Basic Information

Insect: Scaptomyza pallida
Gene Symbol: -
Assembly: GCA_018152965.1
Location: JAECXP010000123.1:204811-209469[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1e-07 7.6e-06 26.1 1.8 2 23 140 161 140 161 0.97

2 9 2.6e-07 1.9e-05 24.9 1.6 1 23 167 189 167 189 0.98

3 9 1.2e-07 8.9e-06 25.9 1.1 1 23 195 217 195 217 0.98

4 9 7.3e-07 5.4e-05 23.5 0.7 1 23 223 247 223 248 0.95

5 9 0.00011 0.0083 16.6 3.0 1 23 253 275 253 275 0.97

6 9 0.0004 0.029 14.9 3.3 1 23 281 304 281 304 0.98

7 9 0.00018 0.013 16.0 2.7 1 23 310 332 310 332 0.99

8 9 4.1e-06 0.0003 21.1 0.8 1 23 337 359 337 359 0.98

9 9 0.0056 0.41 11.2 0.3 3 23 367 390 365 390 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1e-07	7.6e-06	26.1	1.8	2	23	140	161	140	161	0.97
2	9	2.6e-07	1.9e-05	24.9	1.6	1	23	167	189	167	189	0.98
3	9	1.2e-07	8.9e-06	25.9	1.1	1	23	195	217	195	217	0.98
4	9	7.3e-07	5.4e-05	23.5	0.7	1	23	223	247	223	248	0.95
5	9	0.00011	0.0083	16.6	3.0	1	23	253	275	253	275	0.97
6	9	0.0004	0.029	14.9	3.3	1	23	281	304	281	304	0.98
7	9	0.00018	0.013	16.0	2.7	1	23	310	332	310	332	0.99
8	9	4.1e-06	0.0003	21.1	0.8	1	23	337	359	337	359	0.98
9	9	0.0056	0.41	11.2	0.3	3	23	367	390	365	390	0.94

Sequence Information

Coding Sequence: ATGGACACCATTTGTAGGCTGTGCTTCCAGACAGCAACGTTATTCCAAGTGCCCGGCTATAGCATACCCACGTGCGTGCGCTGCTCGGAGCAGTTGACAAACAATTCAAACTTCCATCAGGCAGTGCGTGTGCAGGACGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATCAAGTTCTTCCGAGAATCTACAATCGCAGGACGATTCTGAAGATGTGGATCTGATATTCAACGAGGAGGGCTCTTGCCCGCTGTGCAACAAGACCTTCTCGCGCAAATCCTCGCTCATGACGCACATACGAAATCACTCGGCTGAGCGCAAATTTGTGTGCACCTACTGCCATAAAGGCTTTACGCAAGCAGCAAATTTGCGCAATCACGAACGTATACACACAAATGATCGGCCCTACCAGTGCGTGGATTGCGGCAAAACCTTTACCCAAATCACAAACCTTAACAATCATCGACGTCTACATACCGGCGAACGGCCTTTTGTCTGCAATGAGCCCGAATGTGGACGCAGTTTTGCCCAGGTGACCAATCTGAACAATCACATGAAGTCACACCACAAGGTGCAACAGTATTGTTGCAACGTATGCAGCAAGAAGTTCACACAGGTCACCTCATTGAATCAGCATCTGCAGGCGCATGCCGGCGTCACCGGCTACTATTGCCCCCGATGTCCGGAGAAGAACTTCAAGTTGCAATCACAGTTGCATACGCACATGAAGACGCATGGCTTGGCCTTTCCCTACGAGTGCAGCAAGTGCGATGAGAAGTTTCTGCAGCAATCGCATCTCGATCAGCATCTCAAAATGCACGATGAGTTCAAGTTCAAATGCGACATTTGCCCCAGCAGCTTCAATCAGGAATCGTTGCTCAAGAAGCATGTGCAACGCCATGTCGAGGGTCGCTATCTCAACTGCCCGGTGGCCAATTGTGCGGAATCGTTTGCTGTGCGCCAACATCTATCCAAACACTTGCTCACCAATCACTCGCATCACGAGCTGCCGCCACCGAAACGATCCAAAAAGACGGTCACATTGCAGTCGCCGCAACAGCCGTTGGCCATGATCGGTCAGCCATTATCGTTGCAACATACGACGGGGCAGCGTGGCCGACCGCCAAAAAACAAGAACAAAACCTCCTCACTGGCAGCCACGGCCATTAAGATTGAGATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCGCTTCATACCCACTAAATAG
Protein Sequence: MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQAVRVQDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCTYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCSKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGLAFPYECSKCDEKFLQQSHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLNCPVANCAESFAVRQHLSKHLLTNHSHHELPPPKRSKKTVTLQSPQQPLAMIGQPLSLQHTTGQRGRPPKNKNKTSSLAATAIKIEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARFIPTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322806;
90% Identity: iTF_01322806;
80% Identity: -