Basic Information

Insect: Scaptomyza montana
Gene Symbol: -
Assembly: GCA_018904305.1
Location: JAEIGR010000002.1:10439256-10440335[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.016 1.2 9.8 1.8 1 23 70 93 70 93 0.97

2 8 0.028 2.2 9.0 0.3 1 23 98 124 98 124 0.92

3 8 9.6 7.4e+02 1.1 1.0 1 17 130 152 130 159 0.59

4 8 0.035 2.7 8.7 0.0 1 22 219 240 219 242 0.90

5 8 1.2 93 3.9 1.7 5 23 251 270 247 270 0.90

6 8 0.00013 0.0099 16.4 2.5 1 23 276 299 276 299 0.96

7 8 1.2e-05 0.0009 19.7 1.0 1 22 304 325 304 329 0.92

8 8 8.6 6.6e+02 1.2 1.0 6 19 337 350 332 355 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.016	1.2	9.8	1.8	1	23	70	93	70	93	0.97
2	8	0.028	2.2	9.0	0.3	1	23	98	124	98	124	0.92
3	8	9.6	7.4e+02	1.1	1.0	1	17	130	152	130	159	0.59
4	8	0.035	2.7	8.7	0.0	1	22	219	240	219	242	0.90
5	8	1.2	93	3.9	1.7	5	23	251	270	247	270	0.90
6	8	0.00013	0.0099	16.4	2.5	1	23	276	299	276	299	0.96
7	8	1.2e-05	0.0009	19.7	1.0	1	22	304	325	304	329	0.92
8	8	8.6	6.6e+02	1.2	1.0	6	19	337	350	332	355	0.87

Sequence Information

Coding Sequence: ATGTCTCTTGTGCGCATATTACCAAAATCCCCAAGTGCCAAAAGAAGTAATTATAGAACTCCCGCAACAGCTCGTGCCCCGAAAAGGAAGAGCAATAAACTTCCATCTGGACGCATTTACCACTGTCACTCCTGTTTGGTCGCCTTTCCGCGATTTCTTGAGTGCAAGGAGCACGAACAGCTGTGCGTTGCACAAATTGCCAGCCTGTTCATATGCAAGTACTGCCTAACTATGTACGGTGACAAGCAGCTACGACAGCGTCACATACAACGCAAACACACCGACGGTCGCTATATGTGCTTGCAGTGTGGCACAGCCGGTAAGCGCTACAGTTCATCCACATATCTCTACAAGCATGTGGTGTCCTGGCATGGCGAGCACTCGTTGTTCTACTGTGCCATGTGCGAGAACAACTGCAACGATGCAAAAACGTTTAGCCGCATGGATGGACTGATATGCCATGCAGATATCGAGCATGGTCTATCCATCGAGGGACAGAGCATTGTGGACGAGACGGAAGATCTGGAAATGCTAGAGGAGAACATTGATGAGCTGTTGCCCACCGTTGATTGGGACGATGATCTCACGTTTGGCTGGCCAATAGATTTGGACAAGGAGTCGTGCTTTGACGACCCCAAACTCAAGCCCAGCGCTTATGTTTGTCCAATTTGTGCCAATGGGTTTAGTGGCAGTATCAGCCTGCTTAACCACGTTGGGCAGGCACATGAACGAAACATACTCGAATGCATCTTTTGTGGCAAATCGCACAAGAGTCGTGAGTCAGTACGCTCCCATCTAGAGCGCCAGCATGTCCTGCTGCGCTCCCACATCTGCGACGTGTGCCAAGCAGACTTCACAACCGCAGATCATCTGTTGAAACACAAGAGAAGCTATCATCTGGAACGTGCGCACATCTGTTCCAAATGCGGCAAGTCCTTTGCCCAAATCGGTCATCTTAAGGAGCATCTCCTTACCGAAAGGGGCCACGTGAAACATACCTGCATTCCGTGCAATATACAATTCTTTCGCTTCATTGATCTTAACCGACACAATGTTCTGAAGCACCCCACAAATTCCTAA
Protein Sequence: MSLVRILPKSPSAKRSNYRTPATARAPKRKSNKLPSGRIYHCHSCLVAFPRFLECKEHEQLCVAQIASLFICKYCLTMYGDKQLRQRHIQRKHTDGRYMCLQCGTAGKRYSSSTYLYKHVVSWHGEHSLFYCAMCENNCNDAKTFSRMDGLICHADIEHGLSIEGQSIVDETEDLEMLEENIDELLPTVDWDDDLTFGWPIDLDKESCFDDPKLKPSAYVCPICANGFSGSISLLNHVGQAHERNILECIFCGKSHKSRESVRSHLERQHVLLRSHICDVCQADFTTADHLLKHKRSYHLERAHICSKCGKSFAQIGHLKEHLLTERGHVKHTCIPCNIQFFRFIDLNRHNVLKHPTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01321479; iTF_01322990; iTF_01320751; iTF_01323695; iTF_01328175; iTF_01325972; iTF_01327476; iTF_01322267; iTF_01326781; iTF_01325247;
90% Identity: iTF_01322267;
80% Identity: -