Basic Information

Insect: Scaptomyza parva
Gene Symbol: -
Assembly: GCA_035044645.1
Location: JAWNNT010000065.1:9154049-9156555[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.059 3.9 8.1 3.8 1 23 266 288 266 288 0.98

2 11 1.4e-05 0.0009 19.5 0.5 1 23 294 316 294 316 0.99

3 11 0.00034 0.023 15.1 2.5 1 23 322 345 322 345 0.97

4 11 0.36 24 5.6 3.8 1 20 351 370 351 373 0.95

5 11 0.0089 0.59 10.7 1.7 1 23 379 401 379 401 0.97

6 11 4.1e-05 0.0027 18.0 1.2 1 23 407 429 407 429 0.98

7 11 0.00014 0.0091 16.4 1.2 1 23 437 460 437 460 0.96

8 11 0.0021 0.14 12.6 0.3 2 23 467 488 466 488 0.97

9 11 0.0018 0.12 12.8 1.2 1 23 494 516 494 516 0.98

10 11 2.8e-05 0.0019 18.5 0.8 1 23 522 545 522 545 0.96

11 11 2.2e-06 0.00015 22.0 3.7 1 23 559 581 559 581 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.059	3.9	8.1	3.8	1	23	266	288	266	288	0.98
2	11	1.4e-05	0.0009	19.5	0.5	1	23	294	316	294	316	0.99
3	11	0.00034	0.023	15.1	2.5	1	23	322	345	322	345	0.97
4	11	0.36	24	5.6	3.8	1	20	351	370	351	373	0.95
5	11	0.0089	0.59	10.7	1.7	1	23	379	401	379	401	0.97
6	11	4.1e-05	0.0027	18.0	1.2	1	23	407	429	407	429	0.98
7	11	0.00014	0.0091	16.4	1.2	1	23	437	460	437	460	0.96
8	11	0.0021	0.14	12.6	0.3	2	23	467	488	466	488	0.97
9	11	0.0018	0.12	12.8	1.2	1	23	494	516	494	516	0.98
10	11	2.8e-05	0.0019	18.5	0.8	1	23	522	545	522	545	0.96
11	11	2.2e-06	0.00015	22.0	3.7	1	23	559	581	559	581	0.97

