Spal006409.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- Mblk-1
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000001.1:2356726-2371622[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-07 0.00087 19.0 0.0 2 44 376 419 375 420 0.88 2 2 7.2e-19 1.9e-15 56.3 0.0 1 43 868 911 868 913 0.95
Sequence Information
- Coding Sequence
- ATGTCAGTCGAGCCGATGTGCGATGTGCGAGACGAGGCAAAGACGAAGCCCAAGCGCCGAGCAGGGCAATCGAATTTATTTGCTGCTTCTAATTTTGCCTATATTAGTCGAGCCATTTTGTATCGATGGGCACATTACATTATACATACAGTATGCTTAGAACGCGTCGCTGAGGAATTCATGGGTCGCAGGAAATGGAAACATTATCAAGATCAACTGACGCGCAGCCAATTGAATATCGCCGAGCAACAGCCCATATCAATAACGACGTTAGAAACAGAAACAGAAGACAGCGACTATCAGAAGCCACTGAACCACCGTTTAGCGCAGCCCAACGGCAAACATTACAACAGCAACAACAGCAACGGCACATTGCAATTTGAAGAAGAATTTGACAACAACCATACATCACAAGACCACGACTCAAGTGCAACATCACGTAGTAGCTCCGGCTCACCATCACCACCGCCAGAACCCAACGATTGGACACCGTCTGATAAGTGCAATTTCTGTGTTAACGGTCGCTTGCTAACGGTGAACGCCAAAGGCGAATTGGTGGCCGAAACGACGGCCACCGCGTCTATACACAATTGTAACAACAACAACAACAACATCAACGGCATAACTGAGCATCAGCACGACAGCGACAGCAACTCGAGCGCATCACTGCACAATAGCTCCAGAAATATCCACAACAATAACAACAATAAAAACAACAACAACAAGCATAGAGCACGCAACGGAACAAACGCTACCACGACGTCATCATCAGCGAGCACAATTGAACTTTACAAGCTGTTCACCCAGCAAGCAGCTGAAATGACATCGATGGAATCAATGGCCGCCAAACTGGCACAGTTCACAATGATGGCCGATTTCAATTTGATGATCAATCAACAACAACAACAGCAACAACATGCTAACTCGGTAACACCAACTACCTCGGAAGTATCTGCCGCCGCCGCCAGTCCCGCACTCAAAGACACACCAAGTCCCAGTGTGGATGCACCCTTGGATCTAAGCAGCAAACCATCGCCAAATTCATCGATAAGCGGCGATATTAAGACAGCCAGAGCTCTGTCTGAGTGTGCCACGCCCATTTCAGCAGCACGACACAACTACAATCACGAGGATCTGAATATTGCGCTGCAGGATGTGCTGGTCAGTAAGCTGGCCACACGCAAATCATCCAAGGATTATCATGTGCCGCGCTCCACGCTGCGCAACAAACTGTGCAAAATGTCGCTGGATGCCAAGCGACCGAATGCGCAAACGCCGCCAGATTTGCAACAGCTGCAAAACTACCATGACCTGGAGCAGGACGAACAGTCTGGCGAGGAGGCAGGCGATGGTGATAGCAATGCGTCAACGCCAGCGCCCGGCTTTCAGGAGATTGCCCAACGCATTGTGGCCAACGAGCATCTGCGCAAGCTTAACTCCATGTCTGAGCACAATGGCAGCGAGCTGGGCGATGATCTCGAGCCCGCCATGTCACCAAAGTCATTGCGGACGCCACCAACAGACATGCAAGCGGCCGCAACAGCAGCAGCTGTGGCAGCAGCAACAGCTGGTGGCACCAACAATGCCACTGGACTGCCAATTGATGCCAATGTGCTGTTGCATGCACTCGTTCTTGCCTCTGGTATTGGTGTCATACCCAAGCTGGACGAGACACAAACCCTGGGTGATCTGTTCAAATCGCTGCTGATGGCCAACACCGGCGGCATGATGAACGAGACGCTGACATCTGGGCACGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAAATGCTGCCTATCGTCGTCATTTACCAAAGTCTGAAACGCCTGAGACGAGTTCCTCGCTGGATGCCAATGAGGCGTGCGAGGATCCCATACTGAAGATTCCGTCCTTCAAGGTCAGCGGCGCACCAAGCGTCTCGCCAACGTTGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGTCGCAAGCCCAGCATATCGGTGGCCAAAATGATTGGTGGCACGGACACTTCACGTTTTGGTGCCTCACCCAATTTGCTGGCGCAACAGCATCACAGCCATCTGCCACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTGGCCGCTGGCAAGGGAACGCGACCAAAGCGTGGTAAGTACCGCAACTACGACCGAGACAGTCTGGTCGAGGCCGTCAAGGCGGTGCAACGTGGCGAGATGTCAGTGCATCGGGCTGGTAGTTATTACGGTGTGCCGCACTCAACCCTGGAGTACAAGGTGAAGGAGCGACATTTGATGCGACCGCGCAAAAGGGAGCCCAAACCGCAACCGGATCTCGTGGGGCTGACGGGAGCAGCGAATAAGATAAGCTTAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGCCCATGTTTGATGCCCCACCGCAGTTGCCCTTTCAGCCTTTCTGGGCACAGGCGAATGCTGGCGCTAACTATGGCCTGGACTTCAATCGCAATCCCGACTTTATCAAGAAACAGCTGGAAGAGGTGTTGCGCAACAGTCAGCTAGGCGTGCCGAGCAATCATCATGGTGCTCACGAGTATGCCGAGAACATGTACGAAGGCATCATTCGGAAGACGTTGAAGAATGATGTCAACGATGTGAGCGGCTATAGCAGTGGCAATGGCAATGGCAATGCGCTGCTGGATCAGTTGCTGGTGAAGAAGACACCGCTGCCATTTACGAATAATCGCAGCAATGACTACCTCGGTGCCGCCTGTTCCACATCCGAGAGCGTAAAACGTGCCGGCAGCCCGATGGGCGCCTACTCAGATATCAAACGTGAACGCCTCAGTCCAATGCGAAGTGCGGATAGTGCTAGCAGTGATGATGATCATGAGCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATGACATCACGTGACTCTGAGACGGACGCCAGCAGTTTGAAGAGCGAACAATCGCACAGCTCCTTGCCACACAATAACAAAATGATGGATCTCAATGGCAGCAACAGTGTCAAATTCGAGTCGGAACCGCCGCCACAGATGGCACAAATCTCGCCCAACACCAGCATATTGCATGAGAAGCTGGCGCAGATTAAGGCCGAACAGGCCGAAGTGCATGCGGCCAACAACGAGGAGCAGTTATAG
- Protein Sequence
- MSVEPMCDVRDEAKTKPKRRAGQSNLFAASNFAYISRAILYRWAHYIIHTVCLERVAEEFMGRRKWKHYQDQLTRSQLNIAEQQPISITTLETETEDSDYQKPLNHRLAQPNGKHYNSNNSNGTLQFEEEFDNNHTSQDHDSSATSRSSSGSPSPPPEPNDWTPSDKCNFCVNGRLLTVNAKGELVAETTATASIHNCNNNNNNINGITEHQHDSDSNSSASLHNSSRNIHNNNNNKNNNNKHRARNGTNATTTSSSASTIELYKLFTQQAAEMTSMESMAAKLAQFTMMADFNLMINQQQQQQQHANSVTPTTSEVSAAAASPALKDTPSPSVDAPLDLSSKPSPNSSISGDIKTARALSECATPISAARHNYNHEDLNIALQDVLVSKLATRKSSKDYHVPRSTLRNKLCKMSLDAKRPNAQTPPDLQQLQNYHDLEQDEQSGEEAGDGDSNASTPAPGFQEIAQRIVANEHLRKLNSMSEHNGSELGDDLEPAMSPKSLRTPPTDMQAAATAAAVAAATAGGTNNATGLPIDANVLLHALVLASGIGVIPKLDETQTLGDLFKSLLMANTGGMMNETLTSGHEXXXXXXXXXXXXXXXXXXXXXXXXLNAAYRRHLPKSETPETSSSLDANEACEDPILKIPSFKVSGAPSVSPTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRKPSISVAKMIGGTDTSRFGASPNLLAQQHHSHLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAAGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPDLVGLTGAANKISLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPMFDAPPQLPFQPFWAQANAGANYGLDFNRNPDFIKKQLEEVLRNSQLGVPSNHHGAHEYAENMYEGIIRKTLKNDVNDVSGYSSGNGNGNALLDQLLVKKTPLPFTNNRSNDYLGAACSTSESVKRAGSPMGAYSDIKRERLSPMRSADSASSDDDHEHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMTSRDSETDASSLKSEQSHSSLPHNNKMMDLNGSNSVKFESEPPPQMAQISPNTSILHEKLAQIKAEQAEVHAANNEEQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -