Spal002864.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- -
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000008.1:1126921-1134080[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.6 6.3e+02 1.2 0.3 2 23 635 659 634 659 0.69 2 9 0.0015 0.11 13.1 0.9 1 23 665 688 665 688 0.96 3 9 0.26 19 6.0 0.2 1 17 693 709 693 714 0.86 4 9 0.00015 0.011 16.2 0.6 3 23 972 993 970 993 0.93 5 9 0.001 0.074 13.6 0.6 2 23 1002 1023 1001 1023 0.97 6 9 0.21 15 6.3 0.3 1 23 1030 1053 1030 1053 0.95 7 9 1.2e-05 0.00086 19.7 1.4 1 23 1059 1081 1059 1081 0.97 8 9 4.8e-05 0.0035 17.7 0.3 2 23 1087 1108 1086 1108 0.97 9 9 0.00018 0.014 15.9 6.6 1 23 1114 1136 1114 1136 0.99
Sequence Information
- Coding Sequence
- ATGATTGCCAAATTTCGTCGACGTTGTGTGCGCGTCCAGCAGCGTCTACAAGAACAAGTCCAAGGCTTTATACCATTCAAGTCCAAGCGAGAGCAGCAAAAAACACAAACACTACAGTCACAGCCAGAGCCACAGCCAACAACAGCTTCGTCGATGGCAAATGAAACGCCTGCAGGCGATTACATACATCTGCCGGTGACACAAATGGAGCGCAAGCGTCGCCAGGTGCCAAACACAGACTTCGAGGTGCTGTTGCCACCAAAGCAAGCCAAGAAGACGACCGATGTTGCCGATGCAGATGCAAATGTAAATGCAAACGCAGACGCATCCGCACCATCATCAGTGATGCCGCTCAGGCTGCGACGTTATCGCCTTTCCTCCTTGCCAGCATGCAGCACAGAGGATGTTGTTGCTTCATTTATAACAAAAACAGCGGGGGGCGCAACAAGTGATTGTCGTCTGAGTGAGCTAAAACAATGTGCATCGGCGGCAAGATCAGCATCGCCATGGAGAACAAAAGCGGCACGCAAACAGCTATCCGAAACGTGTTCGCCAACGTCGACAGAATCATCCTATTCGACCGATAACAACAAATCGTCAGATCTCGAATCGATTAAAACAGCACAAACACCAAATTCGCAATCATCTGGCGAACATTTAAGTGATTTGTCGGTTCCTCCATGTCTTGGCTTTGACAATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACAACTGGCGATAATCCAAAGACAACACAAACCAATAATATTAATCTTAAATTCCCACCAACGCGCAGCTCGCCAAGATTGCGGCGCTTATACAAAAAGAAGGAAGATGAGCTAAAAGAAAACATGCCAAATAGCGGTTCCGATGAGGAACCAAACAGCAGCAGCAGCAGCGGCAGCAGCAACACCAGCACGACTGAAAGTCCAGAGTCAGAGCAGGAGGAGGAGGAGAATGATCTCTTAAAATCAGACAAAGTAAAACAGCAGCAGCTGGATTCTGCCTCTGCCGACAACTTATCGGCAGCTAAAGAAATCGAAAGCATATCAAAGGATTTGATCAAAGTGGTTGCTGATGCGACACAAGATAACCAATCTGCGGTGGGACCAGTGCAACATGAGGAGCTAAGCTCATCCAATGCAGTTCCAGAACGACAACAATCGCTTACACCCGAAGTGCCGGCCGTTGAATGCGAAGTCGAGGTGGGTCCAACGCAAGAAGTGGTGGTGCCGCCAACGACAGAGTTAATTGTGAGCATACCGCTAGATGCGCTCGGCGAGGAGCTGCAACGTAAGCTATGCAGCGAGGCCAACATGGAGCCATTAAGCGATGGTGAGTCGAAGGAAGCTGGCGAATCCGATGATGTGAATAACAATGGGAATGCCGAGAATTTTTGCCAGAGTGCTACAGCAGATAGCTTCAATGCTGCTGTAGCACTCGCAACTAAACAAATTGAAGCTGAACCAAATGGAGGAGGAGGCGGAGGAACCGTCGACCAGAATAATATAGAATCTTTAGATAACCCGAATTCGAGAAACATTGTGAGAAAACACTTAAACCGCATGATGAAACCGCCGTTGGACAGGACGGAACTGGCGGTGGCCAATCATCAGCTGGAAGTGGAAATGAATGATAGAGAGAATACACTACATGGCATACTCAATGAGATGCAGGATGAGCATCTCTATACGCCCGTCTGCACGCCCATCATCGATGAGTTCCTAACGCCAGCCGATTATGCGCCACCAACGCCAGCATCGCCCTGTTTCTATGAACCAACAGTGGAGCAACTGCAGCCGAACATTCAACAACAACAACACAATGTCGAGATGCTGCCGCGTCAACGTGGTCGTCCACCCATGCTAAAGTGCCGCTACTGCCAGAGGGGTCCACGCTTCTCAAGCAATCTGGAGTACAGTAATCACATCATTGAGCTTCATCCAGCCTTTGCGCCATTCACCTGCCCCCACTGCCCCCAGGCCTTTGCCGGTCGCAGCAAACGCAATCAGCACATTCTCAATAGCCACATGGTGCAGAAGTTTCAGTGTGGGCAATGCTCACAAATGTTTCCATCGCAGCGTGCGCTTGATTTTCATTTGCAGCGCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACTTCACATATGCTGGTTGTGGATTCACAAGCAAATCTAACCCGGCCACGCAGAACGCGCATACTGTGCTGTCCAGACTGCGAGGACTGTTCAACGTCCGGTGGACACAGTCATGGCAGTGTTAAATCTTATGAGGAGCTTAATACATTGCAACCGCCACCGATGTCGTTGACGCCGCCTTCAACAATTGCATCGTTGCCGTCGCCGCAGCCGCTGCCTGCACCACATATTACTTTGCCGTCGCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTCGCCTTCACCCTCCTCATCGCCATCATCATCGACGATGCTGGAGACGACGAGCCCAACACAAATGCAGCTGGCCAAACTGCATGGCAGTCATCTGTGTGTTATCTGTGACAAGACCTTTACGAACATCATAGCTCTGCGCAAGCATCAGCAATTGGCCCATGATTCGCAGACAACGATGCCGTGGGTGTGTTCGATATGCAAGCGCGGCTTTCGGAAACGCATCGACATGGATAATCATATGAAATCGCATGAGCCCAAGGGTCGTCCCTATGAGTGCAATGAGTGCCTGGTGCGTTTTCCCGAATTCAATCAGCTGGCGTTGCACAAGTTCACCGTGCACGAGTTGATTAAGCCGCATACCTGCGACGAGTGTGGTAAACAATTTGGTACGGAGAGCGCCTTGAAGACGCACATTAAATTTCATGGTGTGGGCGGATTGGAGTGCAAAGAATGCGATGCTGCATTCGCTTATATTAAAGATTTGCGCAAACACCGGCGCACCCACAACTGTGACTTATTTTACAAATGCGATCATTGTCCACGCACTTTTCAACATTTTACGAGCTATCGTGCACATATGAATACCCACCTGCCGTTGGGCGTATTCCTGAACGACAAGATGCCCAGCAGTGTATGCATCAAAACCGAGAATCCCACAAACATGGACGAATCGCAGATGCCATTGACGCCGCTAAGCAATTGCAATGGCAATAGTGGCAGCAATAGTGGCCTAGATGATTGTCCCGGCTCTGTGGAAATGGTGGTGGAGAGTAGTATGTCAGCACCAACGTTGGACATGATCGTGGAAACGCCATAA
- Protein Sequence
- MIAKFRRRCVRVQQRLQEQVQGFIPFKSKREQQKTQTLQSQPEPQPTTASSMANETPAGDYIHLPVTQMERKRRQVPNTDFEVLLPPKQAKKTTDVADADANVNANADASAPSSVMPLRLRRYRLSSLPACSTEDVVASFITKTAGGATSDCRLSELKQCASAARSASPWRTKAARKQLSETCSPTSTESSYSTDNNKSSDLESIKTAQTPNSQSSGEHLSDLSVPPCLGFDNDXXXXXXXXXXXXXXXXXXXTTTGDNPKTTQTNNINLKFPPTRSSPRLRRLYKKKEDELKENMPNSGSDEEPNSSSSSGSSNTSTTESPESEQEEEENDLLKSDKVKQQQLDSASADNLSAAKEIESISKDLIKVVADATQDNQSAVGPVQHEELSSSNAVPERQQSLTPEVPAVECEVEVGPTQEVVVPPTTELIVSIPLDALGEELQRKLCSEANMEPLSDGESKEAGESDDVNNNGNAENFCQSATADSFNAAVALATKQIEAEPNGGGGGGTVDQNNIESLDNPNSRNIVRKHLNRMMKPPLDRTELAVANHQLEVEMNDRENTLHGILNEMQDEHLYTPVCTPIIDEFLTPADYAPPTPASPCFYEPTVEQLQPNIQQQQHNVEMLPRQRGRPPMLKCRYCQRGPRFSSNLEYSNHIIELHPAFAPFTCPHCPQAFAGRSKRNQHILNSHMVQKFQCGQCSQMFPSQRALDFHLQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSHMLVVDSQANLTRPRRTRILCCPDCEDCSTSGGHSHGSVKSYEELNTLQPPPMSLTPPSTIASLPSPQPLPAPHITLPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSPSPSSSPSSSTMLETTSPTQMQLAKLHGSHLCVICDKTFTNIIALRKHQQLAHDSQTTMPWVCSICKRGFRKRIDMDNHMKSHEPKGRPYECNECLVRFPEFNQLALHKFTVHELIKPHTCDECGKQFGTESALKTHIKFHGVGGLECKECDAAFAYIKDLRKHRRTHNCDLFYKCDHCPRTFQHFTSYRAHMNTHLPLGVFLNDKMPSSVCIKTENPTNMDESQMPLTPLSNCNGNSGSNSGLDDCPGSVEMVVESSMSAPTLDMIVETP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -