Basic Information

Insect: Scaptomyza parva
Gene Symbol: L
Assembly: GCA_035044645.1
Location: JAWNNT010000090.1:3042387-3050142[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1e-05 0.00068 19.9 2.9 1 23 162 184 162 184 0.98

2 18 0.35 23 5.6 6.2 1 23 190 212 190 212 0.97

3 18 1.7e-07 1.1e-05 25.5 3.2 1 23 218 240 218 240 0.99

4 18 1.2e-05 0.00083 19.6 0.4 1 23 246 268 246 268 0.99

5 18 0.31 20 5.8 0.1 2 23 342 367 341 367 0.92

6 18 0.014 0.91 10.1 0.5 2 23 399 421 398 421 0.96

7 18 0.027 1.8 9.1 0.7 1 23 486 508 486 508 0.97

8 18 0.0052 0.34 11.4 0.1 2 23 516 537 515 537 0.91

9 18 0.00013 0.0088 16.4 0.1 1 23 545 569 545 569 0.93

10 18 4.5 3e+02 2.1 0.3 2 20 575 593 574 594 0.91

11 18 5.1 3.4e+02 2.0 1.6 2 23 605 627 604 627 0.95

12 18 0.0025 0.17 12.4 1.1 1 23 676 699 676 699 0.97

13 18 0.0064 0.43 11.1 1.6 2 23 870 892 869 892 0.96

14 18 0.11 7.6 7.2 0.1 1 23 898 920 898 920 0.92

15 18 0.55 37 5.0 0.4 2 23 928 949 927 949 0.93

16 18 0.97 65 4.2 0.5 2 23 1045 1066 1045 1066 0.94

17 18 0.048 3.2 8.3 0.0 1 23 1076 1098 1076 1098 0.94

18 18 0.00022 0.015 15.7 1.2 1 23 1103 1125 1103 1125 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1e-05	0.00068	19.9	2.9	1	23	162	184	162	184	0.98
2	18	0.35	23	5.6	6.2	1	23	190	212	190	212	0.97
3	18	1.7e-07	1.1e-05	25.5	3.2	1	23	218	240	218	240	0.99
4	18	1.2e-05	0.00083	19.6	0.4	1	23	246	268	246	268	0.99
5	18	0.31	20	5.8	0.1	2	23	342	367	341	367	0.92
6	18	0.014	0.91	10.1	0.5	2	23	399	421	398	421	0.96
7	18	0.027	1.8	9.1	0.7	1	23	486	508	486	508	0.97
8	18	0.0052	0.34	11.4	0.1	2	23	516	537	515	537	0.91
9	18	0.00013	0.0088	16.4	0.1	1	23	545	569	545	569	0.93
10	18	4.5	3e+02	2.1	0.3	2	20	575	593	574	594	0.91
11	18	5.1	3.4e+02	2.0	1.6	2	23	605	627	604	627	0.95
12	18	0.0025	0.17	12.4	1.1	1	23	676	699	676	699	0.97
13	18	0.0064	0.43	11.1	1.6	2	23	870	892	869	892	0.96
14	18	0.11	7.6	7.2	0.1	1	23	898	920	898	920	0.92
15	18	0.55	37	5.0	0.4	2	23	928	949	927	949	0.93
16	18	0.97	65	4.2	0.5	2	23	1045	1066	1045	1066	0.94
17	18	0.048	3.2	8.3	0.0	1	23	1076	1098	1076	1098	0.94
18	18	0.00022	0.015	15.7	1.2	1	23	1103	1125	1103	1125	0.97

Sequence Information

Coding Sequence: ATGATGGCCTTAAAGATGTTATATCGTGGTCCCAGTTCACGTTTGGagaatttaattgaaaagatTCAAGCCACCAAGGAGATAACAAATAACGATATGTACAGCACGCACACCTCCTCGAGCTATTCGCCAAGTATCTCGGATGGCACACTGACACCTAACTCGgtacagcaacaaccaaagtCCGACGAACCTCAAACCGAGGAGTCCAAGGCAAATGGTGAAGGTTCGGTTGCGGAACACCAGGACCTGCCCAAACCAAAGCGACCCGCTCATTtgcatcatcaccatcatcattatcatcatcagcaggCGCTGAAAATTGCCAACAAGCTGCGAAAAATCAATAAGGAAGCcaagttggcagcagcagccgcagcaggaGCCGGAACAGGACATGGAGGTGCAGGTACCGGAGGAGCAAACGCCAACAAGTTTGATAAGTTGACAGGCGAAGGCATTAAAAGTCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGCTACTTGAAACACCACGTGCAGAGCCATGCCGAACATTTGCCTTTTAAATGCGAATACTGCGCCAAACTATTCAAGCATAAGCGTTCCCGAGATCGTCATAAGAAACTGCATACGAACGAGAGGAACTACAAGTGTCCGCATTGTGAGGCTGCTTTCTCAAGAAGCGATCATTTAAAGATTCATATGAAGACGCACGATATACAGAAGCCCTTTCAGTGCAGCATGTGCAACCGTGGATATAATACAGCTGCCGCTTTAACCTCCCACATGCAGAAGCACAAGAAGAATGCTGCAATCCTCGCAGCTGGCGGTAATCCCAATGCCCTGAACTATAGTCCACGTTCCACAGGGTCCGCCTCAATCTCTAGTAATGGTAGTCTCAACAAGCGTCGCTATGCCCTGGCACTTGCTTCGGATAGCAGTCCAAGTCGTCTAGAATTCCCCAAACGGGCACGAGGTGGAGCAGTTCCAATCACACCGACACCAACGCCCCTGCTTAGATGCAGTTACTGCAGTCCCAAAGTAATGGAATTTAGCAGTGTGGACCAGTTGAATGCACATCTTCAAGCGGCACacgaacaacagcagcaaccacaggGAGGAAGAAGCTCTACAACTATTACGAACAACACGGAGCAAGTGGAACCCTCCACAAATGGTTTTCAACTCAATTGCGAATATTGCACTATGAAATTTCTGAATATTGCCGCACTCTTTCAACATATGCGTACGACACATTTGGATCGTTTGAGTAGTCCCAACTCCTACTATGAACACTTCAATCGTCTGGCAACGGCGGGTACATTTAGTCCTCGTTTGGAGATGCCTAAAATCAAACAGGATTTGCCAAGTCCACCGCCAGAAGAACTACCAACGGATTTAAGCAGCAATAAGCGAAGAACTTTAACGCCCCCGGCGCCACCTGGCGTCTTCTTTTGCAATCAATGCAATGCCGGGTTGCCAGACTTTGAAAGCTTTCGCAATCATTTGAAAACACACATTGCCGAGGGCATGCAGCTGATCTGTCCCCATTGCGGCCTGAGTCTACCGGAACAAAGTGAATTCGAACGTCATGTTGTGGCACATTTTTTAATCACCAGCTCCGAGTTCAATTGTGGTGCCAGTTGTGGCAAATCCTTTGCCAAATCAGACGAACTGCAACAGCATTTAATCAGTGACCATGTTCAGACCCTGTTAAAGTGTTCCATCTGCTCGGAATTGTGTGAGAATCGGATGTCCATGCAGCTTCATTTGGCCTGTGCTCACAGTCAGGAGACAAAGTTGCTTCGATGCAGTGCGTGCTTGGAACTCTTTCGCAATGATACCGATTTCCATGTTCATGTAAAGACGCGACATCAGTTGGTGGGAGGAAGTGCTTCCGCCGGACCGGGTGGACCACCCACAGCTCCTCCTTCGAATCCTTTGCAGTGCATGTTTTGTCGCGCCGTTTGTGCTTCAGAGCTGGAGATGCATTTCCATTTGGCGGCCCATGCTCGACAATTCCGTTGTCCCAGTTGCCCGGAGACATTCCATGTGGAATTCCTGCTCGATCGTCATATGCAGAGTCAACATGGTGGTGTCAAGGATAAACAGGAACAGGCCACAAATCCCATGGGTAGTCTATATGTGAATGCTTTGTTGCCTCCTCTGGCGGCcgccgctgcagctgctgctgctgccacaaatAATAACAGTAATCTGCATATCGATTATAATGTGGCATTCAAAGGACTCTTCGGTGGAGGAAATACCACACCCAACAATGCACAGCCAGCGAACAAGTTCTACAGTCCACTGCAGGTCGATACCAGTGCGTTGAAACCACAACAAACCCCTCATCCTGCACTTATGTACGGTCTTAGTCAACGTTATTTGATGGAGATGTATGCAGCTAAAGCAACTTCTCCAGCAGCCAGTGCACCCGAACTACCGGCACAGGCAACCCAAGCAGCAAATACAACGGCATCGAGTACCGGCAGCAGTTACAGTTGTGGCATGTGTGAGCGACAGGATTTGCGTAGCGAAGCGGAACTTCATTCCCATCGAAAACTAGCTCATAATCTCAAGACGGGAGTCAGCTTGAGATGTGCCTACTGCTCGGGCAACTATAAATCTCGAGCGGAGCTGGAACAACACATGAAGAGCTGTCACAATTCGAGCGGGAAACACAAATGTCTCATTTGTGATGAGATCTTTCCATCGCCAGCAATACTTGCCGAGCATAAACTGCAACATTCCAAGGTGCGTCAGTCAGGGAAGTGTGCCCATTGTGGTCAGCAGTTGGAGCATGTGGCTGCATTCCGTGCACATCTCGGAGAGCATGGTAATGATGGTAATTTACCCATGGCATGCATTTGCTGCCGTCAAACCTTACACTCTGAATTTGAGCTGAGTTTACATGCAAAGTTCCACACAAAGTCTCCAAATTGTGGTAGTCTACAGGAACCCGTTTGTGCTCTGTGCTTGGAACCCTTGCCGGAAGCGGGAGAAACTGCTAAACTGTGTGACAAATGTTGTCGTAAGCATAATCTCAATGGTAAGAGGAATAAGGAAGCACCTTCTGTGGTACCTCCTCAACAACCATCAGCAGTGGCTTATCTGGAGAACCGTTGTAATCTATGCAAGCTCATATTGCCACATGCTCAAAAACTTCAGGAGCACCTCGTGGAACATACTTTTGCCGGTACCGAACAGCGCGGTTTCAATTGCTACATTTGCTCAGCGGTATTTACGGCACCCGGTGGCCTCCTCGCTCATATTGGCGAGCATGGTGCTCGACCCTACGATTGTAATTTGTGCCCCGAGAAGTTTTATTTCCGTGCCGAACTCGAGCATCATCAGCGTGCTCATGAACTACGTCAAATCCCAGCACCCAACAATCCACCTCCTACGGTACGTCCTCCACCCAAACAGGAACACCACAGCTCCTCGGCCAGTTCACCCATTCTCAGTCCCAGTCATGTGAAGCAGGAGCTTTATGAGTCTGAAACTGCAGCCTCACCACAACAGCCAGAAGAGTCACCTGCCCAGGACGACGAGGAGTACATTGAAGTCGAGCAGGTACCACATGAAACCCGCTCCCATGAACTGTTATCCGGTGGACACCCCGAACGCTCTAGCAGTAGTGCCTGA
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSVQQQPKSDEPQTEESKANGEGSVAEHQDLPKPKRPAHLHHHHHHYHHQQALKIANKLRKINKEAKLAAAAAAGAGTGHGGAGTGGANANKFDKLTGEGIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLNKRRYALALASDSSPSRLEFPKRARGGAVPITPTPTPLLRCSYCSPKVMEFSSVDQLNAHLQAAHEQQQQPQGGRSSTTITNNTEQVEPSTNGFQLNCEYCTMKFLNIAALFQHMRTTHLDRLSSPNSYYEHFNRLATAGTFSPRLEMPKIKQDLPSPPPEELPTDLSSNKRRTLTPPAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLICPHCGLSLPEQSEFERHVVAHFLITSSEFNCGASCGKSFAKSDELQQHLISDHVQTLLKCSICSELCENRMSMQLHLACAHSQETKLLRCSACLELFRNDTDFHVHVKTRHQLVGGSASAGPGGPPTAPPSNPLQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGVKDKQEQATNPMGSLYVNALLPPLAAAAAAAAAATNNNSNLHIDYNVAFKGLFGGGNTTPNNAQPANKFYSPLQVDTSALKPQQTPHPALMYGLSQRYLMEMYAAKATSPAASAPELPAQATQAANTTASSTGSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVRQSGKCAHCGQQLEHVAAFRAHLGEHGNDGNLPMACICCRQTLHSEFELSLHAKFHTKSPNCGSLQEPVCALCLEPLPEAGETAKLCDKCCRKHNLNGKRNKEAPSVVPPQQPSAVAYLENRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPGGLLAHIGEHGARPYDCNLCPEKFYFRAELEHHQRAHELRQIPAPNNPPPTVRPPPKQEHHSSSASSPILSPSHVKQELYESETAASPQQPEESPAQDDEEYIEVEQVPHETRSHELLSGGHPERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00538445;
90% Identity: -
80% Identity: -