Smon018883.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza montana
Gene Symbol
RREB1
Assembly
GCA_018904305.1
Location
JAEIGR010000020.1:1038964-1045578[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.034 2.6 8.8 0.8 1 21 241 261 241 263 0.93
2 13 0.00031 0.024 15.2 0.2 1 23 273 295 273 295 0.98
3 13 7.5e-05 0.0058 17.1 7.3 1 23 301 323 301 323 0.98
4 13 0.22 17 6.2 1.7 2 20 544 562 544 564 0.93
5 13 0.015 1.1 9.9 0.2 1 23 718 740 718 740 0.97
6 13 1.2e-05 0.00088 19.7 0.7 1 23 750 772 750 772 0.99
7 13 0.00078 0.059 14.0 2.0 1 23 778 801 778 801 0.97
8 13 0.0028 0.21 12.2 2.0 1 23 1067 1090 1067 1090 0.95
9 13 8.1e-05 0.0062 17.0 0.3 2 23 1435 1456 1434 1456 0.97
10 13 0.14 10 6.9 6.3 1 23 1462 1485 1462 1485 0.97
11 13 8.8 6.7e+02 1.2 3.4 1 23 1598 1621 1598 1621 0.78
12 13 0.0079 0.6 10.8 0.5 3 23 1683 1703 1681 1703 0.96
13 13 0.0012 0.095 13.3 4.8 1 23 1709 1731 1709 1731 0.99

Sequence Information

Coding Sequence
ATGCTGGCCACACACCAACACCAACAACAGCCAACAGCTGCAACAGCAACAACAACAGTAACACATGATAACGAAGATCGAGATTTGGAGCGACAGCGACGTGATTCAAGCACCTCAGAATCCTCGCTAGAACATTTGGATTTGGGTTGCACACCCAAAAAGCTTAGTAGCAGCAGCGGTGCACCACAGCCAACGTCGACGCCGCACGATGCCACAGCAGCGACAGCGTCTTCGCGCAAACGCAAACTGCGACAGCAACATAATCAGCAACAGCAACAGTTGCCGCTGTCCGATGAGGAGCAACAGAAGCAGCAGCAACTGTTTGATCCCTCCGCGCAGCGAACGCGTCACAAGCAGCGGCGCAGCGTAATCGCAGCCGCTGCCAGTGCCAGCATCGTTGTCGACTATAGCGCCAGCGGCGACGCCAGCTCACTGCGCAAAAAGTTTCGCCTAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAACAAACTTCAAGCGTTAGCAGTTCGGGTGGCTCATCGCCCCAGGGTCTCTCCTCGTGCCTATCGAGCGCCGAATCAGGTATCGGTGCCGGAGATGAGCACATGAAATACCTGTGTCCCATCTGTGAGGTTGTTTCGGCCACGCCCCACGAATTCACCAATCATATACGTTGCCACAATTATGCTAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCTAAGGTTCTCTCATCGGCGTCCTCCCTAGATCGTCATGTCTTGGTTCATACGGGAGAGCGTCCGTTCAATTGTCGCTATTGCCATTTGACCTTCACCACAAACGGGAACATGCATCGTCATATGCGCACACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACTACTGGCTCGGGATCGGTTGGACAGTTGTTGCCAGCTCGGGCTGAGAGCTATGAGAGTGATGCCAGCTGTTCGACAGATGTGTCCAGTGAGGCAAACAGTCACAGCAGCAACAGTAATCACAACAACAACAACAACAATAGCCAAAAAGCAAACAACAACAATAACAACAACAATGAGGAGGAAACAGAGCTGATTGAGGGTGAGCTTAAGCAGCGACGCCGCAAAACGACCTTGAACAACAACAGCATCGTTAGAGAAGATCAGGATCGGGTGGACGAGGTGGATGACCGAGATGATGATTCGAATGCGGATAGCGGTGATAGCGTTGCCCAGGTCATAACCAGCACACCGGATGTGGCAACTCTGCTCGCTTCGGGTGGCACCTCACCCACCCACTCGCAATCGCCCTCACCGCCCCTACGGCTGCTGCAGAGCTGCCCGGCCTGCAATATGGGTGAATTTGAATCCGTGCCAGCGCTCTGCGCTCACCTAGATGCCGAGCATGCGGATATACCGGCCAAGTGCCGGGAGTGTGAGGTCATCTTTGCCACACATCGACAGCTGCAGGCGCACAGCTGTCGAGGATTACCGCCGCTCCTCGGTGCTAGTTCCTCCCCGCTGCACAGGCACGAAGAGGACGAGGAGGAGGACGACGAAGATGACCGCTGCCGCCGACAGCAACACCAAGAGGATGAGGAGGATGATGATGATGGGGAGGAGAAGGAACAAAAGGATCAGTTAGAGCAACGAGAATGTGAAGATTTCTTTCAGCAACTGTACCTTAAAAATAAAGACTCAACAACGACCCTACTACCCTCTCCCATCAAACATGAACCGACGGATCAGCGTCAGGATCTAGCCGATATCCAAAGCATTCTCAACATGACCAGCTCCAGCTGCACTTCAAGTTTCTTGCGCAACTTCGAGCAATCGGTGAATACACCCTGCTCCAGCCAGTACAGCGTTGATGGTCGTGATGGCGAGGAGGAGGCACAGGACGCCTTCACCAGTGAATTCCGACGCATGAAGCTACGCGGTGAATTTCCCTGCAAACTATGCACGGCCGTCTTTCCCAACCTGCGAGCTTTAAAGGGACACAATCGCTATCATCTATCGGAGGTGGGAGCTACTGGACCCTTCCGTTGCAACATGTGCCCCTATGCCGTCTGCGACAAGGCAGCCCTGGTACGTCACATGCGCACCCACAATGGTGACCGTCCGTACGAGTGTGCCGTCTGCAATTATGCCTTTACCACCAAGGCCAATTGTGAGCGACATTTACGCAATCGTCATGGCAAGACGAGTCGCGACGAAGTCAAGCGTGCCATTGTCTATCATCCGGCCGAGGATGCCAGCTGTGAGGACAACAACAATAGGTCACGTTCCGATGCGGACCTTTTGACCGATTTGAGTGGTGGTAGTGCTGCGGGTGCTGGTGCTGGCGTTTATCGTTGTGCTACACCCACGGAGCATAGCTCTTCGGCTAGTTCGTCGCAATCACAATTAAAGCACATGTTGCTGTCAGACGCACCAACTGCGACAACACTACCAGCAGCGGCAGCAGCAGCAACAATACAGCAACCACCTCTGAAAATTCAAGTTAAGAGTTTGGATCAGCTGGTGGATAAGCCGATGCCAGCTTTGGATCTAAGCATGGATGTGCTGGACTTAAGCAAGAAGTCATCACAGCCACTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCGCAATTTTATGTTGCAACAATCACCTGGATTTCCCTTCTTTGGCTTCATGGCGCCACCGCCACCAGCAGCAGCAATTACAGCTGCAGCAGAGAAAGCAACACCAACAACAACTTCAAATGCTGCATTGCCGCTGTCGTTGCCCGTGCCACTGTCCCTGCCTCTTTCCTCCGGTGGCCCCGTCAAGATGGTCATCAAGAATGGTGTCCTAATGCCAAAACAAAAGCAACGTCGCTACCGCACCGAACGTCCCTTCGCCTGCGAGCATTGCTCGGCGCGATTCACGTTACGCTCCAACATGGAGCGGCACGTAAAGCAGCAACATCCACAATATTATGCCACACGGCAGCGCAGTGGACATCATGTGATGCGTGGACGTGCTGCATCCTCCCAGGCTCAAGCTCAAGCACATGCGGCAGCAGCAGCAGCTGCAGCAGCAATGCAACAGCAACATACCCATTCCCATCATGTTCATGCACCAATTTCGGAGCAAGTGAAATATGCAATCTTGGCACAACAGTTAAAAGCGCGCAAGGATACGGATCTGTTGCAGCAGGCACTAGCACATGGCTCCAGCAGTGTCGTTGCAAATTCTCTCCTGCATTTTGGCTACAATGCTAACAACACCAGCAACAACAAAAACGGTAACAGTCATAAGCAACAGCAGCAACAACAGTTGGTGCTAGATGATGATGAGCCGCCCAAGCTAATTATAGACGAAGATGATGAAGATGTAGAGGGATGTGTGGATGACGAAGAGGAGGAGATGGAAATGGAGGAGGAGGAGCAGGATTTTGATATGGATGAAGAGGAAGAGCAGGAAGCTGAGGCAATTGTACAGCAGCACCACCGGCCAGAGGAGAATGAAACCAAGACTAAGACTGTCCCCAAACCCATGGAGGCAGCCAAAAAAGTCGCTGAAATCATTCTCGAGCAAGCAATCAAAGAGCAAGAGGAGCATCAGCAGCCCGAGAAATCCGAGAAGCCAACACCACAATTGGAGAAACCGCAACAAGCAACACCTACGACAATGAAAACAATGATTGCCCAGGCCGAATCGGTGGCCAAATCATTGAAAGAGGTTGCCAGTTCACCATTCAAGGATGAATCTCAGGATCTGGTACCGGTGGCCAAATTGGTGGACAATGCGACCAGCAATCAGGTATCGTTCAACAGCTATTTCCGGCCCAGCGATGTTGCTAATCACATGGAACAGAGCGATGAGGAAGGTCTCGTTGCCAGCGGCAGCGCCAGTGAGAGCAACAATTCCGGCACCGAAGATGTCACCAGCTCCAGCAGCAGCTGTGGCAATGATGGCAAGAAAAAGTCCGCATACAGCTTGGCTCCCAATCGGGTCAGTTGTCCATATTGCCAGCGCATGTTTCCCTGGAGCAGCTCTTTGCGTCGTCACATCCTAACCCACACCGGGCAAAAGCCCTTCAAGTGCTCCCATTGCCCGCTGCTTTTTACCACCAAGAGCAACTGCGATCGCCATCTGTTGCGCAAGCATGGCAATGTTGAGTCCGCCATGTCCGTGTATGTGCCCACCGAGGATGTGAGTGAGCCCATACCGGTGCCCAAGTCGGTGGAGGAAATTGAGCTGGAGGAGCAGCGTCGGCGTCAGGCAGCCGAAGCTGAACAGGCCGAACGAGTACGGGAAAGGGAGCGGGAAAGAGAGCGGGAACGGGAGAAGGAGCGGGAACGTGAGCAGCAACAATTGATTCAACAATTACGTCAACAAATGGCTGCAGCTGCAGCTGCTGCCGCCGTCGTTGTCGCTGCTCCAGCTTCACCACCAACTGTTGGTAGTGTTGTTGGCGCCTTGGAGGCGAGCAGTGATCTGCCCTACAAGTGTCATCTGTGCGAGTTTTCCTTTGGTGAACGCCTGCAATGTCTCGAGCATATCAAGCAGCTGCATGCCCATGAATTTGCGCTCCTTTTGGCCAAGGGTGCAATCGAAACAGATGCACAACAACAACAACAATTGCTGACAAATTCGAATTCGGATGATGAGGCCGCGGCAGCAGCAGCAGCGGCAGCAACTGTTGCTGGCATTAGAACCGGCGGCAAATATCCCGACTATAGCAATCGTAAAGTGATCTGCGCCTTTTGTGTTCGTCGCTTTTGGTCCACGGAAGATTTGCGCCGCCATATGCGCACCCATTCCGGCGAACGTCCATTCCAATGCGAGATCTGTCTGAGGAAGTTCACGTTGAAGCACAGCATGTTGCGGCACATGAAGAAGCACAGTGGACGCAGTCATAATGGTGGTGAACTTGATCATCAATCCGATTGCTCCGATGATGAGCAGTTGTTGTCGTGCTCACCACCAACAACGCCAACACCCACCAACAACAACAGCAACACTTGCCAGAACAACAACAACAACGTGAACAACAATAACAACAGCACAAAGCAAGTGCTGCGAGAACTTTTGGGCAAAGCCAACGAGTGGCGTATTAATCGTTTGGGTGGTGGCGAGCACAAGGAGAACATTGCCGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTTAATCGGTAATCTTTTGGGTATTAGTGATCAGGGCATACTAAATAAGTTGCTCTCCTCACCAGACGAAGCTGCCAAGCTTCTCGGAGTGGAGAAGTAA
Protein Sequence
MLATHQHQQQPTAATATTTVTHDNEDRDLERQRRDSSTSESSLEHLDLGCTPKKLSSSSGAPQPTSTPHDATAATASSRKRKLRQQHNQQQQQLPLSDEEQQKQQQLFDPSAQRTRHKQRRSVIAAAASASIVVDYSASGDASSLRKKFRLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQTSSVSSSGGSSPQGLSSCLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGSGSVGQLLPARAESYESDASCSTDVSSEANSHSSNSNHNNNNNNSQKANNNNNNNNEEETELIEGELKQRRRKTTLNNNSIVREDQDRVDEVDDRDDDSNADSGDSVAQVITSTPDVATLLASGGTSPTHSQSPSPPLRLLQSCPACNMGEFESVPALCAHLDAEHADIPAKCRECEVIFATHRQLQAHSCRGLPPLLGASSSPLHRHEEDEEEDDEDDRCRRQQHQEDEEDDDDGEEKEQKDQLEQRECEDFFQQLYLKNKDSTTTLLPSPIKHEPTDQRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSVDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRYHLSEVGATGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDEVKRAIVYHPAEDASCEDNNNRSRSDADLLTDLSGGSAAGAGAGVYRCATPTEHSSSASSSQSQLKHMLLSDAPTATTLPAAAAAATIQQPPLKIQVKSLDQLVDKPMPALDLSMDVLDLSKKSSQPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNFMLQQSPGFPFFGFMAPPPPAAAITAAAEKATPTTTSNAALPLSLPVPLSLPLSSGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQYYATRQRSGHHVMRGRAASSQAQAQAHAAAAAAAAAMQQQHTHSHHVHAPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVVANSLLHFGYNANNTSNNKNGNSHKQQQQQQLVLDDDEPPKLIIDEDDEDVEGCVDDEEEEMEMEEEEQDFDMDEEEEQEAEAIVQQHHRPEENETKTKTVPKPMEAAKKVAEIILEQAIKEQEEHQQPEKSEKPTPQLEKPQQATPTTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSCGNDGKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRQAAEAEQAERVREREREREREREKEREREQQQLIQQLRQQMAAAAAAAAVVVAAPASPPTVGSVVGALEASSDLPYKCHLCEFSFGERLQCLEHIKQLHAHEFALLLAKGAIETDAQQQQQLLTNSNSDDEAAAAAAAAATVAGIRTGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGGELDHQSDCSDDEQLLSCSPPTTPTPTNNNSNTCQNNNNNVNNNNNSTKQVLRELLGKANEWRINRLGGGEHKENIADXXXXXXXXXXXXXXXXXXXXXXXXDLIGNLLGISDQGILNKLLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-