Basic Information

Insect: Scaptomyza pallida
Gene Symbol: -
Assembly: GCA_018152965.1
Location: JAECXP010000002.1:923505-928653[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00052 0.038 14.5 1.6 1 23 217 239 217 239 0.97

2 26 0.61 45 4.8 2.0 1 23 245 269 245 269 0.95

3 26 0.23 17 6.2 0.7 2 23 304 325 303 325 0.96

4 26 0.025 1.9 9.2 1.3 1 23 399 422 399 422 0.93

5 26 1.2 89 3.9 0.5 2 22 434 454 433 454 0.93

6 26 2.1 1.5e+02 3.2 0.5 1 20 463 482 463 484 0.91

7 26 1.8 1.3e+02 3.4 1.1 2 23 498 519 497 519 0.96

8 26 0.0057 0.42 11.2 1.7 1 23 593 616 593 616 0.96

9 26 0.0034 0.25 11.9 0.0 1 22 625 646 625 646 0.95

10 26 0.00022 0.016 15.6 0.6 1 23 655 678 655 678 0.96

11 26 4.1e-05 0.003 18.0 0.4 2 23 695 716 694 716 0.97

12 26 8e-06 0.00059 20.2 5.4 1 23 722 744 722 744 0.98

13 26 0.0074 0.55 10.9 3.6 1 23 890 913 890 913 0.95

14 26 0.0049 0.36 11.4 3.1 1 22 920 941 920 941 0.96

15 26 0.22 16 6.2 0.7 1 23 950 973 950 973 0.91

16 26 6.8e-05 0.005 17.3 1.9 1 23 999 1021 999 1021 0.97

17 26 2.4e-05 0.0018 18.7 3.0 1 23 1028 1050 1028 1050 0.98

18 26 0.0052 0.38 11.3 0.0 2 20 1077 1095 1076 1097 0.94

19 26 0.0015 0.11 13.1 1.8 1 23 1142 1165 1142 1165 0.96

20 26 0.0069 0.51 10.9 1.4 1 23 1202 1225 1202 1225 0.96

21 26 0.013 0.99 10.0 3.1 1 23 1247 1270 1247 1270 0.97

22 26 1.3e-05 0.00094 19.6 0.1 2 23 1296 1317 1295 1317 0.95

23 26 4.3e-05 0.0032 17.9 2.9 1 23 1323 1345 1323 1345 0.99

24 26 5.2e-06 0.00038 20.8 2.2 1 23 1351 1373 1351 1373 0.97

25 26 1.9e-07 1.4e-05 25.3 2.4 1 23 1379 1401 1379 1401 0.99

26 26 0.00034 0.025 15.1 0.2 1 23 1407 1430 1407 1430 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00052	0.038	14.5	1.6	1	23	217	239	217	239	0.97
2	26	0.61	45	4.8	2.0	1	23	245	269	245	269	0.95
3	26	0.23	17	6.2	0.7	2	23	304	325	303	325	0.96
4	26	0.025	1.9	9.2	1.3	1	23	399	422	399	422	0.93
5	26	1.2	89	3.9	0.5	2	22	434	454	433	454	0.93
6	26	2.1	1.5e+02	3.2	0.5	1	20	463	482	463	484	0.91
7	26	1.8	1.3e+02	3.4	1.1	2	23	498	519	497	519	0.96
8	26	0.0057	0.42	11.2	1.7	1	23	593	616	593	616	0.96
9	26	0.0034	0.25	11.9	0.0	1	22	625	646	625	646	0.95
10	26	0.00022	0.016	15.6	0.6	1	23	655	678	655	678	0.96
11	26	4.1e-05	0.003	18.0	0.4	2	23	695	716	694	716	0.97
12	26	8e-06	0.00059	20.2	5.4	1	23	722	744	722	744	0.98
13	26	0.0074	0.55	10.9	3.6	1	23	890	913	890	913	0.95
14	26	0.0049	0.36	11.4	3.1	1	22	920	941	920	941	0.96
15	26	0.22	16	6.2	0.7	1	23	950	973	950	973	0.91
16	26	6.8e-05	0.005	17.3	1.9	1	23	999	1021	999	1021	0.97
17	26	2.4e-05	0.0018	18.7	3.0	1	23	1028	1050	1028	1050	0.98
18	26	0.0052	0.38	11.3	0.0	2	20	1077	1095	1076	1097	0.94
19	26	0.0015	0.11	13.1	1.8	1	23	1142	1165	1142	1165	0.96
20	26	0.0069	0.51	10.9	1.4	1	23	1202	1225	1202	1225	0.96
21	26	0.013	0.99	10.0	3.1	1	23	1247	1270	1247	1270	0.97
22	26	1.3e-05	0.00094	19.6	0.1	2	23	1296	1317	1295	1317	0.95
23	26	4.3e-05	0.0032	17.9	2.9	1	23	1323	1345	1323	1345	0.99
24	26	5.2e-06	0.00038	20.8	2.2	1	23	1351	1373	1351	1373	0.97
25	26	1.9e-07	1.4e-05	25.3	2.4	1	23	1379	1401	1379	1401	0.99
26	26	0.00034	0.025	15.1	0.2	1	23	1407	1430	1407	1430	0.95

Sequence Information

Coding Sequence: ATGTTGCTGGCAAATATTTGTCGCACATGTGCAATACAAGATGACAACTTGTTGGCGCTGTCGTCGCTCAGTAAAAAACACCATGAACAAACTTTTAGTGACATGTTGCACGAATTAACACAATACGATCCCCTGTTGGAGCATTCAGACGATAATCTGCCGCAGCAACTGTGCGACCTATGTTTAAGCCAGTTGGAAGCTGCATATGAATTTGTGCTGCAGGCTCGCCAGGCTCATAAGCAACATTTGTTGAAACTACGCAAAGGATTGCTTAAAGAAATGACCATTGATATTACACTAGAGCACATGAAAACTGAAACTGATATTGACCTAGATGCTGATACCAACGCAGAGGAGGACGCTAATATGGAGGATGAGAAAGAAAAGGATGCTTTAGCTGTTTCTATCACTGGCCTTAAATGCCAACTAACAACTGATAGCGATAGCAGTGACGAAAACGTAGATCACAATGATGTTGAATTTAAGCCCCCGCAACTTCGGCGCAGTGCTCGTCGAGCCAAACCTAAAACCCCTAAAAGCGAAAATGATTCGAGTTGTGACCAAGAAGAGCTTGAGCCAGCAGTTAAGCGTGGTCGTGGGCGTCCCGCTCGTCAAAACAAACCGAAGACCATCACCGAGGATTGCCGGCACATGTGTAATGTGTGTGGCAAGACATATTCGTGGTATCGCGACTTGCAGCGCCATGAGCGCATTCATTTTGACTACGCGCCCTTTGTGTGCGAAGAGCGAAGTTGCGGCAAGAAGTTCTTGCGCAAGGATAAGTACATGTTCCATTTGCGAACGCACAAGAAACGACAAGCAACTACAGTACAGCAGCAGGCCCAGCAAATAGGCAGTGAATGGCGCTACGCTGAGCGTCTCTACAGCTCGGGTTGCCTGAAGCTTGTAGAGTGCAAGCTGTGCGGCTTGAAGTGTCAGCGCATACAGGAGATGCGTGAGCATATAGCCAGTCATGTTAACATTGAAACATTATCAAATCTCAGTTTTGACAACGATGTGATAAAGGAGCAATATAGCAGCCAATGGGATTTGCAACAGATTAAGCAAGAGGTGTGTATGCAAATTGCTAAAGGACGCGATCACCTCGATAACTTTTGTGCCATTGTGAATGATTACGGCTATGAGCTGTGCCTTAGCGATTCGGATGAGGAGCTGCCTGACGTACCGGCACAATATCAATGCCTGCCTTGCAGTGCCAGCTTTACACGCAAACATCTACTCATCCAACACACTTTAGAGCAGCACACTCAAACGCTCGAATCGGAGGCGCCATGGGTGCGCTGCAATATCTGTCAAATTGGCTTTGTTTGCATCAAACTGCTGGAACAACACCAGCGCAAACAGTGCCTTAATCCGCTAAAGCGTTACAGCTGCAACAATTGTCCGGGCAAATTTATTTGGCTTCAAAATCTGCAGCAACACGCTTGCAGTCGACTGCAACAGGATCAACCAAAGAATTATCGCAAAATGCAATGTTGTCTGTGCAATGCCAAGCTAGGCAGCATGATATCTTTGCGATCCCATTTACTTACTCATCGAGATGGACACACTGGCATTGATCCGCAGCAGCACGCTGACTTCTTTCGCACCTATTATCGGGATGACAATGAATGCAGTCTTCCAGAGCTTAGGGCACGCATCGCTGAGGACTTTCAATCACAAAATTATGGACGCTACTTTAATGCCTGCACAGGCAGCGGCCAGGAGTTGGACTTCAATGATTCCGATACTGCTTTAAGCGATGCACCCAGTCGGCACAGCTGTGCCGTGTGTGGCGAGAATACCGAACACCTTGTCCAATTGCAAAAACATCAGCAAAGTAATCATAGTGAGGACGACAAAGGTTTGCCTTTCGCCTGTACTGATTGCGGTGCGGGATTTGTGGCTGAATCTCTGCTCCGGCAACATCGTCGTCGAATTTGCGCCAAGCAGCAAGCTAAATACAATTGCCCGGAATGCGGCCAGCGTTTTTACTGGCTCTCTAACTATGAACGACACATGCAACTAAAGCACGTAAGCGAGGCTCAGACTCAGACACACAACCGACAAACATCGAAGTTGCAGTGCAACGAATGCGATAAGGTATTTATCTGGCCCAAGGATCTGACGCGTCACAAACGAATGCATCAGTCACAGGAGCAGTTTGAATGTAACTTCTGTGAGCGCAAGTTTCATCGCAAGGATAACCTTAAGTCGCATATGCGAATGCACAGCAATCAAAGATTGGATGTTGACAACGAGCAACAGGACACGATGCAGCAGCGCATGCCCTTCATATTGAGCCACTTGTGTTCACCCAATGGCTGCAAGCTGATTCAGTGCATGATTTGCCTTTCCCAGCACACAAAGATCGCCGATTTGCGAGCGCATTTGGGAAGCCATCAGACGGCGCTTGAGCTTTCAACGGAACGCAGCAAACCAGAGAGCGTGGCCAACCTTTGTCGTGCTCTCTATCCCGAGTTAAGTGAGCCCTTGGATAAGCAGAACTTAATAAAGCGCATACAGAGTGACCTGACCAATAATCTGGACTTGGATAGATTTATTTCGATAACCAACGAAGCAGGCATTGAGTTAAGCTTAGATAGCAGCGAAACAGATACGGATTCGGATTCGCCAGACAATGGTCGCAGCAAGTGTGGACATCTGTACAGCTGCGAGGTGTGCAAGGTGTGCGTGACTCGTAAGCATCAGCTCTATGCCCACCAGCTGGAGAAGCACACATGGGAGCAGGCAGCGCATGTTTGCAGCCACTGCCAGGCGAGATTTGTGAATGAACAGCTGCTTAAGCATCACTATCGCACCCTTTGCCGTAATAGTCAGCGTCGTTTTCTTTGTCGCAAGTGTCCCTTACGCTTTCGCTGGCGCAACAATCTCAAGCTGCACACGGACATTGCGCATCAGGATGGGATTATGCAAGCACAGGGCAATCAGGACACTCAGCTGGATGGTTCACAAATGCTGCCGGCTGTTAGCTATGACTGTTTGGAGTGCAAGCGTAGCTTTAAAATGCAAAAGGATCTGACAAGGCACACGCTTATGCATACCCAGGACTCGACCATTTATCGTTGTCATTGGTGCGCACGTCGCTTCTATCGCCAGTCGAATTTGTTGCAGCACATTGAGCGTCATAGCATCAGCGCCGACCAGCTGCCCTATGCGGAGGCCCTGCTCAATGCCAGCCGTCATCCGCATGGCCAGAAATGCATTCAGTGCAAGGTATGCGAAATATCCTTTACCAGCATTGCGGCACTGCGTGCCCATCTCACAGCATCACCCGTTGGCACACATCATGCAATTGAGTCTATGCTCAACTATTCGATTACCGATCAGTTGGGCTATGAAATGCACTTGGAGGATTCGGAAACAGACGAGGAGGTTAAGCCGGAGGATACGCCAACGCATTACACTTGTGGCATTTGCCAGCTGCGTTGTGTGCGTAAATTTGAGCTGCAACAGCATCAGCAGGCTATGCATCGTCTAGAGCGAATTACTGATGGATGCGAGCTGTGCATCTTTAAGAGCGTCTCGCCCGATCTTATTGCCTATCATCGACGCGTTTTGTGTGACAATACGCAAAAGCAGTTCAAGTGCCTAACATGTAGCTACAGATTTATGTGGCAATCTAATCTTGAGCAGCACATGCAGCTACAGCATCCTAGCAGCGGGGAGCCAACTTCACTGACCGTGCTGCAAAAAGGTAACACTGATATCCAAATCTTTCAGTGCGGTCAGTGTCCCAGTAAATATAATCGCAAGGATCGCCTCACAGCGCATGTTAAGAAATGTCATGCAGACGGCGCAACAGCCTCTAAAAAGTCACCAGCGGCTGGCGCTGCCGCTGCCGCAAAGCAACAAAAGAGTTTTTTGTGCGCTTTCTGCGGCAAAGCGGTAAGCTCATCATCCAATTTAATCATACACATACGTCGACATACGGGTGAAAAGCCATTCAAGTGCGATTATTGCGATATGGCCTTTCCACGTTCCTCAGATCTTCAATGCCACAGACGCACCCACACGGGGGAGCGACCTCATGTTTGCACCGTTTGCAAGCGAGGATTCGCTCGCTCCTACAAACTGCAGCAGCACATGCGTATCCACAATGGCGAGCGACCCTACAAGTGTACCTATTGCGAAAAGAGCTTTACCCAGTCGAATGATTTAACTCTTCATATACGACGTCATACGGGCGAACGTCCTTATCAGTGTGATACGTGCGGCGAGCGGTTTATTCAGGGTACGGCTCTGAAAAATCATCGACTGCAGGCTCATATGGGAACGGATGTGGAAAAAGTAAAGGATGACTGA
Protein Sequence: MLLANICRTCAIQDDNLLALSSLSKKHHEQTFSDMLHELTQYDPLLEHSDDNLPQQLCDLCLSQLEAAYEFVLQARQAHKQHLLKLRKGLLKEMTIDITLEHMKTETDIDLDADTNAEEDANMEDEKEKDALAVSITGLKCQLTTDSDSSDENVDHNDVEFKPPQLRRSARRAKPKTPKSENDSSCDQEELEPAVKRGRGRPARQNKPKTITEDCRHMCNVCGKTYSWYRDLQRHERIHFDYAPFVCEERSCGKKFLRKDKYMFHLRTHKKRQATTVQQQAQQIGSEWRYAERLYSSGCLKLVECKLCGLKCQRIQEMREHIASHVNIETLSNLSFDNDVIKEQYSSQWDLQQIKQEVCMQIAKGRDHLDNFCAIVNDYGYELCLSDSDEELPDVPAQYQCLPCSASFTRKHLLIQHTLEQHTQTLESEAPWVRCNICQIGFVCIKLLEQHQRKQCLNPLKRYSCNNCPGKFIWLQNLQQHACSRLQQDQPKNYRKMQCCLCNAKLGSMISLRSHLLTHRDGHTGIDPQQHADFFRTYYRDDNECSLPELRARIAEDFQSQNYGRYFNACTGSGQELDFNDSDTALSDAPSRHSCAVCGENTEHLVQLQKHQQSNHSEDDKGLPFACTDCGAGFVAESLLRQHRRRICAKQQAKYNCPECGQRFYWLSNYERHMQLKHVSEAQTQTHNRQTSKLQCNECDKVFIWPKDLTRHKRMHQSQEQFECNFCERKFHRKDNLKSHMRMHSNQRLDVDNEQQDTMQQRMPFILSHLCSPNGCKLIQCMICLSQHTKIADLRAHLGSHQTALELSTERSKPESVANLCRALYPELSEPLDKQNLIKRIQSDLTNNLDLDRFISITNEAGIELSLDSSETDTDSDSPDNGRSKCGHLYSCEVCKVCVTRKHQLYAHQLEKHTWEQAAHVCSHCQARFVNEQLLKHHYRTLCRNSQRRFLCRKCPLRFRWRNNLKLHTDIAHQDGIMQAQGNQDTQLDGSQMLPAVSYDCLECKRSFKMQKDLTRHTLMHTQDSTIYRCHWCARRFYRQSNLLQHIERHSISADQLPYAEALLNASRHPHGQKCIQCKVCEISFTSIAALRAHLTASPVGTHHAIESMLNYSITDQLGYEMHLEDSETDEEVKPEDTPTHYTCGICQLRCVRKFELQQHQQAMHRLERITDGCELCIFKSVSPDLIAYHRRVLCDNTQKQFKCLTCSYRFMWQSNLEQHMQLQHPSSGEPTSLTVLQKGNTDIQIFQCGQCPSKYNRKDRLTAHVKKCHADGATASKKSPAAGAAAAAKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHVCTVCKRGFARSYKLQQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCDTCGERFIQGTALKNHRLQAHMGTDVEKVKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -