgtcgtcgACCATGATCGAGACGACAAGCAGCGCCACACAACTGCAGCTGGGCAAACTGCATGGCAGTCACCTGTGTGTGATATGTGATAAGAGTTTCACCAACATCATTGCGCTGCGCAAGCATCAGCAGTTGGCCCACGATTCGCAGACAACTATGCCGTGGGTCTGTTCGGTGTGCAAGCGCGGCTATAGGAAACGCATCGACCGGGATAACCATATGAAATCGCACGAGGAAAAGGGTCGACCGTATCAGTGCAATGAGTGTTTGGTGCGCTTTCCCGAGTTCAATCAATTGGCCATGCACAAATTCACCGTGCACGAACTGATTAAGCCGCATACATGCGATGAGTGTGGTAAACAATTTGGTACGGAGAGCGCCTTGAAGACGCACATTAAATTTCATGGTGTGGGCGGTTTCGAGTGCGAAGAATGCGATGTGGCATTCGCCTATATCAAAGATTTGCGCAAACATCGGCGCGCCCACAACTGTGACCTATTTTACAAATGTGATCATTGTCCCCGcacatttcaacattttacgAGCTATCGTGCACATATGAACACCCACCTGCCGCTGGGCGTATTTCTCAATGACAAGATGCCCAGCAGTGTATGCATCAAAACCGAAAATCTAACAAACACTGACGAATCGCTGATGCCCTTAACACCGCTAAGCAATTGCAATGGTAACAGTAGCACCAACAGTGGCTTGGATGATTGTCCTGGCTCTGTGGAAATGGTTGTGGAGAGCAGTATGTCAGCACCATCGCTGGAGATGATCGTGGATACGCCATAA
- Protein Sequence
- MSANKRRRSYSNNSTADQMDAPRDMQGGAEALPTTIDVQHLCRCCGKGDLDLLKLFEESAVAGSQTAQVPMQPALYRRRKTTLTTGPATTTAQQQQQQLPQQQRKIVNPVEYALSGAHSSMDIVLEEMIVWTLNISRDDGLPQEICRQCKAQFIMVAKFRRRCVRVQQRMHEELLAKVDRKLKKEELNTNATPADDYIHLPETQMERKRRLVVPSNTDSEEVLPPKQAKTETPQLPVVTPSKSRRVRLASLPACISETETTTTTTTDAIPAETTTSDCRVSGEVKERASQRSASPWRTKAARKQLSVTCSTSSTASSCSRDDSITPELETPVKEANSATETSGGQTSPEQLSDLSVAPCLGFDNDCGSNSSSTTTTSSSPTTTAGCQPTTKNIKLRFPPKRSTHSKSRLLRARRLKRMIKKKKSKEGQAQDEQRINSELNEKTKSIENMPNSCSDEEPNTTSTNTSSSSTISSCNTNTSTSTSSSSSSSSCNTSTTSSPHSSIENQTNNKQDDEEGEEEANDLSKSDSSEMMQVEQENNEEQLESVEVKPMPATDDNASTIEIKSISENPIETQSVGPVQLEELSSSNTDHEHLENRQQSVTPEVPAVECEVEVALTTEVGGQSSELIVSIPLDALGEDLQRKLCSDAELEREVEVEEAAAEEALSDEFEQRDGESKETIESDDVNNNENAENFCQSATADSFNAAVALATKDIEAEPNGGGGDGGDGDHGGGGGCNDDDMESLEKLANLQQVKEEEEEEQQPQPQIATTGRVMDFLAEFEKHCEKSLKSQQTVGQAELAVANQQLEVEMNDRENTLHGILNEMQDEHLYTPVCTPIDEFLTPADYAPPTPASPCFYEPPVEIQAPLLQQVNQQPLQQQQLLQQKDGNLFDGNNFSNELIGFQNDMPCFENIETTPESLNVQQSLQLELNQFLNELQPAQQQQQPLHQQQQQQQLQQLQLQQETVNYEPMYQTTTLPVAPNHNSKVQIIQMTPQETLWHAQQLQQQQQQQQQQQHQQTTTHLQWSTVGGLEAIKTTPSLDNLDSNSSSNNTTYYINATDLYQTQQQQQHQQPQQQQQTTTDTYALLDSNDNYVLEQQQQQQQPQHQQQQQQQQPIMILIQQPELQQPVASASNPQQAPLHISYTNELQTYQQQHNQHQQQQQLSQPQQQQQQQQQQQQQQQVQNTVLGLSNLEMMLPRQRGRPPMLKCRYCQKGPRFSSNLEYSNHIIELHPAVAPFTCPHCPLAFAGRSKRNQHILNSHMVQKFQCGQCSQMFPSQRALDFHLQRFHMPLVTEPTASSVPTTTTTTSAPVPPAAAAAASVSTAGVRLEEVQLRIASSNDQQQHQPPHNHHQRQQAASHNMPVLDSQSSQTQNRPRRTRILCCPDCEDCSTSGGGHSHGGGGGSGGGSVKSYEELNTLQPPPTSLTPPSTIASMPSPQPAPHITLPSPEQSEPDSTTATLRQFRKRCTTTNTTTMSSTAAAAAGFGSGATPTTSVLTTVSLSPSSSPSSSTMIETTSSATQLQLGKLHGSHLCVICDKSFTNIIALRKHQQLAHDSQTTMPWVCSVCKRGYRKRIDRDNHMKSHEEKGRPYQCNECLVRFPEFNQLAMHKFTVHELIKPHTCDECGKQFGTESALKTHIKFHGVGGFECEECDVAFAYIKDLRKHRRAHNCDLFYKCDHCPRTFQHFTSYRAHMNTHLPLGVFLNDKMPSSVCIKTENLTNTDESLMPLTPLSNCNGNSSTNSGLDDCPGSVEMVVESSMSAPSLEMIVDTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -