Basic Information

Insect: Scaptomyza pallida
Gene Symbol: -
Assembly: GCA_018152965.1
Location: JAECXP010000050.1:624504-629388[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.9e-05 0.0044 17.5 2.5 1 23 329 352 329 352 0.97

2 19 0.001 0.075 13.6 2.1 2 23 357 378 356 378 0.96

3 19 0.00013 0.0094 16.4 2.0 1 23 384 406 384 406 0.98

4 19 1.6e-05 0.0012 19.2 2.5 2 23 411 432 410 432 0.97

5 19 0.0024 0.18 12.4 3.0 1 23 438 460 438 460 0.98

6 19 0.00033 0.024 15.1 2.0 1 23 697 720 697 720 0.96

7 19 3.3 2.4e+02 2.5 7.7 2 23 725 746 724 746 0.94

8 19 6.7e-05 0.005 17.3 1.6 1 23 752 774 752 774 0.98

9 19 4.1e-05 0.003 18.0 0.9 2 23 779 800 778 800 0.97

10 19 0.01 0.76 10.4 3.3 1 23 806 828 806 828 0.98

11 19 0.00017 0.013 16.0 2.4 1 23 973 996 973 996 0.97

12 19 0.0014 0.11 13.1 2.1 2 23 1001 1022 1000 1022 0.93

13 19 6.9e-05 0.0051 17.2 2.3 1 23 1028 1050 1028 1050 0.98

14 19 4.1e-05 0.003 18.0 0.9 2 23 1055 1076 1054 1076 0.97

15 19 0.01 0.76 10.4 3.3 1 23 1082 1104 1082 1104 0.98

16 19 0.00017 0.013 16.0 2.4 1 23 1249 1272 1249 1272 0.97

17 19 0.0022 0.16 12.5 1.6 2 23 1277 1298 1276 1298 0.93

18 19 2.6e-05 0.0019 18.6 1.7 2 23 1309 1330 1308 1330 0.97

19 19 0.0053 0.39 11.3 0.3 2 23 1342 1363 1341 1363 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.9e-05	0.0044	17.5	2.5	1	23	329	352	329	352	0.97
2	19	0.001	0.075	13.6	2.1	2	23	357	378	356	378	0.96
3	19	0.00013	0.0094	16.4	2.0	1	23	384	406	384	406	0.98
4	19	1.6e-05	0.0012	19.2	2.5	2	23	411	432	410	432	0.97
5	19	0.0024	0.18	12.4	3.0	1	23	438	460	438	460	0.98
6	19	0.00033	0.024	15.1	2.0	1	23	697	720	697	720	0.96
7	19	3.3	2.4e+02	2.5	7.7	2	23	725	746	724	746	0.94
8	19	6.7e-05	0.005	17.3	1.6	1	23	752	774	752	774	0.98
9	19	4.1e-05	0.003	18.0	0.9	2	23	779	800	778	800	0.97
10	19	0.01	0.76	10.4	3.3	1	23	806	828	806	828	0.98
11	19	0.00017	0.013	16.0	2.4	1	23	973	996	973	996	0.97
12	19	0.0014	0.11	13.1	2.1	2	23	1001	1022	1000	1022	0.93
13	19	6.9e-05	0.0051	17.2	2.3	1	23	1028	1050	1028	1050	0.98
14	19	4.1e-05	0.003	18.0	0.9	2	23	1055	1076	1054	1076	0.97
15	19	0.01	0.76	10.4	3.3	1	23	1082	1104	1082	1104	0.98
16	19	0.00017	0.013	16.0	2.4	1	23	1249	1272	1249	1272	0.97
17	19	0.0022	0.16	12.5	1.6	2	23	1277	1298	1276	1298	0.93
18	19	2.6e-05	0.0019	18.6	1.7	2	23	1309	1330	1308	1330	0.97
19	19	0.0053	0.39	11.3	0.3	2	23	1342	1363	1341	1363	0.94

Sequence Information

Coding Sequence: ATGGCGAAAGGCGAAGATAATTCAATAAGTGATAGCCATTGGCTAAACTGGTGTCGTCTTTGCGGCAGCAAGGAGGATATTCAGGGAAACGTTAAGATATATACAAATGAGACAGAAAACACCCAAAACAGTGTTGTGGAGATGGCCATCAGAAAATTTTTTGATGTACATATGCAAGGAAGGGATGAACCATATGGTGTGCTGTGCGAGACATGTTATACTTTTATGATCAAGCTAATTGACTTTGCCGAACATGTTACTAAGGTCCAAGCCATGTTTGAGGTATTTCGAAACACTGCAGAAAAGCCGGAAATATATGAGTCACCCAATACAAAGGATCAGCCGGAAATCACACCCGAAAAGGAAAATATCAATCTTCTGTCTGCTGAAGAAGGTTCATATCCAAGCAGCACGGCATTCGACCAAACTGCAAACAATGAGATAAGCTTATCAATAGATGGCAATAATGTTATAATTAAGAGCGAAGAGGAGACGCAAAGCTGCACGGCATTCGACCAAACTACAAACAAAGAGAAAAGCTTACAAATAGAAAGAAATAATGGAATAATTAAGAGCGAAGTGGAGACGCAAATTGAGTTTAATGAATATAGTATCTCAGAAGCAGTTGATTTTTCATCTATAGATGAAGATATGACTAATACAAGCAGCACCGTTGAAAGCGAGAAGAATCCACCTAATACAAAGGATCTGCCGGAAATCGCACCCAAAGAAGATAATATCAATTTTCTGTCTGCTGAAGAAGTTTCATATCCAAGCTGCACGGTATTCGACCAAACTCCAAACAAAGAGATAAGCTTATCAATAGATAGAAATAATGAAATAATTAAGAGCGAAGTGGAGACGCAAATTGAGTTTAATCAATATAGTATCTCAGATGCAGTTGATTTTTCATCTTTAGATGAAGATATGACTAATACAAGCAGAACCGTTGAAAGAGAGAAGCATTCCAATGGAAATGACAGTTATTACTGTAAACTGTGTAACAGGACGCTGGATTCTAAAAGAAATCTAAGGAAGCATATGGAGCGCATGCATGAAAAATCCATGAAGTGTCACGTTTGTGGCAAACAGTTTACAGGCAAGATGAAACTTTCACAACACAAGGCAGTGCATATAAATGAGCATCCCTTTAGCTGTAAGATATGCAATGCCCGCTTCAAGACTGAAGTATGGCTAAACAAACATCATCAAATCCATGTAGCCCCCATGAAGTGTGATGTATGTGGCAAGAAATTTACGAAAAAGACAATGCTGACAAAACACAAGCTAATGCATTCTGACGAGCATCCCTTTAGCTGTAAGATATGCAATGCCCGCTTCACGAGTGGAACATTCCTAAACAGACATCATCAAATTCATGAAGGGTCCAAACTCAAGTGTGATGAGGAAACGCAAAGCTGCGCGGCATTCGACCAAACTGCAAACAAAGAGATAAGCTCATCAATAGATGGCAATAATGTAATAATTAACAGCGAAGAGGAGACGCAAAGCTGCACGGCGTTCGACCAAACTGCAAACAAAGAGATAAGCTCATCAATAGATGGCAATAGTGTAATAGTTAACAGCGAAGAGGAGACGCAAAGCTGCGCGGCATTCGACCAAACTACAAACAAAGAGATAAGCCTCTCAATAGAAAGCAATAATGAAATGATTAAGAGCGAAAATGAGACGCAAATTGAGACTACCGAATATAGTATCTCAGAAGCAGTTGATTTTTCATCTATAGATGAAGATATGACTAATACAAGCAGCACCGTTGAAAGCGAGAAGCATCCACCTAATACAAAGGATCTGCCGGAAATCGCACCCAAAGAAGATAATATCAATTTTCTGTCTGCTGAAGAAGTTTCATATCCAAGCTGCACGGCATTCGACCAAACTGCAAACAAAGAGATAAGCTTATCAATAGATATAAATAATGAAATAATTAGAGGCGAAAATGAGACGCAAATTGAGACTACCGAATATAGTATCTCAGAAGCATTTAATTTTTCATCTAAAGATGAAGATATGACCAATACAAGCACCACCGTTGAAAGCGAGAAGCATCCCAAAGGAAATGTCAGTTATTACTGTAAACTGTGTAACAGGACGCTGGATTCTAAAAGAAATCTAAGGAAGCATGTGGAGCGCATGCATGAAAAATCCATGAAGTGTCACGTTTGTTGCAAACAGTTTACGAACAAGAGGAAATTTTCAAAACACAAGGCAGGGCATATAAATGAGCGTCCCTTTAGCTGTAAGATATGCGATGCCCGCTTCAAGACTGAAGTATGGCTAAACAAACATCATCAAATCCATGTAGCCCCCATGAAGTGTGATGTATGTGGCAAGAAATTTACGGAAAAGGCAAAATTGACACAACACAAGCTAGTGCATTCTGAAGAGCATCCCTTTAGCTGTAAGATATGCAATGCCCGCTTCACGAGTGGAACATTCCTATACAGACATCATCAAATTCATGAAGGGTCCAAACTCAAGTGTGATGAGGAGACGCAAAGCTGCGCGGCATTCGACCAAACTGCAAACAAAGAGATAAGCTCATCAATAGATGGCAAAAGTGTAATAGTTAACAGCGAAGAGGAGACGCTAAGCTGCGCGGCATTCGACCAAACTACAAACAAAGAGATAAGCCTCTCAATAGAAGGCAATAATGGAGTAATTAAGAGCGACGAGGAGACGCAAAGCTGCACGGCATTCGACCAAACTGCAAACAAAGAGATAAGCTTATCAATAGATATAAATAATGAAATAATTAAGAGCAAAGAGGAGACGCAAATTGAGACTACCCAATATAGTATGTCAGAAGCATTTAATTCTTCATCTAAAGACGAAGATATGACCAATACAAGCAGCACCGTTGAATTAGAGAAGCATCCCAAAGGAAATGTCAGTTATTACTGTAAACTGTGTAACAGGACGCTGGATTCTAAAAGAAGTCTAAGGAAGCATATGGAGCGCATGCATGAAGCCCCCATGAAGTGTCTCGTTTGTGGCAAACAGTTTACGAACAAGAGGAAATTTTCAAAACACAAGGCAGGGCATATAAATGAGCGTCCCTTTAGCTGTAAGATATGCGATGCCCGCTTCAAGACTGAAACATGGCTAAACAAACATCATCAAATCCATGTAGCCCCCATGAAGTGTGATGTATGTGGCAAGAAATTTACGGAAAAGGCAAAATTGACACAACACAAGCTAGTGCATTCTGAAGAGCATCCCTTTAGCTGTAAGATATGCAATGCCCGCTTCACGAGTGGAACATTCCTATACAGACATCATCAAATTCATGAAGGGTCCAAACTCAAGTGTGATGAGGAGACGCAAAGCTGCGCGGCATTCGACCAAACTGCAAACAAAGAGATAAGCTCATCAATAGATGGCAAAAGTGTAATAGTTAACAGCGAAGAGGAGACGCAAAGCTGCGCGGCATTCGACCAAACTACAAACAAAGAGATAAGCCTCTCAATAGAAGGCAATAATGGAATAATTAAGATCGACGAGGAGACGCAAAGCTGCACGGCATTCGACCAAACTGCAAACAAAGAGATAAGCTTATCAATAGATATAAATAATGAAATAATTAAGAGCAAAGAGGAGACGCAAATTAAGACTACCCAACATAGTATCTCAGAAGCATTTAATTTTTCATCTAAAGATGAAGATATGACCAATACAAGCAGCACCGTTGAAATAGAGAAGCATCCCAAAGGAAATGTCAGTTATTACTGTAAACTGTGTAACAGGACGCTGGATTCTAAAAGAAGTCTAAGGAAGCATATGGAGCGCATGCATGAAGCCCCCATGAAGTGTCTCGTTTGTGGCAAACAGTTTACGAACAAGATGAAATTTTCAAAACACAAGGCAGGGCATATAAATGAGCGTCCCTTTAGCTCCCCCATGAAGTGTGATGTATGTGGCAAGAAATTTACGGAAAAGACAATGCTGACAAAACACAAGCTAATGCATTCTGAAGAGCATTCCTTAAGCTGGTCCAAACTCAATTGTGATGTATGTGGCCTGCAATTTACCAAAATGGCAATGCTGACAAAACACAAGCTAGAGCATTCTGAAGAGCATCCCTTAAGATATTTTCCTTACGCACACACCGTAAAAAGACACAAAAAGAAGGTGCATCCAAAGGAATATGCTAGAGATGAGGACAAGTCATCTGGGGTTTCCAAAATTCCCACATTGCATGAGCTACGTGAATTAGGTTTTAAGTACCACCGCGACTCCTGGAAAACCGAAGCTATTGAATAA
Protein Sequence: MAKGEDNSISDSHWLNWCRLCGSKEDIQGNVKIYTNETENTQNSVVEMAIRKFFDVHMQGRDEPYGVLCETCYTFMIKLIDFAEHVTKVQAMFEVFRNTAEKPEIYESPNTKDQPEITPEKENINLLSAEEGSYPSSTAFDQTANNEISLSIDGNNVIIKSEEETQSCTAFDQTTNKEKSLQIERNNGIIKSEVETQIEFNEYSISEAVDFSSIDEDMTNTSSTVESEKNPPNTKDLPEIAPKEDNINFLSAEEVSYPSCTVFDQTPNKEISLSIDRNNEIIKSEVETQIEFNQYSISDAVDFSSLDEDMTNTSRTVEREKHSNGNDSYYCKLCNRTLDSKRNLRKHMERMHEKSMKCHVCGKQFTGKMKLSQHKAVHINEHPFSCKICNARFKTEVWLNKHHQIHVAPMKCDVCGKKFTKKTMLTKHKLMHSDEHPFSCKICNARFTSGTFLNRHHQIHEGSKLKCDEETQSCAAFDQTANKEISSSIDGNNVIINSEEETQSCTAFDQTANKEISSSIDGNSVIVNSEEETQSCAAFDQTTNKEISLSIESNNEMIKSENETQIETTEYSISEAVDFSSIDEDMTNTSSTVESEKHPPNTKDLPEIAPKEDNINFLSAEEVSYPSCTAFDQTANKEISLSIDINNEIIRGENETQIETTEYSISEAFNFSSKDEDMTNTSTTVESEKHPKGNVSYYCKLCNRTLDSKRNLRKHVERMHEKSMKCHVCCKQFTNKRKFSKHKAGHINERPFSCKICDARFKTEVWLNKHHQIHVAPMKCDVCGKKFTEKAKLTQHKLVHSEEHPFSCKICNARFTSGTFLYRHHQIHEGSKLKCDEETQSCAAFDQTANKEISSSIDGKSVIVNSEEETLSCAAFDQTTNKEISLSIEGNNGVIKSDEETQSCTAFDQTANKEISLSIDINNEIIKSKEETQIETTQYSMSEAFNSSSKDEDMTNTSSTVELEKHPKGNVSYYCKLCNRTLDSKRSLRKHMERMHEAPMKCLVCGKQFTNKRKFSKHKAGHINERPFSCKICDARFKTETWLNKHHQIHVAPMKCDVCGKKFTEKAKLTQHKLVHSEEHPFSCKICNARFTSGTFLYRHHQIHEGSKLKCDEETQSCAAFDQTANKEISSSIDGKSVIVNSEEETQSCAAFDQTTNKEISLSIEGNNGIIKIDEETQSCTAFDQTANKEISLSIDINNEIIKSKEETQIKTTQHSISEAFNFSSKDEDMTNTSSTVEIEKHPKGNVSYYCKLCNRTLDSKRSLRKHMERMHEAPMKCLVCGKQFTNKMKFSKHKAGHINERPFSSPMKCDVCGKKFTEKTMLTKHKLMHSEEHSLSWSKLNCDVCGLQFTKMAMLTKHKLEHSEEHPLRYFPYAHTVKRHKKKVHPKEYARDEDKSSGVSKIPTLHELRELGFKYHRDSWKTEAIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -