Basic Information

Insect: Scaptomyza parva
Gene Symbol: salm
Assembly: GCA_035044645.1
Location: JAWNNT010000101.1:13082957-13093544[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.9e-06 0.00033 20.9 0.9 1 23 499 521 499 521 0.98

2 7 9.7e-06 0.00064 20.0 2.1 1 23 527 549 527 549 0.98

3 7 0.016 1.1 9.8 1.5 2 23 937 958 936 958 0.98

4 7 6.9e-08 4.6e-06 26.7 0.5 1 23 964 986 964 986 0.98

5 7 0.00021 0.014 15.8 2.3 1 23 996 1018 996 1018 0.98

6 7 0.028 1.9 9.1 2.9 2 23 1430 1451 1429 1451 0.97

7 7 2.7e-08 1.8e-06 28.0 1.3 1 23 1457 1479 1457 1479 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.9e-06	0.00033	20.9	0.9	1	23	499	521	499	521	0.98
2	7	9.7e-06	0.00064	20.0	2.1	1	23	527	549	527	549	0.98
3	7	0.016	1.1	9.8	1.5	2	23	937	958	936	958	0.98
4	7	6.9e-08	4.6e-06	26.7	0.5	1	23	964	986	964	986	0.98
5	7	0.00021	0.014	15.8	2.3	1	23	996	1018	996	1018	0.98
6	7	0.028	1.9	9.1	2.9	2	23	1430	1451	1429	1451	0.97
7	7	2.7e-08	1.8e-06	28.0	1.3	1	23	1457	1479	1457	1479	0.99

Sequence Information

Coding Sequence: ATGAAAAATCACTTGGTTAACGTTTTGTGTGCAATGCGTAGTGACTTCAAGGATAATCACCAGGAgaccataaataaaatgatccAATTTGGTACCGTTAAATATGGCATTGTCAAACAGTTGAAGGATCGCGCCCGAAGCGCCGAAAAAGACATCGCAAGTGATCAGGAAGATAATGGCGCCTGCTCGCCGCTGACAACTGCAACGGCCAGCGCCAGTGCTGAGAATAGTCCGTGCCCCAGCCGGAGTCCGACACAACGACACAGCGAGGAGGACGAGGAGCCAGAGAGGAGGACAGAAGAGCAAGTACAAGCAGATatcaaagacaaagacagtGTCGATAATCATATCGATATCGATGCATCGCATGTCGAGGATCACaatcacaataacaacaacaataataacgatatcaacaatatcaacaaagTCAAGGTCATGACAAAGCCCCCGCTAGAACAACCTGAGGAAAACGAGCAGAAAGTGAATACCAATACAAACGCTTCAATGCCGAATTCACCCACCGCTGCAACATCCTCTCCAATGGAGGCGCAACCAGCCGGTACTACAGCCGTAGCGGTAGCTCCTCCTGATGACAAGGAGCTGGATGTCGATGTTGAAATCAAGGAGGAGGACGAACAGGAGCAGGAAGAGGAAATGCCACTGGAAAAGAGAACAACTGCGACGCCTCCCGTAAGCAATGCGGCGGCAGTTagtccagcagcagcagtcgctcAACAATTTGGGGCGACACCAGTCACTCTGGAGGCGATACAGAATATGCAGATGGCTATAGCACAGTTTGCGGCCAAGACCATTGCAAATGGTGCAACCGGAGCGGACAATGAGGCGGCAATGAAACAGTTGGCTTTCCTGCAACAGACACTGTTcaatttgcagcagcagcaactcttTCAGATTCAGCTTATTCAGCAACTGCAATCTCAACTGGCTCTTAATCAGGTCAAGCAGAACGAGgacgatgccgatgccgaggATGTCGAGCAGGAGGAGAGGGAGGATGGTGAAACAGATACCTATGAGGAGGAGGAACGCATTGCAGATATGGAACTACGACTTAAGGCCGAGGCTCGAATGGCCGAGTCCAAGGCACGACAACATCTGATCAATGCGGGAGTACCACTACCTGTGTCGCTGAAGCGTAAGCGAGAAACGGAAGCCAACTCCAAGTCGAGTAGTAATAAATCAGCTGGTGCTAAGATTTTCGGAGTGCAGGAGAGTGCACAGGATGCATTGTCTAAGCTAAAGGATATGGAGAATATGCCATTGCCCTTTGGCTCTGACCTGGCTTCGAGCATCATTACGAATCATGATGATCTGCCCGAGCCAAACTCCCTAGACCTACTGCAGAAACGCGCCCAGGAGGTGCTTGATTCCGCCTCACAAGGCATCCTGGCCAACAATATGGCCGATGACTTTGCTTTTGGCGACAAGTCGGGCGACGGCAAGGGTCGCAATGAGCCATTCTTCAAGCATCGCTGCAGGTATTGCGGTAAGGTCTTTGGTTCCGATTCGGCGCTACAAATTCACATACGATCTCATACGGGTGAAAGGCCCTTCAAGTGCAATGTTTGCGGTAGTCGCTTTACCACCAAGGGCAATCTCAAGGTTCACTTTCAGCGACATGCGCAAAAGTTTCCCCACGTCCCCATGAACGCCACGCCCATTCCAGAGCACATGGATAAGTTCCATCCACCGCTGCTTGATCAAATGTCGCCGGATAGTTCTCCCACGCAGTCTCCAGCTCCGGCTTCTAGTCTGCCGCCAACTTCAACATCCGCTCAGCCATCAATGTCGTTTGCATCGAATAATGCGTTTGCTGGACTTCAGGGTCTCTATCGTCCTCCTCTCGAGCTGTTAAAGTCCCtaggtgctgctgctggaagtACTGCCGGACTACCACATCCCTTCTTTCCACAAATGCCTGGACTGGGTGCAGCTCTGAAAcacagccagcaacaacaacagcaactgcagcaacaccaacagcagcaggctaGCCAGGACATGCCAACGGATCTGCGTAAGTCCTCGGGTCCCAGCTCACCCCATGATGAAGAGGAGGACGAGGACATGCCAGCCATGCAGCTGCCGGTCAAAACGGAACTCCTAGAGGAAGaaaaacaggaacaggaaGCCGAAGCACCGCCAGCTGATTGTGGCGAGTTAGAGCCTGAGCCGGAGCCCCTTCCTTTGGAGGTACGCATTAAGGAGGAACGTGTCGATGCTGTTGAAGAACAGGATGAAGAACGTCGGGAGCAACAAGAAGTGCCAGCTAAACGTCGAACGCCGACACCCACCCCAACAAATGCGATGCCACAAACACCTCCAATAATGCAccgacatcatcatcactcCCACCACCATGCTCTCTCCCATGGTCTGCCCAACTATCCACCGGTGGTTCAGCCCATTCAACCTCCACCAATGCATACCCAATGCTCGCCCGGTTCTCATTCGCATCTAGACCAGCTGCCAACGCCAGGACAACTGCCACCAACAATGCCGCATCGAGACGACTTTTTTGCGGAACGGTTTCCATTGAATTTTACCACAAAGACACTGTCGCCCGAGCACCACTCGCCCATTCGTTCACCGGCTGGACATGCTCATGCCCACATTCCGCGCTCACCCTTCTTCAACCCGATCAAGCATGAGATGGCTGCTCTGTTGCCTCGCCCACATAGCAACGATAACTCATGGGAAAATTTTATTGAGGTGTCCAACACCTCGGAGACAATGAAGCTCAAGGAGCTGATGAAAAACAAGAAGATCAGTGATCCCAATCAGTGCGTTGTCTGTGATCGAGTCCTTTCCTGCAAGAGTGCTCTGCAAATGCACTACCGTACTCATACGGGCGAGCGACCCTTTAAGTGTCGCATCTGCGGACGCGCCTTTACCACCAAGGGTAATCTTAAGACCCATATGGCTGTACACAAAATTCGACCACCGATGCGTAATTTTCATCAGTGTCCCGTCTGCCACAAGAAGTACTCAAATGCTCTGGTACTCCAGCAGCACATTCGTCTACATACGGGTGAACCAACGGATCTGACACCCGAGCAGATACAGGCTGCGGAAATACGTGATCCTCCACCCTCCATGATGCCAGGTCACTTTATGAACCCCTTCGCAGCGGCTGCCTTTCACTTTGGTGCCATGCCGGGTGGAGGTCCGGGCAGCCATGGCCCGGGAGGACCAGGCGGTGTGCCTGGAGGTCCGCACAACGGCGCCTTGGGCTCAGAGTCTTCGCAAGGTGATTTGGATGATAATATGGATTGTGGTGATGTCGATGACTTCGATGACGCTTCCTCGGAACACTTATCCAACGATCCAACGGGAGAAGAACGTCCTCGTTCCGGCGATGACTTCAAGTCATTGCTCTTCGAGCAGAAGTTGCGCATTGATCCCACCGGAGTGGTCAATATCAATAGTCATCATCAACATGCACTTCATCATCAACGCCCTCGCTCCTCTGCTAGCAACGCAAATTCAATAGGATCTGCTTCCGTCTCACCCTCAGCACCCGCCAGCCCGAGTTTCCAGGTCAAACCAAGTTGTTCTTCACCCGTTCGTTCGGTTTCTGAATCCTCACAGGGTGCTCTGGATTTGACGCCACGTGCCGTTGCCGCTCCTCCACCCCCTGCACCACAACCTCTTGCCTCCTCCAGCTCGAGATCTCGCTCTCCACCTCCACCGAAAGAGAAGACGATGAGTCCGTTAAGCCAGCAGGCGCCAACGGCACGCAGTCCCAATGCTCCTACCTCGCTGCTTTCCTCCCAACTGGCACCCTCGGTTGGAATCGATTGCCTTCCACCCGGTCTGCATCATCacctacagcaacaacatcatcatctgaTGCAGCAACAGGCAGCCgtggctgcagcagctgctgcccagcatcatcatcatcagatgCAGCAACATGCGGTCGCCCTGCATCAGCATCAGGAGCAATTGCGTCGTGAGGCACAGGAGGTGCAACAaaaagctgcagctgctgccgcggctgccgctgttgctgcacAACGCCAAACATCGCCACAACCTCCAGCTCGGGCAGGTGAATCACCTGGCGGTCCACCAGGTGGTCCGGGAAATCCTCTGATCGGTGCTCGACCACCATTCGGTATGTTCCCCAATCTGCCCATCTTCCCGCCGGCCACTACACAGAATATGTGCAATGCCATGAATCAGATAGCACAATCCGTGATGCCAGCGGCACCCTTCAATCCCCTGGCTCTGAGTGGAGTTCGGGGCAGCACCACATGCGGCATCTGTTACAAGACATTCCCCTGTCATTCGGCACTCGAGATTCACTACAGAAGCCACACCAAGGAGCGACCCTTCAAGTGCAACATCTGTGATCGTGGATTCACAACTAAGGGCAACCTTAAGCAGCATATGCTGACACATAAAATCCGCGACATGGAGCAGGAAACCTTCAGAAATCGAGCAGTAAAGTATATGAATGAGTGGAGCGATGAACATGAATAA
Protein Sequence: MKNHLVNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSAEKDIASDQEDNGACSPLTTATASASAENSPCPSRSPTQRHSEEDEEPERRTEEQVQADIKDKDSVDNHIDIDASHVEDHNHNNNNNNNDINNINKVKVMTKPPLEQPEENEQKVNTNTNASMPNSPTAATSSPMEAQPAGTTAVAVAPPDDKELDVDVEIKEEDEQEQEEEMPLEKRTTATPPVSNAAAVSPAAAVAQQFGATPVTLEAIQNMQMAIAQFAAKTIANGATGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQVKQNEDDADAEDVEQEEREDGETDTYEEEERIADMELRLKAEARMAESKARQHLINAGVPLPVSLKRKRETEANSKSSSNKSAGAKIFGVQESAQDALSKLKDMENMPLPFGSDLASSIITNHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFGDKSGDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTQSPAPASSLPPTSTSAQPSMSFASNNAFAGLQGLYRPPLELLKSLGAAAGSTAGLPHPFFPQMPGLGAALKHSQQQQQQLQQHQQQQASQDMPTDLRKSSGPSSPHDEEEDEDMPAMQLPVKTELLEEEKQEQEAEAPPADCGELEPEPEPLPLEVRIKEERVDAVEEQDEERREQQEVPAKRRTPTPTPTNAMPQTPPIMHRHHHHSHHHALSHGLPNYPPVVQPIQPPPMHTQCSPGSHSHLDQLPTPGQLPPTMPHRDDFFAERFPLNFTTKTLSPEHHSPIRSPAGHAHAHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGAMPGGGPGSHGPGGPGGVPGGPHNGALGSESSQGDLDDNMDCGDVDDFDDASSEHLSNDPTGEERPRSGDDFKSLLFEQKLRIDPTGVVNINSHHQHALHHQRPRSSASNANSIGSASVSPSAPASPSFQVKPSCSSPVRSVSESSQGALDLTPRAVAAPPPPAPQPLASSSSRSRSPPPPKEKTMSPLSQQAPTARSPNAPTSLLSSQLAPSVGIDCLPPGLHHHLQQQHHHLMQQQAAVAAAAAAQHHHHQMQQHAVALHQHQEQLRREAQEVQQKAAAAAAAAAVAAQRQTSPQPPARAGESPGGPPGGPGNPLIGARPPFGMFPNLPIFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNEWSDEHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01321413;
90% Identity: iTF_01321413;
80% Identity: -