Spal009187.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- -
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000005.1:4929748-4934423[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.057 4.2 8.1 3.2 3 23 361 382 359 382 0.96 2 16 0.045 3.4 8.4 1.8 2 23 425 446 425 446 0.93 3 16 5.5 4.1e+02 1.8 3.0 2 17 457 472 456 483 0.75 4 16 0.023 1.7 9.3 0.9 1 23 514 536 514 536 0.95 5 16 0.0045 0.33 11.6 0.1 1 23 544 567 544 567 0.96 6 16 1.5e-05 0.0011 19.3 0.2 2 23 572 593 571 593 0.97 7 16 0.00036 0.026 15.0 0.3 1 22 641 662 641 665 0.91 8 16 0.19 14 6.4 0.9 3 21 672 690 672 691 0.90 9 16 0.0014 0.1 13.1 0.4 1 23 710 735 710 735 0.96 10 16 0.011 0.83 10.3 1.4 2 23 751 773 750 773 0.93 11 16 0.065 4.8 7.9 0.8 2 23 779 801 778 801 0.92 12 16 0.0022 0.16 12.5 0.2 2 23 805 827 804 827 0.96 13 16 3.1e-05 0.0023 18.3 2.5 1 23 833 855 833 855 0.98 14 16 0.0011 0.079 13.5 0.8 1 23 859 882 859 882 0.96 15 16 2.7e-05 0.002 18.5 0.5 1 23 888 911 888 911 0.97 16 16 0.016 1.2 9.8 1.3 1 23 915 943 915 943 0.88
Sequence Information
- Coding Sequence
- ATGTCGGAAATCGTAAAGAATACCAAAAATCTACCTAGCTGCCTGCATTGCAGAGCATGCAATTCAAAATTACAGTATCAAGAGATATTCGATAAAGTGGGCATTGAAATAGGCCTTGCAAAACTAGTTGCAAAGTATTTTCAAATAAATGTTAAGCCAGACACTGAGAAGCCGCAGCGGCTATGTGTGGAGTGTGTGAGTGCACTTATACGTTTTTTCGATATCGACGAACTTCAAAAGGTGCAAGATGCTGCAAATGCTGCAAAAAAAAACCATAAAGATGCAAAGATTGAAACACCAGTGTCGCAGGCAACTGCGGCTGTCACCAAAAACAATGCAATACTTCCTGTCAAAAAGCAGACAGCTGCATCGAAAACTGCACAAACTCCGACAAAAGTCTTAGCAGCATCACCGATAAAGCAAGAAACCCCAACGTCGGCTTCTCCTGCTGTTATCATTGTTCCCTCAATCTCTGATGTAGCAAAGGCGTCGTCAGAATCTGTTGTTACTCGCGTCACCAGATCCAAAAACGCTCCACCAAAAAGATTGCCTATCAAAGCAATAGAAGCAGTCAAAGCAAGTGTTGATACAGTCGCCAAACGGCGACGATCCAAAGAAGTGCCTCAGGGTGATCAGGAGCAGATAAGCGCGCTAATTCGTGATATTCTAGACGATGAGGAGACACCAGCGGATACTAAACTGGTGGAAGCTACAGCTACAGTAAGTCAGCTAGAGAAACATATAGCTGAAGAACAGCAGCAGCTGCAGTCAAAGGAGGCTACGGCGAAAGAACATCCTTTACCCGGAGAGGAAGATGACAATAATGAGCTCGAATTTCTGGTTGAGCGGGAAGATAACTCCTCGGAACTGGGTGTGCGACATTTCAAAGTGGAGCAAAAAATCAAACGTGATGCATCACAGTCGCAAAATGAAAGCCAAAGCGAGGACGAATCTTTTAAAGTGGAACCATTTAACTTTGTGCTTATCAAAGAATCTGATAACATTGGTGACTTGTACGAGTATTTGGCCACTGTGGTAAAGACTTGCTTTGAGACTTTGACTTTTGACTGGGACACTGATTGCCGGCATTGCTTGTTGAAGTTCACCACATATCAAAGTCTATATATTCATATGCTGAAACGGCATAAGTTGTCGGGTGAACTTTACAAATGTCCTATTGATGACTGCACGTCAGAGCTAAAAGGTGGAAAATCTTTGGCCATGCATTTGGTTGTGCTTCATGCGCCAGTTGCTGATATACCCATTTATGGCAGTTGTCCCGAGTGCAGTATGACATTTTCAAACATATTACAGTACAACAAACACTCCTGCGCGCATGTCATTAAAAAACGTCGTGGCATACGTCTATATTGTGAGATGTGCGGCTTAGAGTTTCCCTCCTGGAAGCGCTTTAATTTTCACAATCAATTTCATTTGGAGCGTCACAGACCGCGCGCCTGTTTTGTGTGCAGCTACGCGGATACAAATATTGACGATCTATTCCAACACTTGCACTATGCACACGAACCGGAAGGCACGTTCTTTTGTGATCTTTGTGATCGTTATTTTCGTGATCAAGCCATTTTAACGGAGCACAACAAATCGCACTCAAATGTCAGCAGCACTACGTACTCCTGCAACGAATGCAGTGCCAATTTCGAAACACGGGGTCGCCTCAATGGCCATCTGCGTGCGGTACATGGAAGTGTCATCAGCTGCGAGCTGTGCGGCCGCGAATTTTCCTCGGAGGCCACCTACAATGTACATATGAAAACGCATCTGATTATTGAACGCGAGGTGCGTGTGTGCAACAATTGTGGTTTGCTTAGTGAAAACAACGACAAGATTGCGTCCCATGTATCGGATGAAGAGTCGGCTTGCTTTGGCAGTGATGTATTAGTGGAGATGATGCGCGATGCTTATGTTTGTGAATTCTGCTCTGCATACTTTAAGCAGAAAAGCGATTTGCGGGCGCATCGCGCCTCAGGTGTTCATAAGGATGGCCTCTTCTGGTGTCAGCCGTGTAACAAGGACTTTGCTGACATGAAACTTTATCGTCATCATATGCGCAACTATCAGCAAATGCGCACAGACGTTGCGCATCGCAACCTAGAAATTTGTCTTTACTTCATGTGCGACTTTGAGGATTGCGATGAAGCATATATCAATTGGAATTCTCTTTACACTCACAAACGGCGAACGCATGATGCCGTTGAGAAACTGGAGCCCAAAGCAAAAGAAATTGAATGGATTTGTCAGTTTTGCCAGAAAGTGTGCCGCTCAAAAATGTCGCTATCAGTGCATGTAGCACGCAGCCACAACAACAATAATCTGGTTTGTTCGCTATGCAAATCCTCCTACAAAGATGATGAAGCTCTAAAAAAACATCACGCCTATTGGCATGAGCCAATGGAGTGCCCGTTGTGCCTAAAGGTTGTCAAAAATCGACGCAACTTTGACACTCACATGAATGTAGTGCACTCAAACAATAAGCGTTACTCGTGTAGTGAGTGCCAAAAGGGTTTCTATCACAAGAGCGAAATGGAAGCTCATCGGAGGCTACATGCCGAATCGTATAAATGTGAACAGTGCAACTTTACAACGAGGAACGAGAAATCGCTGTCGGTTCATATTATGGGACAGCACTTTAAGCGCTTTGCTTTTGAGTGCAAGGAATGCGAAAAGCGTTTCGGACGTCGACAGGGACTCTTAAATCATATGGAACGTGTACATGGCTCTAAATATACTTGTCGGGACCATTATAAAGGCGGCTGCAACAAGTCTTTTGCATCAACTATGCGTCTTAACGTGCATGTGCGTAAGGCACATAAGGGCACCATTTTGGAGTTGGCAAGCGATGAGCCATCGACATCAAAAAAACGCTGTATTCGCATTAATGCCAATACTCATATTGAGTTTATTGGTGATGCAGCTGATGGCGAGGATAACGAGAGTCAGACGAGCTCGGAGGCTTTCGAGGTGTATAGGAAATTCAAGAAAGAAGCAAAAGAACCACCAAAGAAGAGACAAAAGCAGTCTAAATAG
- Protein Sequence
- MSEIVKNTKNLPSCLHCRACNSKLQYQEIFDKVGIEIGLAKLVAKYFQINVKPDTEKPQRLCVECVSALIRFFDIDELQKVQDAANAAKKNHKDAKIETPVSQATAAVTKNNAILPVKKQTAASKTAQTPTKVLAASPIKQETPTSASPAVIIVPSISDVAKASSESVVTRVTRSKNAPPKRLPIKAIEAVKASVDTVAKRRRSKEVPQGDQEQISALIRDILDDEETPADTKLVEATATVSQLEKHIAEEQQQLQSKEATAKEHPLPGEEDDNNELEFLVEREDNSSELGVRHFKVEQKIKRDASQSQNESQSEDESFKVEPFNFVLIKESDNIGDLYEYLATVVKTCFETLTFDWDTDCRHCLLKFTTYQSLYIHMLKRHKLSGELYKCPIDDCTSELKGGKSLAMHLVVLHAPVADIPIYGSCPECSMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCSYADTNIDDLFQHLHYAHEPEGTFFCDLCDRYFRDQAILTEHNKSHSNVSSTTYSCNECSANFETRGRLNGHLRAVHGSVISCELCGREFSSEATYNVHMKTHLIIEREVRVCNNCGLLSENNDKIASHVSDEESACFGSDVLVEMMRDAYVCEFCSAYFKQKSDLRAHRASGVHKDGLFWCQPCNKDFADMKLYRHHMRNYQQMRTDVAHRNLEICLYFMCDFEDCDEAYINWNSLYTHKRRTHDAVEKLEPKAKEIEWICQFCQKVCRSKMSLSVHVARSHNNNNLVCSLCKSSYKDDEALKKHHAYWHEPMECPLCLKVVKNRRNFDTHMNVVHSNNKRYSCSECQKGFYHKSEMEAHRRLHAESYKCEQCNFTTRNEKSLSVHIMGQHFKRFAFECKECEKRFGRRQGLLNHMERVHGSKYTCRDHYKGGCNKSFASTMRLNVHVRKAHKGTILELASDEPSTSKKRCIRINANTHIEFIGDAADGEDNESQTSSEAFEVYRKFKKEAKEPPKKRQKQSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -