Spal006929.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- ZFY
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000233.1:1907839-1920624[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.3 3.2e+02 2.2 2.4 3 23 300 322 298 322 0.92 2 14 0.49 36 5.1 0.6 3 22 465 484 463 487 0.90 3 14 0.094 6.9 7.4 0.5 2 23 509 531 508 531 0.94 4 14 0.045 3.3 8.4 0.6 1 23 548 571 548 571 0.95 5 14 0.16 11 6.7 0.2 1 21 576 596 576 600 0.91 6 14 3 2.2e+02 2.7 0.0 2 23 652 674 652 674 0.92 7 14 0.035 2.5 8.8 0.1 1 21 679 699 679 700 0.93 8 14 1.4 1e+02 3.7 2.1 2 23 725 746 724 746 0.92 9 14 0.00056 0.042 14.4 2.0 2 23 759 779 758 779 0.97 10 14 1.3e-05 0.00095 19.5 2.9 1 23 785 808 785 808 0.98 11 14 0.00037 0.027 14.9 0.5 1 23 824 846 824 846 0.98 12 14 0.66 49 4.7 0.1 1 23 853 877 853 877 0.95 13 14 0.13 9.4 7.0 3.5 1 23 882 906 882 906 0.96 14 14 0.0017 0.12 12.9 3.3 1 20 947 966 947 968 0.95
Sequence Information
- Coding Sequence
- ATGAATACCGAATCCGATGATCTAGACGATTCACATTTGTGCATCAAATGCAATGCAACAATTGTGGGTCTCACCAAGTATATTGAGCATCGTAAACAGAATTGCCTTGAAAACAACTCGCATCCAAGAAAGCAAGTTTTGGTCACTCCACCAACAGCATCATCAGCAACAGCAACACCCAGCGATCAGTCGTCGCCGCCAATTATAAGTCGCACGAACTTGGATCACAGCTATGATGGCTTTCACTTTGCCGAGCCAGAGACTCCGAGCAGTTATCTGCGCAAGACAACGGCCAGTCATGGCGGCAAGACCTCGAAATCCCTAACGGAAGCGTATGATCCCACGTATGATCTGGGTGCTGATCTGTTCTTCTCATCGCTGCAGCTGCAAAGTGTTTCGACGGGCGGGAAAACAGGTTCACGTCCGGAACGTTCCATTAAGGAGGAACAGGGCTGGCATACGTCCAACAACTGTTCCGATCCGCTGTTGAAAGCGGTGCGGGACCACGAGGTTTCCCACTTTAAGCCACTGAAATTCGAACACTCGCCGGAGACAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGACGACATTCCCCACCCACAGTGCCTGTCACACACACAGGTGGCAAGTGGAAACCGGAGCATCGTCCTCAGTTGCAGCATACGCAGCATCTGGAACGCATCTCGCCCAGCTGGGATGAACCTCCCGAGGAGCCGCATGATCATCCTCCCGCTGAACACACGCATGGCAAATGGGTTCCAGGCAGCAAACAGCTGGAGTACCGTGAGAACATTGATCTGACCAAGTTGCTGCAACCCGGCGTCAGCTTCTGGTGCAACATCTGTTGTCGCCGCCTCAAATCGCGCCTCAACTACGAGCAACATTTGCGCAGCGCCTATCATCAGCGACGTGCCGACGCCGAGCGTCAACTGGAACAGGCCAATCTCGAGAGCGCTAATCTTACTCTATCCAAGGACTTTACACAGGAGACACCACCGCCGGCGGCACCAGAGCCACAGGCTCGTCGTCGTCGTCGTCGCGCTCATCAATTGCGCTGTGAACTCTGTCGTCATAGCATGGCTCGTCATCTGATAGGCAAGCACTTAATCTCCCACTATCACTATCGACGCCTCCAGCAGCAGCAAACGCAGCAGCGACGTCAGGACTCTCTGCACGACATCCTCGAGCACATGGGCAGCATTGTGCGACAGGCGCCATTCCAATGTCTGCCCTGTCGCTTCTATGCCAATACAGAGGAAACTTTTCAGGCACATTGGCGCTCTGCATCACATGTGAAGCTAACAGATCGTCCAGGTGGCGATTTCTGGTGCAGCTATTGTCAGTTTGAGTGTGCGAGCAATGAGGAGATGTGGCAACATTTATTGAGCGCCAGCCACAAGGAAGTGCTCTTTGCCATCAATCGTTCGGTGCCCGTTTGCATTGCCCAGCGTCGTCCACTGAGCTGTTCCAGCTGCAACGCCAGCTTCCTGTACAATGCACAGCTGAGGCGTCACTTTGCCACGGAGCATGTGGGTTTGGTGGCAACGGGCAGTGCCTCTGATGACTATCAGTGTCGCTTTCGTTGTGGCATCTGTGGTGTGGCACAGCGATCTCGAGTTGCACTGCAGCGCCACGAGAAGCACCAACATCGTTTGGCCAAATACTATTGTGCCGTTTGCCGGCTGGAGTTTGAGACGCCGCAGGAGGCGCGTCGCCATCGCAGCCTGATGCAACACAAGCGACGAGCGAACCGTCAGCTAAAACGCAAGTGCAACAGCAGCAGCAGCATTAATCAGCCGGATCGGGAGATACAAGACTTGCTGCACGTGGTGTTGGAGGAACAGCAGCAAGCACCACCAGCCTCCAAGCGTCGCCGCCTGGCCAAGAACCAATGTGCTAGCTGCTCGCTAAGCTTTGATATACCCCAGGCACTTGTCGAGCATCGTCTGGAAATGCATCCCACGGACAACCATGCTTGTCCCAGCTGCGGCAGTAGCTTTCAATCTGCCCAAGCGCTGGGCAGACACACACGCAGCTGTCAGCCCAAAGCTTCCACCTCAGCAGCAGCAGCAGCAGCTGCCACACCTGCTGTTGATCCTGTTACCTTAAAGTGTGACCAATGCAGCTTTACATCTCAATACCAATCGGATCTGCTCTATCATCGTTTCTTTCATTCGAATGGCGGACCAATTGGCAAGAGCGATCTGCTCCAATGTTCATTGTGTCCCAAGCTATTCCGCAAGCATTCGTTGCGTGCTCATCTGCGCATTCATACAGGTGAAAGGATATTCGAGTGCAACGTTTGCCTAACAAAGTTCGCCCGAAAACATAACCTCACAAATCACATTAAAACCATGCACGATAAGACGAGGAAAGTTTCGAAAGCAACGCAGGTTTCTCCCAAGTTTCAATGTGGCACGTGTGGCAAAATCTTAGCAAAAAAATATTCTCTTAAATTACATGAGATGAGCCATGCCGAGGTGGAACGTCAATTCCGTTGCAATTTGGAGGATTGTCAATATGCGGGTTTAACACTGGAAGCTCTGAAAGCCCATCTCAACTCACATGCGGAAGGAAAACACAAATGTGAATACGAAAACTGTCTATATGTGGGCAAAAGTGCGATGCACCTAAAGAGACACCTCAAGTCGCATGTGACCGAAAAGGAGCTGAATGATGGCGACAAATGGTTTTCGTGCGATCAATGTGAGTTCCGGGCCAGGTGTAGGACACATTTGACGCGGCACAAGCGTGGTCATACGGGCGAGAAGCCGCATCAGTGTCCACATTGTGAGTTTCAGTGCAGCAGCTTGGATAATCTACGCAAACACATTGTCAAAACGACCAAACATCCCGGCAAGTTCATCTACGAGTGTTCAGCCTGTAACACCTTCAAGAGCAACAGCTACAAGGAATACCAACAACATTTAAAAGGGCACAAGAAATAA
- Protein Sequence
- MNTESDDLDDSHLCIKCNATIVGLTKYIEHRKQNCLENNSHPRKQVLVTPPTASSATATPSDQSSPPIISRTNLDHSYDGFHFAEPETPSSYLRKTTASHGGKTSKSLTEAYDPTYDLGADLFFSSLQLQSVSTGGKTGSRPERSIKEEQGWHTSNNCSDPLLKAVRDHEVSHFKPLKFEHSPETSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRHSPPTVPVTHTGGKWKPEHRPQLQHTQHLERISPSWDEPPEEPHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLLQPGVSFWCNICCRRLKSRLNYEQHLRSAYHQRRADAERQLEQANLESANLTLSKDFTQETPPPAAPEPQARRRRRRAHQLRCELCRHSMARHLIGKHLISHYHYRRLQQQQTQQRRQDSLHDILEHMGSIVRQAPFQCLPCRFYANTEETFQAHWRSASHVKLTDRPGGDFWCSYCQFECASNEEMWQHLLSASHKEVLFAINRSVPVCIAQRRPLSCSSCNASFLYNAQLRRHFATEHVGLVATGSASDDYQCRFRCGICGVAQRSRVALQRHEKHQHRLAKYYCAVCRLEFETPQEARRHRSLMQHKRRANRQLKRKCNSSSSINQPDREIQDLLHVVLEEQQQAPPASKRRRLAKNQCASCSLSFDIPQALVEHRLEMHPTDNHACPSCGSSFQSAQALGRHTRSCQPKASTSAAAAAAATPAVDPVTLKCDQCSFTSQYQSDLLYHRFFHSNGGPIGKSDLLQCSLCPKLFRKHSLRAHLRIHTGERIFECNVCLTKFARKHNLTNHIKTMHDKTRKVSKATQVSPKFQCGTCGKILAKKYSLKLHEMSHAEVERQFRCNLEDCQYAGLTLEALKAHLNSHAEGKHKCEYENCLYVGKSAMHLKRHLKSHVTEKELNDGDKWFSCDQCEFRARCRTHLTRHKRGHTGEKPHQCPHCEFQCSSLDNLRKHIVKTTKHPGKFIYECSACNTFKSNSYKEYQQHLKGHKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -