Spal014862.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- srp
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000004.1:8675306-8686194[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2 1e+04 -3.7 0.4 1 4 389 392 389 396 0.82 2 2 9.8e-19 3e-15 55.5 2.0 1 35 470 503 470 504 0.97
Sequence Information
- Coding Sequence
- ATGACAAAAACAAGCAAAACAAAAGAAAAGGATAAAAGTAGTAGTACTGCAATGCCGCGTGTGCAAAGCAATTTACTGACGAGTGCTGCCAAAATGAAGATCACCAAAGCTCTGGCCAATACCAAGAAGCAAGCAGTTCAAAAAGGCTCAGCAACAGGATCAAATGCAGCGGTCGCCCACACAGCATTAGCAGCGACAACAACAGCATACATTCAACAGGCTGTCGTTGTGAAAGAGACGGCAATAGCGGCGGTGCAGGAGAACGGCGACGCTGCGCACAAGCAGTCAGCAGCGACGCCGACGTCGCTGTCGCCGTCAACGTCACCATCGCCGTCGCCGCTTGCCACAGCGAATTTATCGTCGACATTTGAGTCGAAGGCTCATACATCAGTTGCCAGCGAAACACCAAAGCAAACGGTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGTGACGTCACAAACAAAATAATTGCAGACGAAACGGCTAACAATAACAATCCAGATAAAGTCGAGCCCAAAACCGAAAGCGAAACGAAGCTAGAGCCAGCAACAACAACAACCACAACAACATCGGAGAGCGATAAATATTACAAAATCGTTGATAAGTGCAAAAACGATGGCTATGGTTCACCAAAGAGCAGTCACAGTGGTGGCAACGGCGGTGGTGCAGGTGGTGGTGGCACCTTGCCAGCCTTTCAACGCATTGCACCCACCAGCACTGGTGCTGGCTATGGTAACGGCGTAACCAATGGATCTGTTGGCACTGTTGCCGAACGTGCTGGCTACGCATCGCTGGCCAATTATCGCACTCACGGTGATGCCTGGTCTGGACACTTTGAGCCAATTGGCTACGCGCCCACCGCCAGCAGCCAGGGGCAGTTGGGTGGTGGTGCAGGCGGTGGTGGTGCAGCGGTCACAAATGTGATACGCAATGGACGTGTTGTGGCCGCAGCTGCTGCAGCCGCTGCCAATGCTGTCGATGGTGCCAATGGCAATGCTGTCGATCCAGCACGATCCTTTCTCTCCGCATCGGCATCGCTAACAGCAACATTGCTCGATGCCGATTTTTTCACTGAGGGGCGAGAATGTGTCAATTGTGTGGCCGCTGAATCAGGCGGGGATTTCTATAAGACCTTCCCATTTAATGTGACCACCGGTAGCCGCAGTAAGGCCACAACAAATGCCACAAGCGCTGCCGGCGGTTCCGCAGGCGCAGGCTCAACGTCAGCGACAACAACGTCGTCTGCAGTGACATCAACGGCGCTCGACGAGCACGTTAGTCGCGCCAATTCGAGACGCTTGAGCGCCTCGAGACGTGCTGGCATGTCCTGTTCCAACTGCCAGACAAGCTATACATCGCTGTGGCGTCGCAATCCTGGCGGCGAGCCCGTCTGCAATGCCTGCGGCCTCTACTTTAAGCTGCACAATGTGGTGCGTCCACTGACCATGAAGAAGGACACTATACAGAAACGCAAACGTAAACCAAAGGGCACCAAGAGTGAAAAGTCAAAGAAATCGATGCGTGCTTCCCAAACGGCTTCACTGGTTGCCACAAATGCCAACAATGCGTGCCACACTGTGGGTGGCATGCAACTGGATAGCCATGGTCAACAAATGGATGTCAATGATGGTAGGTTTTTCGATAAAATTTAA
- Protein Sequence
- MTKTSKTKEKDKSSSTAMPRVQSNLLTSAAKMKITKALANTKKQAVQKGSATGSNAAVAHTALAATTTAYIQQAVVVKETAIAAVQENGDAAHKQSAATPTSLSPSTSPSPSPLATANLSSTFESKAHTSVASETPKQTVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCDVTNKIIADETANNNNPDKVEPKTESETKLEPATTTTTTTSESDKYYKIVDKCKNDGYGSPKSSHSGGNGGGAGGGGTLPAFQRIAPTSTGAGYGNGVTNGSVGTVAERAGYASLANYRTHGDAWSGHFEPIGYAPTASSQGQLGGGAGGGGAAVTNVIRNGRVVAAAAAAAANAVDGANGNAVDPARSFLSASASLTATLLDADFFTEGRECVNCVAAESGGDFYKTFPFNVTTGSRSKATTNATSAAGGSAGAGSTSATTTSSAVTSTALDEHVSRANSRRLSASRRAGMSCSNCQTSYTSLWRRNPGGEPVCNACGLYFKLHNVVRPLTMKKDTIQKRKRKPKGTKSEKSKKSMRASQTASLVATNANNACHTVGGMQLDSHGQQMDVNDGRFFDKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -