Spar005302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza parva
Gene Symbol
HINFP
Assembly
GCA_035044645.1
Location
JAWNNT010000090.1:5968319-5974285[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.59 39 4.9 0.0 2 23 235 257 234 257 0.95
2 20 0.38 25 5.5 0.1 6 23 266 283 266 283 0.99
3 20 0.0016 0.1 13.0 2.0 1 23 289 311 289 311 0.99
4 20 1.5e-05 0.001 19.4 4.4 1 23 320 342 320 342 0.98
5 20 0.029 2 9.0 0.1 2 23 351 373 350 373 0.94
6 20 0.01 0.68 10.5 0.0 3 23 381 401 380 401 0.96
7 20 0.0065 0.43 11.1 0.6 2 23 410 432 409 432 0.96
8 20 4.7 3.1e+02 2.1 0.4 2 23 441 463 440 463 0.70
9 20 1.6e-06 0.00011 22.4 2.1 1 23 469 491 469 491 0.98
10 20 0.00029 0.019 15.3 7.0 1 23 497 520 497 520 0.98
11 20 0.28 19 5.9 0.1 3 23 784 805 782 805 0.95
12 20 0.4 26 5.5 0.2 6 23 814 831 814 831 0.98
13 20 0.0029 0.19 12.2 1.7 1 23 837 859 837 859 0.99
14 20 1.5e-05 0.001 19.4 4.4 1 23 868 890 868 890 0.98
15 20 0.029 2 9.0 0.1 2 23 899 921 898 921 0.94
16 20 0.0013 0.087 13.3 0.0 3 23 929 949 928 949 0.96
17 20 0.0047 0.31 11.5 0.7 2 23 958 980 957 980 0.96
18 20 3.3 2.2e+02 2.6 2.3 2 23 989 1011 988 1011 0.92
19 20 1.7e-06 0.00011 22.3 2.0 1 23 1017 1039 1017 1039 0.98
20 20 4.9e-06 0.00032 20.9 2.8 1 23 1045 1068 1045 1068 0.98

Sequence Information

Coding Sequence
atgtgttttctgtGCACCCAGTGCACAGATTATGATAATGACATTATCCGCTTCGGCACACCAGAAGCTGAATCGCTTGATATTAATCAGATAatagaaaaacacttttggtTGCGAACCAAGGATATCGATGGAAACATATGTGGCACTTGCTGGGATCAATTGTATGCATTCCATAACTTTTATACAAAAGTGGAACAGGCGCACGCAAAGCTGctacaaaacataaatgaaacGATCTCAACGTATGAGGCGGAGGTCATTGCTGAGGCAGCATTACAAGTAGAGGTcaatgtaaatttaataaaacagGAGAGCCAAATAACGACCAGCGTCGCGGCTGCTGTAAAGCGCAGGCGTGGACGTCCCCGTAAGCAGTTGGCCATCGAGACAGCCACAGCTATTGATAGTAACGAATCAAATGCCGTGCAAGAACAAATCGATTCTAATGAGATAAAAATTGAAATCCCGCAATCCAAAGTGTTTTATGATGAAGATGATCAAAGTACAAGTGattacacaaaacaaagcgAGATTGAAAGCGAATATGCTATCAACGAGCCCaggcaaaacaaaaggaaGAGAACGATTAAAAAGCGTCGAATCAAGTTAAAGGTTGACAGTAAGCTAAAAAAGGCCAGCGTTAATAATGTAAGAAAATCGGAAGAGTTAAACAAGTACATTAAGGAGCACTTCAAAGTTATGTGTCCTGTTTGCAATGTACCTATGGATGATTTTTCCGAGATGATGGCACACACACGTAAGGAGCACAATCAGCGCGGCTATGCCATGTGCTGTAATCGAAAATTCCCAGATCGTGGCGTCCTTGTTGATCATTTGCAACGCCATCAGAATCCCGAACTCTTTAAATGTGACATTTGCCATAGTGTTGTAAGCCAACGTACAACTTTAGAGTTGCATAAGCGCATGCACGAGATCAAGGAACGTGGTTACCTGTACCAATGTGAGCATTGTTCAAAAAGCTTCTATAGCTCCGCTAACTACAAGCGGCATAAGCTTGTGCATATTCCCAGGGAGCAGTGGAATGTGCCCTGCACCAGCTGCAGCAAGGTTTTCGCCAATGAAATGCTAATGAAAGAACACGTTAAATTGGTGCATTTGAAAAAGTTCAACAAGATTTGTGATGTATGTGGCAAATCCATACGTGGTCGCGAAGTTTTGGCACGTCACATGGCGGAGCATTCTGGTGCGCCGCAAAAATTACTCCAATGTCATCTGTGTGAATCGACGCTGACTAGCAAACCTGGATTGGCGCGCCACATTAAAATGATGCACACAGCGGAAAATCTGCAGCCAATAGAATGTGAAATATGTCTTAAAATCTCGCCCAGCCTGCAGGCACATCAGCGCCACataaagtacacacacaatacGGCTCGTACACACCAATGTACCATGTGCGAAAAAGCATTTAAACGACCCACCGAATTGCGCGAACACATGACAACACACACGGGGGAGGTATTGTATACATGTCCTCATTGCCCGAAGACGTTCCACTCGAACGCCAATATGCATGCGCATCGTAAAAAGAAGCACTTCAAAGAGTGGCAGGAgtatcatcagcagcatcaggcACGGCATCGCAAAGCTGACACCATAATTTCAGTGAGCGCGCGCAAGACAACGAAAAGTACAACAGACACAGTAGCAACAGGAGCAGAAGTGGAAGTTGCCTCAACAACGTCGGCAGAGAAGACGACAGCTGAATGTGAATTGGAGaCCAAGGACGTCGATGGACACATTTGTGGCACTTGCTGGAACCAATTGTATGCATTCCATAACTTTTATACAAGAGTAGAACAGGCGCACACGAAGCTGctacaaaacataaatgaaacAATCTCAACATATGAGGCAGAGGTCTTTGCTGAGGCAGCGTTACAAGTGGAGATCAATGTGAATGTGTTAAAGCAGGAGAGCGAGTTTACGGACAGTGTCGCGGCTGGTGTAAAGCGCAGGCGTGGACGTCCCCGTAAGCAGCTGCCCATCGAGACGGCCACAGCTATTGATAATAACGAATTTAATGCCGTGAAAGAACATATCGATTCCCAGAGAAATACTGAGTACCCGCAAGGCCATCTGAACATAGACGATGTGtttgatgatgaagatgatcaAAGTCAAACCGATTACATACCACAAAGCGAGATCGAAAGCGAATCTGCTAAAGATAACGACAAGcccaagcaaaacaaaagaaagcgAACGATTAGAAAGGGCCGCACCAAATTAAAAGTTGTCAGCAAGTTAAAAAAACCCAACGGAAATGATGTAAAAAAAACGGAAGACTTGAACGAGTTTATCAAGAAGCACTTCAAGGTTCATTGTCCATATTGCAATGTACCTTTGGGTGATTTTACCGAATTGGTGGCACACTCTCGTAAGGAGCACCAACAGCGCGGCTATGTCAAATGCTGTAATCGAAAGCTCAGAGATCGCGGCGAACTTGTCGATCATTTGCAACGCCATCAAAATCCCgaaatgtttaaatgtgaCATTTGCCATAGTGTTCTGGGTCAACGTAGTACTCTGGAGATGCATAAGCGCATGCACGAAATCAAGGAACGTGGTTACCTGTACCAATGTGAGCATTGTTCAAAAAGCTTCTATAGCTCCGCTAACTACAAGCGGCACAAGCTTGTGCATATTCCCAGGGAACAGTGGAATGTGCCCTGCACCAGCTGCAGCAAGGTtttcGCCAATGAAATGCTAATGAAAGAACACGTTAAATTGGTGCATTTGAAAAAGTTCAACAAGATTTGTGATGTTTGCGGCAAGTCCATACGTGGTCGCGAAGCATTGGCTCGCCACATGGCGGAGCATTCTGGTGCGCCGCAAAAATTACTCCAATGTCATCTGTGTGAATCGACACTGACTACCAAACCCGGATTGGCACGGCACATTAAAATGATGCACACAGCCGAGAACCGGCAgccaatgaaatgcaaaatatgcTCTAAGATCTCACCCAGTCTGCAGGGGCATAAGACCCATATGAAGTACTCACACAATACGGCACGTAGACACCAATGCAGCATGTGCGAGAAAGCATTTAAACGACCCACCGAATTGCGCGAACACATGACAACGCACACTGGGGAGGTATTGTATACATGTCCTCATTGCCCGAAGACGTTCAACTCGAACGCCAATATGTTTGTGCATCGTAAAAAGATGCACTTCAAAGAGTGGCAGGAGTATCATCAGTCACGGCTCCATAAAACTGATTCTATTATTTCTGTAAGCGTGCGCAAGACATCAGAAGGAAAGGGAGCCTCAGTGGCAGCAGGAGTAGAAACTGAAGTTGCCTCGACAACGTCGACAGAGATGACGACAGCTGTTTAA
Protein Sequence
MCFLCTQCTDYDNDIIRFGTPEAESLDINQIIEKHFWLRTKDIDGNICGTCWDQLYAFHNFYTKVEQAHAKLLQNINETISTYEAEVIAEAALQVEVNVNLIKQESQITTSVAAAVKRRRGRPRKQLAIETATAIDSNESNAVQEQIDSNEIKIEIPQSKVFYDEDDQSTSDYTKQSEIESEYAINEPRQNKRKRTIKKRRIKLKVDSKLKKASVNNVRKSEELNKYIKEHFKVMCPVCNVPMDDFSEMMAHTRKEHNQRGYAMCCNRKFPDRGVLVDHLQRHQNPELFKCDICHSVVSQRTTLELHKRMHEIKERGYLYQCEHCSKSFYSSANYKRHKLVHIPREQWNVPCTSCSKVFANEMLMKEHVKLVHLKKFNKICDVCGKSIRGREVLARHMAEHSGAPQKLLQCHLCESTLTSKPGLARHIKMMHTAENLQPIECEICLKISPSLQAHQRHIKYTHNTARTHQCTMCEKAFKRPTELREHMTTHTGEVLYTCPHCPKTFHSNANMHAHRKKKHFKEWQEYHQQHQARHRKADTIISVSARKTTKSTTDTVATGAEVEVASTTSAEKTTAECELETKDVDGHICGTCWNQLYAFHNFYTRVEQAHTKLLQNINETISTYEAEVFAEAALQVEINVNVLKQESEFTDSVAAGVKRRRGRPRKQLPIETATAIDNNEFNAVKEHIDSQRNTEYPQGHLNIDDVFDDEDDQSQTDYIPQSEIESESAKDNDKPKQNKRKRTIRKGRTKLKVVSKLKKPNGNDVKKTEDLNEFIKKHFKVHCPYCNVPLGDFTELVAHSRKEHQQRGYVKCCNRKLRDRGELVDHLQRHQNPEMFKCDICHSVLGQRSTLEMHKRMHEIKERGYLYQCEHCSKSFYSSANYKRHKLVHIPREQWNVPCTSCSKVFANEMLMKEHVKLVHLKKFNKICDVCGKSIRGREALARHMAEHSGAPQKLLQCHLCESTLTTKPGLARHIKMMHTAENRQPMKCKICSKISPSLQGHKTHMKYSHNTARRHQCSMCEKAFKRPTELREHMTTHTGEVLYTCPHCPKTFNSNANMFVHRKKMHFKEWQEYHQSRLHKTDSIISVSVRKTSEGKGASVAAGVETEVASTTSTEMTTAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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