Spal011068.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- L
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000229.1:1156991-1164580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.9e-06 0.00073 19.9 2.9 1 23 164 186 164 186 0.98 2 18 0.34 25 5.6 6.2 1 23 192 214 192 214 0.97 3 18 1.6e-07 1.2e-05 25.5 3.2 1 23 220 242 220 242 0.99 4 18 1.2e-05 0.0009 19.6 0.4 1 23 248 270 248 270 0.99 5 18 0.16 12 6.6 0.1 2 23 344 369 343 369 0.92 6 18 0.00041 0.03 14.8 0.4 2 23 406 428 405 428 0.96 7 18 0.027 2 9.1 0.7 1 23 494 516 494 516 0.97 8 18 0.005 0.37 11.4 0.1 2 23 524 545 523 545 0.91 9 18 0.00013 0.0094 16.4 0.1 1 23 553 577 553 577 0.93 10 18 4.4 3.3e+02 2.1 0.3 2 20 583 601 582 602 0.91 11 18 5 3.7e+02 2.0 1.6 2 23 613 635 612 635 0.95 12 18 0.0025 0.18 12.4 1.1 1 23 685 708 685 708 0.97 13 18 0.0063 0.46 11.1 1.6 2 23 880 902 879 902 0.96 14 18 0.11 8.3 7.1 0.1 1 23 908 930 908 930 0.92 15 18 0.54 40 5.0 0.4 2 23 938 959 937 959 0.93 16 18 0.95 70 4.2 0.5 2 23 1057 1078 1057 1078 0.94 17 18 0.023 1.7 9.3 0.0 1 23 1088 1110 1088 1110 0.96 18 18 0.00022 0.016 15.7 1.2 1 23 1115 1137 1115 1137 0.97
Sequence Information
- Coding Sequence
- ATGATGGCCTTAAAGATGTTATATCGTGGTCCCAGTTCGCGTTTGGAGAATTTAATTGAAAAGATTCAAGCCACCAAGGAGATTACAAATAACGATATGTACAGCACGCACACCTCCTCGAGCTATTCGCCAAGCATCTCGGATGGCACACTGACACCTAATTCGATACAGCCGGCAAAGTCCGAGGAAGCCCAAACAGAAGAGTCCAAGGCGAATGGTGACAGTGCGACGACCATGGAGCAACAGGATCTGCCCAAACCAAAGCGACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCTGAAAATTGCCAACAAGCTGCGCAAAATCAATAAGGAAGCCAAATTGGCAGCAGCAGCCGCAGCAGCAGCAGGCGGAGCAGGACATGGTGGAGGAGCAGGAACAGGCGGAGCAGCCGCCAACAAGTTTGATAAGTTGACAGGCGAAAGCATTAAAAGTCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGCTACTTGAAGCATCACGTGCAGAGCCATGCCGAACATTTGCCTTTCAAATGCGAATACTGCGCCAAACTATTCAAACATAAGCGCTCCCGAGATCGTCATAAGAAATTGCATACGAATGAGAGGAACTACAAGTGTCCACATTGTGAGGCTGCTTTCTCAAGAAGCGATCATTTAAAGATCCATATGAAGACGCACGATATACAGAAACCCTTTCAGTGCAGCATGTGTAATCGTGGTTATAATACAGCTGCCGCTTTAACCTCCCACATGCAGAAGCACAAGAAGAATGCTGCAATCCTCGCAGCTGGTGGCAATCCCAATGCACTCAACTATAGTCCACGTTCCACGGGCTCTGCTTCAATCTCTAGCAATGGTAGTCTACACAAGCGTCGCTATGCCTTGGCACTTGCTTCGGATAGCAGTCCCAGTCGTCTGGAATTTCCCAAGCGAGCTCGCGGTGGAGCAGTTCCAATCACGCCCACGCCAACACCTCTGCTCAGATGCAGCTACTGCAGTCCCAAAGTAATGGAATTCAGCAGTCTGGAACAACTGAATGCACATCTTCAGGCAGCACACGAGCAACAGCAACAACCGCAGCAGCAACAGCAGGGAGGAAGAAGCTCCACAGCCCTGTCCAACAACACGGAGCAAGTGGATCCTCCTCCCACAAATGGTTTTCAACTCAATTGCGAATATTGCACAATGAAATTTGTCAATATTGCTGCACTCTTTCAACACATGCGATCAACGCATTTGGATCGTTTGAGTAGTCCAAATTCGTACTATGAACACTTTAATCGTCTGGCAACGGCAGGCACATTTAGTCCTCGTTTGGAGATGCCAAAAATCAAGCAGGATTTGCCAAGTCCACCGGCAGAAGACCTGCCGACGGATCTGAGCAGCAATAAGCGAAGAACTTTAACACCACCACCAGCGCCACCTGGTGTCTTCTTTTGCAATCAATGCAACGCGGGGTTGCCAGACTTTGAAAGCTTTCGCAATCATTTGAAAACCCATATTGCTGAGGGCATGCAGCTGATATGTCCTCACTGCGGCCTGAGTCTCCCGGAACAAAGTGAGTTCGAACGTCATGTTGTGGCCCATTTTTTAATCACCGGCTCCGAGTTCAATTGTGGTGCCAGTTGTGGCAAATCCTTTGCCAAATCGGATGAACTGCAGCAGCATTTAATCAGTGAACATGTTCAGACTTTGCTCAAGTGTTCCATCTGCTCGGAGCTGTGTGAGAATCGTATGTCCATGCAGCTTCACTTGGCCTGTGCTCATAGTCAGGAGACAAAGTTACTGCGATGCAGTGCGTGCTTGGAACTCTTTCGCAATGATACGGATTTCCATGTGCATGTTAAGACGCGACATCAGCTGGTTGGAGGCAATGCTCCTGCCGGACCCGGTGCTGGACCACCCAATGCTCCGCCTGCAAATCCTTTGCAGTGTATGTTTTGTCGCGCCGTTTGTGCTTCGGAGCTGGAAATGCATTTCCATTTGGCGGCGCATGCCAGGCAATTTCGTTGTCCCAGTTGTCCCGAGACGTTCCATGTGGAATTCCTGCTCGATCGTCATATGCAGAGTCAGCATGGTGGTGTCAAGGATAAACAGCAGGAGCAGGCTACAAATCCCATGGGCAGTTTATATGTGAATGCTTTGTTGCCACCGTTGGCGGCTGCCGCTGCAGCTGCTGCTGCTGCCACAAATAATAACAGTAATCTGCATATCGATTATAATGTGGCATTCAAAGGACTTTTCGGTGGAGGAAATGCCAATCCGACGAATGCACAGCCAAACAACAAGTTCTACAGTCCATTACAGGTCGATACCAGCGCTTTGAAGCCACAACAAACCCCACATCCTGCACTCATGTACGGTCTTAGTCAACGCTATTTGATGGAGATGTATGCTGCAAAGGCAACATCACCCGCTGCCAGTGCACCCGAACTACCGGCACAGGCAACCCAATCAGCAAATGCGACGGCATCCAGCACTGGGAGCAGCTACAGCTGTGGCATGTGTGAGCGACAGGATTTGCGCAGTGAGGCCGAGCTGCATTCACATCGAAAACTAGCTCATAATCTGAAGACGGGTGTGAGTTTAAGATGTGCGTATTGTTCGGGCAATTATAAGTCCCGGGCGGAGCTGGAGCAGCACATGAAGAGCTGTCACAATTCGAGTGGGAAACACAAGTGTCTCATTTGCGATGAGATCTTTCCATCGCCGGCCATACTTGCCGAGCACAAGCTGCAGCATTCCAAGGTGGGACAGTCGGGCAAATGTGCCCATTGTGGTCAGCAGTTGGAGCATGTCGCTGCCTTTCGGGCACATCTTGGCGAGCATGGTAATGATGGTAATTTACCCATGGCTTGCATATGCTGCCGTCAAACCTTACACTCGGAGTTCGAGTTGAGCTTGCATGCAAAGTTCCACACAAAATCTCCAAATTGTGGCAGCCTCCAGGAACCCGTTTGTGCTCTGTGCTTGGAACCCTTGCCGGAAGCGGGAGAAACGGCCAAATTGTGTGACAAATGCTGTCGCAAACATAATTTGAATGGTAAGCGAAATAAGGAAGCACCTCCAGTGGTAGCTCCCCCACCACCATCAGCATCAACAGTGGGTTATCTGGAGAATCGTTGCAATCTATGCAAGCTCATACTGCCCCATGCTCAAAAACTGCAGGAACACTTGGTGGAACATACGTTTGCCGGTACCGAACAGCGTGGCTTCAATTGCTACATTTGTTCGGCGGTATTCACGGCTCCGGGTGGTCTTTTGGCTCACATTGCTGAGCATGGTGCTCGACCCTACGATTGTAATTTGTGCCCCGAGAAGTTCTACTTTCGTGCCGAACTCGAACATCATCAGCGTGCCCACGAACTACGTCAAATTCCAGCACCATCCCATCCAGCCCCGGCGGTACGTCCACCTCCCAAACAGGAACATCACAGCTCCACGGCCAGTTCACCCATTCTCAGTCCCAGTCATGTGAAGCAGGAGCTTTATGAGTCCGAAACTGCAGCCTCACCACAACAGCAAGACGAGTCACCAGCCCAGGAGGAGGAGGAGTACATTGAGGTTGAGCAGGTACCGCATGAAACCCGTTCCAATGAACTGTTATCCGGTGGACAGACCGAACGCTCCAGCAGCAGTGCCTGA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSIQPAKSEEAQTEESKANGDSATTMEQQDLPKPKRPXXXXXXXXXXXXXXALKIANKLRKINKEAKLAAAAAAAAGGAGHGGGAGTGGAAANKFDKLTGESIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPKRARGGAVPITPTPTPLLRCSYCSPKVMEFSSLEQLNAHLQAAHEQQQQPQQQQQGGRSSTALSNNTEQVDPPPTNGFQLNCEYCTMKFVNIAALFQHMRSTHLDRLSSPNSYYEHFNRLATAGTFSPRLEMPKIKQDLPSPPAEDLPTDLSSNKRRTLTPPPAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLICPHCGLSLPEQSEFERHVVAHFLITGSEFNCGASCGKSFAKSDELQQHLISEHVQTLLKCSICSELCENRMSMQLHLACAHSQETKLLRCSACLELFRNDTDFHVHVKTRHQLVGGNAPAGPGAGPPNAPPANPLQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGVKDKQQEQATNPMGSLYVNALLPPLAAAAAAAAAATNNNSNLHIDYNVAFKGLFGGGNANPTNAQPNNKFYSPLQVDTSALKPQQTPHPALMYGLSQRYLMEMYAAKATSPAASAPELPAQATQSANATASSTGSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLGEHGNDGNLPMACICCRQTLHSEFELSLHAKFHTKSPNCGSLQEPVCALCLEPLPEAGETAKLCDKCCRKHNLNGKRNKEAPPVVAPPPPSASTVGYLENRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPGGLLAHIAEHGARPYDCNLCPEKFYFRAELEHHQRAHELRQIPAPSHPAPAVRPPPKQEHHSSTASSPILSPSHVKQELYESETAASPQQQDESPAQEEEEYIEVEQVPHETRSNELLSGGQTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00538445;
- 90% Identity
- -
- 80% Identity
- -