Spar012064.1
Basic Information
- Insect
- Scaptomyza parva
- Gene Symbol
- -
- Assembly
- GCA_035044645.1
- Location
- JAWNNT010000134.1:11178099-11184345[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.049 3.2 8.3 0.2 1 23 1334 1357 1334 1357 0.94 2 13 4.4 2.9e+02 2.2 0.2 1 23 1524 1546 1524 1546 0.91 3 13 0.00018 0.012 16.0 2.7 2 23 1549 1570 1549 1570 0.97 4 13 6.8e-05 0.0045 17.3 0.2 3 23 1578 1598 1576 1598 0.98 5 13 5.7e-07 3.8e-05 23.9 4.1 2 23 1605 1626 1604 1626 0.97 6 13 5.4 3.6e+02 1.9 0.4 5 23 1639 1657 1637 1657 0.96 7 13 1.3 88 3.8 5.4 3 23 1664 1685 1662 1685 0.93 8 13 0.14 9.4 6.9 0.2 2 23 1696 1716 1695 1716 0.96 9 13 5.4e-05 0.0036 17.6 0.4 1 19 1722 1740 1722 1744 0.95 10 13 1.6e-05 0.001 19.3 0.5 1 23 1752 1774 1752 1774 0.98 11 13 0.0001 0.0068 16.8 7.6 1 23 1780 1802 1780 1803 0.96 12 13 0.0002 0.013 15.9 5.9 1 23 1808 1830 1808 1830 0.98 13 13 0.028 1.9 9.1 8.2 1 23 1836 1858 1836 1859 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAATGTGCAGTGCCCCGTGTGCACCTTGTATTTGCACGCGGGAATGAATCTCTCCGATCACTTGGAGACACATCCCAAGGAGCAGGTCATTAGGGCACTGGTGCAAATGACCATTGTTGGCAACTCTGGCGGACTGGAAAGCGCCCTGGCGGCAGCTGCTATatccagcagcagtagcacaAACTCTACCCCAACAGAGAGCGCTACCACAACTTCAGTTGCGGATGTCAAACCAGATGTGAAGCCAGTAGCACCCACACCAACAACGCAACCACCACTACCACCgccacaaccaccaccaccaacagcacctgcagcaacagccacaacgcAATCAACGGCATCAAAAGTTGTCGCATTGCTGGGCAACGCcagcagtagtagcagcagcaacagtagcaacaacagcaacaaattgaacaaTCCACCGATTAAGGCAGAAAAATGCGCGCCACCCACGACTGAGGCGCCAGCCACcacatccaacaacaacatcaacgcaCCCACCATTAGCAGCGAGGCCGCTGTCTATGCGGCAACCATGCAAACAGAGTATCGTtacgaacagcaacaacaacaacaacagccacagcagcagcagctacatgGCTTTCCACGTGGCACCACCACTACACTGGTGATACCGCAAGCGCCACAGCAGCATCATACTTTCTTGGCCAACCAACAGCCGCCTGCGCACTTTGCtcttcaacagcagcagcagtcgacCATGAAGTTTAcatatgcaacagcagcgttGCCTCCGCCTCCCCTGCAGCTTTTTGCACAGCAGACGACACCAACGCAGCCGCATCAAAAGCCTCCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAgcacaaccaaaacaaacaacaacataaccaacaccagcaacaacaacagcaacacataAACTTACAACAACATACCGTAAATGTAGCACCACCGAGTGGcaaacaacacagcaacaaaatccaCACGGATATCTTTCTGaatccaccaccaccaccaccaccacagcTAACAATTCCATCAGCGTTGTCTTCGTCGTTATCCTTGTCGTCATCGGCGACCTCCTCAAGACTGCAACATCCCCAACAGCACCATCAACAAGCCCatgcagccagcagcaacaacaactatgcaGTTGCCAGCTGTTCCAGCTCCTCGGTGGCTCTTATATCCGCCACAACGTCTGCACGTGCCACCAGCCGCCAGTCAAGTAATTCACCATTTGGTGCACTTCTTAATGCAGCTGCTCATGCTGCCTGCTCCTCACCCGCCGCTTCCAGCGGAGCGTCAGTGCTGCGCTATGCGGAGTCGCCAGTGGCTCACTATTTGGAGCGGGAGAATGGTGATTTTATAGTGCAGGAGACGCCCAAACACATTGTTGAGTGTGTCGAGAAGGAGGATGGGGAATTCTCGGTAATAGAGCGCATCTATCAGTCACCACCCAGTGTACTCCATAtacacgacgacgacgaagaagaagaggaggaggaagaagaagaggaagaagaacaATGTTGGGCAAACAGCGATGACGAGGATCACGTGAAAGTACTACATGAACATGTTGACGATGGTGACGATGAACACGAGGATAGTCGCAGCCGAGTTGGCCGCAAATCCACAACGAAAAAATCACGTAAATCAAAGTCGAGCGGCAGAATGCACAAACGTGCATCTAAACATCAGTTGGCCACGACAGAGGATGAGGATGACTTTATGAGCATTGGCAGCAGTTGTGCCGAAAGCGATCATCAGTcagaggagcagcagcaacaaccacaacagcagcagcagccgcaacaacagcagcatccacAACCGTCAACATCGACTGCGACACAAGTGGCAAATATATCGCCGCCCCAACTTTGTACTGCGCCTTCGACGAGCAGTGGAGCAGCTGCGGCTTGTTCCCCGAGCAGTTCCAAATTCACGGGCACCGGCACCATCAAGTCCAAAAAGAATCGGGTGACGGTTCTCAGCGATGTGCCGCTCAACATGAATGAGTATCTAGATCTGGTTGGCAACATTGTGGCCTCTAGTCGCATTGGTGCAGTGCGTCCGTTCGCCGCTGTAGCACCCATACCGTTAGTTAAGGTGGAAAAGGAGGAGCCAATGGACGAATACGAAGCCGTTCCGGTCGAGCACGCCAgtggcagcagtagcagtaatAGTAGCAGCAGTGGCCATGGCACCACTAGCGTCATACGCATGGCCAGCACCAGTGCAAATGTTGCTGCCGAGGATCTCACACAGCCGCCGCCCATGAAAGTAGAGGTGGAGCCAACGGTCCTGTTGCCCCAACGCTTCTCGACACCAGCTCAGTGGACCCCGACGCGTGCACCCAAGAAATTAGTCATCAAACCAAAGGTAGCGCCATCGGCAACGTccacaacggcgacgacgtcGAAAAAGACTGAGAACAAAAACGCTGccggtagcagcagcagtagcaacagtaATTGCACCGAATCCCACAGCATATCATTAAACACGCCCGCCGAGCTGGTGCAGATCAAGAACGAGAACGTCGAAGCATCCACATCCAGTGGCAGCATATTGGAAAAGCATCTGACAAATAGTTCTGCGGCACAGCAAGCACGTAAACACTCCGCAGTTAACGATGATGATGCACGAGTGTTGCTCGAGTTTGCCAACTCCAAACAACTGCCTTTGCCAGGCACGAGCAATCATACAACGTTTGTGGTTAATGCGGCAAGTTTTGCTTCGGCGGGTTCCGTATTTGCCACAAGCGGTAGCAGCGGAAACACCAGCACTGGCAATGTGCACAAGTCAACCAAGCCTGGCGACGAATATATTCTGCCAGATGACACTAAACTGGAGGTAGATGAAATTGTGATATCCTCCTCGTCTTCCTATGCCTCCACCTCGCAGCAGCAtcttcaacagcaacaacagcagcagcaacaacaacaatctttgCAACAGGCGCAACCGTCCGCCTTCACTGACTTTAATTTTCTGTACCACCAaaacacagcaacaggaactgcaacggcagctgcagcggcagcaacaacaacgtcaacaacGATCGCTTCCAATTTTTCACCATTTGGCAttccacagcaacaacagcagctgcagttgcaacatCCACAGCACGGCTCCAGTGAGGCAACTAATGCAGCAACGCTAGCATCCTCCTCCAGCAATTCGTCTGTCTTGGATCAGGAGTGCTCGATGAATGCCACTTTCCGTGTGGCCAGGCCACTAAATATGCTAAGCGGATGGTATCAaccccagcaacagcaggcaacCACTTCATCTCACAGCTCGCATGTTGATCAGCCCAGCAATTTTATTGCAGCTCTGTCCGCTGTCGAATGCTGCAATGCGGCCGTCGATAGCGATATGAGTGAGGCTAAGTATTTGGATCTGGATGCCTGTAAGCGGGAACAGCTTAGTAATAGCAGCAGCCATTTGCCCTCCGCATCCACCACATCGTCATCGTTTCAAGCCGCCGCAACGGAGAGCAGTCTTGTTGGGGGTTTGGGTCTGAATATACGCAGCGATGAGAAGATGCCTGCCAAGGGTGAAATATCCGAGCAGGAAAGCAACTGCGACATTGAGAACTCCTGGAGTCAATCGaTGTATGGAGACATATCACAGCGTTATTTTAGGAATCAATTTACGGATGGCTACAATCAGCAGATGACTGATTGGCGTCACGGTTACTATCCGGCACAGGATCTCAGTGGCCAACAGAGGGAGCAAAAGCGCTTTGACTTTAACGCGGTTGCCTCGGAGTACGCACAGCCGACAGAACTTGACGCTTCCTCGAGCTCAACTAGACATAATCATTTGTTGGATGCACAGCCCACCACTTCCTCATCTTCATCGGCTTTGTTGGCTGGTCCACCAATAGCCTCGACATCTCGCGCTGCCGCCGAAGCGGAGGCAGTTGCAGCAGCGCTGGCGCAACGCAAGCCACCACGTCGCAAAATCTACAAGTGTCCGCACTGTGTGGCCATCTTCGAGAAGCTAAAGGAGCGGAATGCCCACATGATTGGTGAGCACAACTATGTGCGTCAGAATCGTCGACTCATCTGCACACAGGCGCTGGTCAACGTCGCGATGCTGGCACAACCGCAGCCTCAGCAGACTGAACAGCAActagagcagcagcagcaacagttgctgcagaCGGTGCACAGCACGAGTGGTGCAGTACAAGAAGACTCTAAGGATGGTATTGTTAAGATCAAGCAGGAGCATTGTCTTGATAAACACGATGCAGCATCGGAGCAGTTGCTGGGACACTTGGAGTTGCCGGATGTCAAGGATGCTGGGCTGCTCGATGACAGCGGTGAAAACGGACGCGATGCGGACATAAAACCACCAACAAGCGGAACTGATCTGGACGAGAAACCAGGCATAGCACCGTTGGCCATGACAACACCCGCTGCCAAATTGGCGGCTTTATATCGCATGCTAATTGCCTACAACGAATCCAAGCTCGGTCAGGAGCGAAACAATCTCAGCGAACTGGAGCAAAAGGCCATGGAGAAATCCATATTCTTATGCTACATTTGCCGCACCGATTTTCCCTCTGTCAAATTGTACGATGCACATCTAACTGAACATCCCGCCGAGTGTTTCACGTGCGGCAAGAAATTCTATCGCTGGAAGAACTTTTCGTTGCATCTGAAACGTCATCTGGGCTGGAAGGAGTTCGGCTGTTATGTCTGCGACAAGAAGTTTGTGGTGCGCAGCGCTCTCGTCGAGCACATGCGCATGCATACTGGCCAAACACCACTGAAGTGCAAGATATGCGGTAAAAAGTTCAAGCGTTACTCCAACTTAACGCAACACCGCAAGCGTCACACAAAGATGACGGTGCGCAAGAAGGAATATGTATGCCACTGCGGCGAAGTGTTACCCTCAAAGGCGCGTTTCTTGTGGCACAAGGAGACGCACGACTTGAAGCCTAAATGCTGTCCGTACTGTTGTGATCGTTTTGTGCATGCCAATTCGCTGCGTCGCCACATTCGGCTTGCGCATTCCGATAAGTTTGACTATGCTGAGCCCATGGAGTGTCCAATGTGCAAACAGATCTTTGCCAAGACATCGATTAAAGCGCACATGGCGACGCATTCAACGGACCCGCAATACGATTGCGCCATTTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATACATTCGTGGGTGCATGCGAATCGCACGGCCAAACCTTTCAAATGCGAGTACTGCCCTAAGGCTTTTGTGCGCGAATTGGACTTCAAGAACCACATGAATGCGCATAAGCAGATCAAGCCGTACACCTGCGAGTATTGTGGCTGCAAGTTCATACGTAAATACAACTATATGAGGCATCGGCGAGAGCATCACGGCAACAAGAAGTTTACGTGCGATCAGTGCGACAAATCTTTCCATCGCCACTACTATCTGATTGAGCATCGGCGCATTCACACTGGCGAACGACCGTTCCACTGCACCATCTGTGGCAAGAGCTCGACCACGAAGACCAATCACAACAAGCATCTGAAGATTCATCATTCGCGCGATCCTTTTACTGTTGAGGTCTAA
- Protein Sequence
- MVDNVQCPVCTLYLHAGMNLSDHLETHPKEQVIRALVQMTIVGNSGGLESALAAAAISSSSSTNSTPTESATTTSVADVKPDVKPVAPTPTTQPPLPPPQPPPPTAPAATATTQSTASKVVALLGNASSSSSSNSSNNSNKLNNPPIKAEKCAPPTTEAPATTSNNNINAPTISSEAAVYAATMQTEYRYEQQQQQQQPQQQQLHGFPRGTTTTLVIPQAPQQHHTFLANQQPPAHFALQQQQQSTMKFTYATAALPPPPLQLFAQQTTPTQPHQKPPPAYGAAISQIRSQHNQNKQQHNQHQQQQQQHINLQQHTVNVAPPSGKQHSNKIHTDIFLNPPPPPPPQLTIPSALSSSLSLSSSATSSRLQHPQQHHQQAHAASSNNNYAVASCSSSSVALISATTSARATSRQSSNSPFGALLNAAAHAACSSPAASSGASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEEEEEEEEEEEEEQCWANSDDEDHVKVLHEHVDDGDDEHEDSRSRVGRKSTTKKSRKSKSSGRMHKRASKHQLATTEDEDDFMSIGSSCAESDHQSEEQQQQPQQQQQPQQQQHPQPSTSTATQVANISPPQLCTAPSTSSGAAAACSPSSSKFTGTGTIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAVRPFAAVAPIPLVKVEKEEPMDEYEAVPVEHASGSSSSNSSSSGHGTTSVIRMASTSANVAAEDLTQPPPMKVEVEPTVLLPQRFSTPAQWTPTRAPKKLVIKPKVAPSATSTTATTSKKTENKNAAGSSSSSNSNCTESHSISLNTPAELVQIKNENVEASTSSGSILEKHLTNSSAAQQARKHSAVNDDDARVLLEFANSKQLPLPGTSNHTTFVVNAASFASAGSVFATSGSSGNTSTGNVHKSTKPGDEYILPDDTKLEVDEIVISSSSSYASTSQQHLQQQQQQQQQQQSLQQAQPSAFTDFNFLYHQNTATGTATAAAAAATTTSTTIASNFSPFGIPQQQQQLQLQHPQHGSSEATNAATLASSSSNSSVLDQECSMNATFRVARPLNMLSGWYQPQQQQATTSSHSSHVDQPSNFIAALSAVECCNAAVDSDMSEAKYLDLDACKREQLSNSSSHLPSASTTSSSFQAAATESSLVGGLGLNIRSDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYNQQMTDWRHGYYPAQDLSGQQREQKRFDFNAVASEYAQPTELDASSSSTRHNHLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQALVNVAMLAQPQPQQTEQQLEQQQQQLLQTVHSTSGAVQEDSKDGIVKIKQEHCLDKHDAASEQLLGHLELPDVKDAGLLDDSGENGRDADIKPPTSGTDLDEKPGIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYICRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMTVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00583141;
- 90% Identity
- -
- 80% Identity
- -