Sequence Information

Coding Sequence: ATGTCGAAACGCACGCGCGACTCCGATTCAGAGGATTTGCAATCCTTTTTAGCGAATTTTCACAAAGAAATCGAGGAGGGAAATGCTGATGTTAATGACGCCAAGACAAATGACATTTCTaagcaaaaacacataaaaggAGAGGAGAACTATGAAGAGGTTGaaggtgatgatgatgacgatgaagaCAAGTATTTTATTGACGATGAAGGCAATTGTTATATTAAAACCACTcccaagaaacaacaacaacttaaaagGAAGCTAAAGACACAAACAACGCCGAGGGCGTCCGCACCACCACAATCACCAGAGACACCAATTTCAATACGCAGCGCAAGTCGTTCAACTGGCAAagCTATTAACCTACGTCCAGCCAAGGTGAAACCGGAACCGTCACCGCAAAAAGCACCCAAAGCAATTAATATACGCCCAGCATCAACGAGAAGGACGTCGACGAGATCAACATTATCAGAAGCAAGCTCTCCCCGAGCATATTTACGTTCAGCAAGGAACAAAGTGAAAAAGCCGGAAACAGAGGTGATAGACAAAGTTGTTATAGAGAAATTGGAAGATATTGTGGATGAACCGAGTGTTGGCAATGTAAGCACAGTTTCCATTGATCTATCGGACACAAGAATTGATCCCACCACAAACAAGGACAACAACTCGGAGGATGAGGTATACGAATTTGACGATAATGCTGCCAACGTCTCCACGCAACCAGATGTAGATTTTGTGCTCACCGGCAAGCAATACAAGTTGAAGCCATCCAATGCGGATGCAGCACAGAAGTATGCCTGCTCTCATTGCAGCTATACGACAAACAAGAAATTTCTAATCTCACGCCATGTGCGCTCCCACGACGCCGAACTCTCGTTTAAGTGTTCAATATGTGAACGCGGCTTCAAGTCCAATATGGGCCTGGTCAATCATCTAAATACTCATATGGGCAACAAACCACATAAGTGCAAGCTCTGCGAGAGCGCCTTTACCACCAGTGGCGAGTTGGTACGCCACACACGCTACAAGCACACTAAGGAGAAACCCCACAAGTGCACCGAATGCAGCTATGCCAGTGTCGAGTTAACCAAGCTCCGGCGTCACATGACCTGCCATACAGGCGAGCGTCCATATCAGTGTCCGCACTGTACATACGCCTCGCAGGATATGTTTAAGCTAAAGCGTCATCTGGTCATACACACCGGCGAGAAGAAATACCAATGCGACATCTGCAAGTCCCGCTTTACTCAATCCAACTCGCTCAAGGCGCACAAACTTATCCACAGTGTGGTGGATAAGCCCGTGTTCCAGTGCACCCTATGTCCCACCACATGCGGCCGCAAGGCAGACCTGCGCACCCACATGGCTAACATGCATACCTCAGATAAGCCGATCGTTTGCAAGCGTTGCGGCCAGGAGCTGCCCGACCGTTATCAGTATAAGCTGCATATTAAGTCACACGAAGGCGAGAAATGCTATCGTTGCAGTCTGTGCAGCTATGCGTCAGTATCTCAACGCCATCTCGACTCGCACATGCTGATACACACGGATAGTAAGCCCTACAAGTGTGAGCTATGCACTCAGGCGTTCCGGCAACGTCAGCTACTTCGACGGCATGTGAATCTCGTTCACAACGAGGACTACAAGCCACCAGAACCGCGCGAAAAAGTTCATTCCTGCCCAAGTTGCAGTCGGGTTTTTACCCACAAGGGTAACCTGATGCGCCACATGGAGACACACGATGATACGTTAAATGCGCGTGAGGAGAAACTGAAGCTGAAATTGGGTCGCAGTGTGCGCGTTCAGCCGGACGGTAGCATTGTGACTTTAGCTAGTTCCGAAATTGATTTGCTGGACAAGAGCGATGATATTTCCATTGACCTCGATGAGCAGTATGAGCTTACGGAGATTCAAGAAATCGATGAGCAGGAGGAAGAAGTGTCAAACGAGGTCGTTATGAAATCATTTGCCATTCCGCCACCACAGCTTCAAACAAGAAAAGTCAAACAACCAATCGAAAAGGCAGAACGCGGGCAGAGCACGTCTAGTAAGCCCGTCATTATTAATCGGCAATTGAGAGTACCTCGACTCAAACGCGAGGTGAAAAATCAAGGTGGCACATTCCGCATCAAGGAGGAGCCAGATGCCAATGAGTTTACCGTGGAACTGCagagtggtggtggtgatggtgatcAATTTATTGTACAACTTGTCAACGATGATAACGAAGTTGTGGTAAAACGTGAGCCCAAGATCAATGCCGGCAATTGCTTTGGATTCGAGGATGATGCCGATGCCGAGTATGATGAGGTGGCAGAAGTGGACGCCACATCGCAGGAGTTTCTGCAACTAATGGACATGATTGAGCAGGATTcgtaa
Protein Sequence: MSKRTRDSDSEDLQSFLANFHKEIEEGNADVNDAKTNDISKQKHIKGEENYEEVEGDDDDDEDKYFIDDEGNCYIKTTPKKQQQLKRKLKTQTTPRASAPPQSPETPISIRSASRSTGKAINLRPAKVKPEPSPQKAPKAINIRPASTRRTSTRSTLSEASSPRAYLRSARNKVKKPETEVIDKVVIEKLEDIVDEPSVGNVSTVSIDLSDTRIDPTTNKDNNSEDEVYEFDDNAANVSTQPDVDFVLTGKQYKLKPSNADAAQKYACSHCSYTTNKKFLISRHVRSHDAELSFKCSICERGFKSNMGLVNHLNTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECSYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHLVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCTLCPTTCGRKADLRTHMANMHTSDKPIVCKRCGQELPDRYQYKLHIKSHEGEKCYRCSLCSYASVSQRHLDSHMLIHTDSKPYKCELCTQAFRQRQLLRRHVNLVHNEDYKPPEPREKVHSCPSCSRVFTHKGNLMRHMETHDDTLNAREEKLKLKLGRSVRVQPDGSIVTLASSEIDLLDKSDDISIDLDEQYELTEIQEIDEQEEEVSNEVVMKSFAIPPPQLQTRKVKQPIEKAERGQSTSSKPVIINRQLRVPRLKREVKNQGGTFRIKEEPDANEFTVELQSGGGDGDQFIVQLVNDDNEVVVKREPKINAGNCFGFEDDADAEYDEVAEVDATSQEFLQLMDMIEQDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01320630;
90% Identity: -
80% Identity: -