Basic Information

Insect: Scaptomyza pallida
Gene Symbol: -
Assembly: GCA_018152965.1
Location: JAECXP010000063.1:3644589-3647467[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0018 0.14 12.8 5.1 1 23 622 644 622 644 0.98

2 5 1.4e-05 0.001 19.5 0.4 2 23 657 678 657 678 0.98

3 5 0.00019 0.014 15.9 1.4 2 23 686 707 686 707 0.97

4 5 0.0006 0.044 14.3 0.9 1 23 712 737 712 737 0.92

5 5 0.2 15 6.4 0.1 1 23 745 769 745 769 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0018	0.14	12.8	5.1	1	23	622	644	622	644	0.98
2	5	1.4e-05	0.001	19.5	0.4	2	23	657	678	657	678	0.98
3	5	0.00019	0.014	15.9	1.4	2	23	686	707	686	707	0.97
4	5	0.0006	0.044	14.3	0.9	1	23	712	737	712	737	0.92
5	5	0.2	15	6.4	0.1	1	23	745	769	745	769	0.90

Sequence Information

Coding Sequence: ATGATGGATCGCAAGAAAGTGCTTGAATTGGACAAAATCTGCCGCCTATGTATATCGGAACGCAAGGAAATGCGTCCACTATTCAGTGAAAAAGTGCCCGAAATGCTAATGGACTGCACCAGTGTGCGGGTGGAGCCCACCGAGGGCTGGCCGGATAAAATTTGTGTACAGTGCGTTCACGCCGTCAGCAGAAATCATGCATTCAAGACGCTCGTCGAGCGCAGCGACAAGGAACTGCGCGAATACATCAAGAGCCTAACGCCCAAACCCAAATTTAAGCCACTGTTGCGAAAGGGCACGTCACGCCAACCAAAAAAACAGCAAGAGGCAGCCCAACTGTTGCCCGAACCAGCACCACCCCCACCACCACTGATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCAATGGCCAGTTCATCACCACACAAATTGTGACGCCGCAGCTGGCGCAGATCATAAGCAGCCCGCAGACAAATACGAATGCGACGCAAGCGCAGGCACAATTTCTGCCGCAGTTGCTACAGGCGCCCAATGGTCAAACGCTGCAAATTGTCCAACAGCCAAATGGCACACAGACGCTACAGCTTGTGCAGCTTGTGCCGCAGCGGACAATGGCGCCAGCGCCAACGACAACGACACAAGAGATGTGTACGACAAATAATGGTGGCGGTGGCTCTCTGGCCGATGCGGATGTTCAATTGTTGGACGATGGTGAAATGGATGATGAGGAGCTGGAGGAGGTGTATGAGCAGCTGGATAGCAAGGGTCATACATTCGAGACGATCGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAGTGCTTATCGATGAGGAGCTTACCCACAGTGACACCCAGGACCAGGAACAAGAGCAAGATCTCGATCACGATCACGAACACGAACAGGATATGCAGGAGGAGGAGCAAGAGCATGACGAGTACTTTGATGAGCAACTGTTGCAGCACGAGGATGGCATTAAGCCAGAGGATGAAGACGATGATAATTTCATTATTGAAGAAATCCAACTCGACGACGAGGACATGCTGGACGACGGCGAAGGCGAAATGGAGGGCGATGTCGATGATATGACGCCCGTGGATGATTGTGAGTATATAACCGATGATCCGGAGCACGGTGGACTCGGCGCTGATGTCGATGATGAGCTGCACTATGCCATTATGGAACCGCCCGATGGCGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATAATATATCGCTGGAGAATGCTGTCGTTGAGTTTAGACAGGATTCGTTAACACTGCACGTGAGCAGTACGCCCAGTCCCACGCCCAGTACGGCAAAACGTGCGCGACGCAACAATAACAACAACAATAATAATAACAACAACCAGCAACAATTAATTGAACAACCTTGTAATCATCATCAGCACAGTCCACCAACAATTAGCAGCAAATTGGCAGCAGCGAATTCGCGGCAGTTGGTGCAAACGGCGTCAGTAATTGCGGCAGCGGGCGCGGATGATAATTATGAGATTGATGCGAATCTGGTAACCGAATTCATACGACAACATACATCACCCTTAGGCTCCGGCCGTTACATTTGTCATCTGTGCAGCACCGAGTTCCGGCAATTCAAGGGTCTACAGAATCATATGCATTCGCACACGAACTGGATACGCGCTAATTGCAAGAAGCAGCCGCAATGCGAGATCTGCTTGAAGAGCTTCAAGGGACCGGGCATGCTGCGCATGCACATGAAGACGCACGATGCCGAAACAAGTACACCCGTGTGCAATATATGTAATCGCACATTCAAGTCCAAGGCGATACTCTATCGGCATAGGCAGACGCATCAGCAGCGTGCGTATTGCTGTGGCGTTGGCAATTGCCGCAAGAATTTCTCGAATGCAGCGAATCTGCGCTGGCATGTGGAACGCAAGCATCCGGATTGTGTGGAGCCCTTCTACAAATGTGGTGAATGCTCCACGCTATACGATAATGTTGTGGGCCTGCAACAGCATGTGGAGACAACGGATCATGGCAGCAATGTCGTCAGCGAACAATTGATTGCCACCGGTTCGAATGCAGCGTTCAGTGGTGCCGTTAGCATTGTTAGCAATGGAACGGATATGTCCGATATGACCAGCATGATTGCAGCCGCACCGAATGCATTGAGCGGCAATGGCGCGGGGCCAGGTGATACGCATGCTGTTGTTGTGGGTTCATCGGGTGAAATGTATTTTGTGACGCAGGCGTAG
Protein Sequence: MMDRKKVLELDKICRLCISERKEMRPLFSEKVPEMLMDCTSVRVEPTEGWPDKICVQCVHAVSRNHAFKTLVERSDKELREYIKSLTPKPKFKPLLRKGTSRQPKKQQEAAQLLPEPAPPPPPLINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPNGQFITTQIVTPQLAQIISSPQTNTNATQAQAQFLPQLLQAPNGQTLQIVQQPNGTQTLQLVQLVPQRTMAPAPTTTTQEMCTTNNGGGGSLADADVQLLDDGEMDDEELEEVYEQLDSKGHTFETIVLXXXXXXXXXXXXXXXXXXXXXXXXXXXQVLIDEELTHSDTQDQEQEQDLDHDHEHEQDMQEEEQEHDEYFDEQLLQHEDGIKPEDEDDDNFIIEEIQLDDEDMLDDGEGEMEGDVDDMTPVDDCEYITDDPEHGGLGADVDDELHYAIMEPPDGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHNISLENAVVEFRQDSLTLHVSSTPSPTPSTAKRARRNNNNNNNNNNNQQQLIEQPCNHHQHSPPTISSKLAAANSRQLVQTASVIAAAGADDNYEIDANLVTEFIRQHTSPLGSGRYICHLCSTEFRQFKGLQNHMHSHTNWIRANCKKQPQCEICLKSFKGPGMLRMHMKTHDAETSTPVCNICNRTFKSKAILYRHRQTHQQRAYCCGVGNCRKNFSNAANLRWHVERKHPDCVEPFYKCGECSTLYDNVVGLQQHVETTDHGSNVVSEQLIATGSNAAFSGAVSIVSNGTDMSDMTSMIAAAPNALSGNGAGPGDTHAVVVGSSGEMYFVTQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322996;
90% Identity: -
80% Identity: -