Smon006331.1
Basic Information
- Insect
- Scaptomyza montana
- Gene Symbol
- -
- Assembly
- GCA_018904305.1
- Location
- JAEIGR010000004.1:1831403-1837932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.4e-05 0.0018 18.7 2.1 1 23 261 283 261 283 0.97 2 18 7.8e-06 0.00059 20.2 0.4 1 23 289 311 289 311 0.97 3 18 0.0011 0.087 13.4 0.9 1 23 317 339 317 339 0.95 4 18 1.6e-05 0.0013 19.2 3.1 1 23 345 367 345 367 0.97 5 18 3.7e-05 0.0028 18.1 4.7 1 23 373 395 373 395 0.99 6 18 6.8e-05 0.0052 17.3 5.7 1 23 401 423 401 423 0.97 7 18 3.3e-07 2.6e-05 24.5 4.3 1 23 429 451 429 451 0.98 8 18 1.2e-07 9.1e-06 25.9 2.4 1 23 457 479 457 479 0.97 9 18 7e-05 0.0053 17.2 6.7 1 23 486 508 486 508 0.97 10 18 0.00012 0.0093 16.5 6.5 1 23 514 536 514 536 0.98 11 18 1.1e-05 0.00083 19.8 4.5 1 23 542 564 542 564 0.98 12 18 7.9e-06 0.0006 20.2 8.1 1 23 570 592 570 592 0.98 13 18 6.4e-06 0.00049 20.5 7.6 1 23 598 620 598 620 0.97 14 18 7.2e-07 5.5e-05 23.5 7.7 1 23 626 648 626 648 0.98 15 18 0.00022 0.017 15.7 9.5 1 23 654 677 654 677 0.95 16 18 7.9e-05 0.0061 17.1 0.9 1 23 683 705 683 705 0.98 17 18 0.0013 0.1 13.2 4.4 1 23 715 737 715 737 0.98 18 18 9.9e-06 0.00076 19.9 1.6 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGCAGCACGTGAGCGCTGCCAGTTCGGCACCTTCGGTGGTTTCAGCACCGGTGGTGACCACTGGCGGTGGCACCACCATCAGCTTGGGCGGAGCACCGCCGTCATTATCAAGTGGCAAACATTCGTCAGAGCATCATAAAGAGGACGGCAGCAAGCCGCCACATCACGGCATTGAAATGTATAAAGTAAACATTGAGGATATTTCACAGTTATTTACGTATCACGAAGTCTTTGGCAAAATCCATGGCGATGTGGTTAATCATGTGGCGGCGGTACATGGCAGTCAGTTGCCACCACCGCAGTTGCCACCGCCGCCCCCCCTACCGCCGCAGACGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACGACGACGGGTGAGTTGCTAATGCCAAAAATGGAGGGCGGCATCCATGGCGTCGATGGGCAGTCGAGCGTTGCGTTGGCGCCGGATGGCACACCCATTGCGACTGGTACGCATGTGTGCGACATTTGTGGCAAGATGTTTCAGTTTCGCTATCAGCTGATTGTGCACCGCCGCTACCACAGCGAGCGCAAACCGTTCATGTGTCAGGTGTGCGGTCAGGGTTTTACCACATCGCAGGATTTGACCCGTCATGGCAAAATACACATTGGCGGTCCCATGTTCACATGCATTGTGTGCTTCAATGTGTTTGCCAATAATACTAGTTTGGAGCGCCATATGAAAAGGCATTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACTTTCGCACGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACAGGCGAAACGCCGTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTCACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAAAGCTTTAGTCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACACGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCACACTGGAGAGTCGCCGCATCGCTGCTCCTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTGAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTTACACGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATATTGCACCAAGACGTTTACACGCAAGGAGCATCTAACGAATCATGTGCGCCAGCACACGGGCGATTCGCCACATCGCTGTAGCTACTGCAAGAAGACCTTCACCCGCAAGGAGCATCTGACGAATCATGTGCGCCTGCACACGGGGGACTCGCCGCACAAATGCGAATACTGTCAGAAGACGTTTACGCGCAAGGAGCATCTCAATAATCATATGCGTCAGCACTCCAGCGACAATCCGCATTGTTGCAATGTGTGCAACAAGCCCTTCACACGCAAGGAGCATCTGATTAATCATATGTCACGCTGCCACACCGGTGATCGTCCCTTTACCTGTGAGACATGCGGCAAATCTTTTCCCCTTAAGGGCAATCTGTTGTTCCATCAGCGTAGCCATACCAAGGGTCAGGAGTGCGAGCGTCCGTTTAACTGCGAGAAATGTCCCAAGAATTTCATATGCAAAGGTCACTTGGTTTCGCACATGCGCTCCCATTCGGGTGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCATCCGGATGCTATGATGCCGCCACCACCTGTGCATCCGCATCCGCAAATACCGGCTGGTGTGCTGACCCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCGCATCACTCGGCGACGACCACAATGCACACCATTCAGCAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATAAGTGATCCGAGCGCGCTGGCACGTGCTGCCATGCAGCTGCAACATCTGCCCACAAATGTTGAACAGCATCCGGTGGTTTACTAG
- Protein Sequence
- MQHVSAASSAPSVVSAPVVTTGGGTTISLGGAPPSLSSGKHSSEHHKEDGSKPPHHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHVAAVHGSQLPPPQLPPPPPLPPQTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGELLMPKMEGGIHGVDGQSSVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFNCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISDPSALARAAMQLQHLPTNVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -