Shsu016579.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- -
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000002.1:13933915-13938732[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00076 0.062 13.9 0.4 1 23 145 167 145 167 0.97 2 13 5.4 4.4e+02 1.8 4.5 2 23 177 199 176 199 0.94 3 13 0.00012 0.0098 16.4 1.3 1 23 393 415 393 415 0.98 4 13 9.9 8.2e+02 1.0 0.8 1 23 421 444 421 444 0.87 5 13 1.4 1.2e+02 3.6 0.4 1 23 469 492 469 492 0.91 6 13 0.0028 0.23 12.1 2.3 3 23 750 770 749 770 0.95 7 13 0.059 4.8 8.0 1.5 1 23 776 799 776 799 0.98 8 13 0.0026 0.22 12.2 0.7 1 23 879 902 879 902 0.97 9 13 0.066 5.5 7.8 2.0 1 23 1081 1104 1081 1104 0.91 10 13 0.00092 0.076 13.6 6.3 1 23 1117 1139 1117 1139 0.98 11 13 0.00059 0.049 14.3 3.5 2 23 1172 1196 1171 1196 0.89 12 13 0.17 14 6.5 0.1 1 23 1201 1223 1201 1223 0.95 13 13 0.17 14 6.5 0.9 1 23 1229 1252 1229 1252 0.94
Sequence Information
- Coding Sequence
- ATGGCGTACAAGCGGGTGAAAACAGAGGACATGGAAATAAATTACAAATTTGCATGTCGCTGTTGCCTCAAAACCGAGGCGGAATTTTTCAAGCTGGACTCCCTTATCGACTGTGGGCAAGGAGATAATGACGCGTGCATCACTAAATTACCTCTGCAACGTTTATTGTTATTCTGCATGCGCACCGAAAATTTTCCCGAGTTACCGCAATATATATGCGTGGAGTGCAGGAAAAGCCTACAAATATCTTATTATTTCATACAGAACGGATTGCGTGCTCATGAAATATTGTGTCGCAAGCTATGCCCCGGAGTGCTAAAGACCAAAACGCGGTTCAATGGGCAACAGTTATCGCCCAGGCTTGAGCCAAAAGCTGACGCGACACTGTTTAACACGCAAGCGGAGCAGAAGCTACAAATGTCCACAGAGCGACATGAATGCGATATATGCGGTGCTTTTGTTAGCAATCGTTTGGAGCTCAGGCAACATTTACGCCTACATGAAGCCCACACAGGGCCGTCACGTCAGCAGTGCAAATTGTGTAGTTTTGAAACGTTTAAACATCGCCAGTTGCTTGAGCACTATCGCAAGTCGCATGGCATGACCGCCGACCAAGCTGACCAACAGATCAAAATTCGAAAAGCGTCGCTGACTTCTGGTAGTCCAACAAGACCAGCTATGGAAACTCGCGAGACATCTCCATCAGACGATGGTAAGGTGTTTTGCACACTAGAGGACATGGAGCTACTTATACCAACAGTGCTGACGCCCGAGGATTTTTTGCGTCCACAAGTGGATCAGTTGCATGATATCGAGGATCAATTAGCAGACTTGGTGTCCATTGATACGTCGTCTGAGCTGCCAGAGGAACCGACGATAAATGCACTTGGGAATAGTCCCAATGTAAGCGTAGGTGCCGAGTTTCTAGTAATGCCAGATGGTTCTTTGCAACAAGTTAATGATGCCGGTGTGGTTTTCGAATATATTGATGATAGCAAAAATGCCAGCACGACAACGAACACAACATTAAAGAGCCTGTTGAGTGATTCTAAAACAGATTTAACTTTCGATGCGATGGATATTGATTTGAGTCATATGGTTGCCGATGATTCGCTGCCACAAATAATAGTTAAACCCAAGCCACGACCAGCGCCGGCATCAACTGGCGCCTTAAAACACAAATGCAAACTGTGCCCCAAAGCATTTCCGACGGTGGCTCGCCTAAAATCTCATCAGCTAACACATAGCCATTTGCCGAAATTCTTTTGCGACCAGTGCTCTTACTATTCGCTGCGCAGCGCCGATCTCATCCAGCACTATACGAACGAGCATAATGTATGCATTAGTAAAGCCAGTCAAGATGAGACATCGCCAACGACGATGTTGACGGATAGGAATCGCATATTTTCCTGCGACATGTGCTTGTTTGAGACGCCAAGTGGTAGCCAACTCCGTGTGCACTACAGCGATAAACATATGATAGAACCTAATGAGATACAGTTGCGGCCTAGCTGGATCAAGGAACGGGATAGCAAATCGACTCCAAGCAGCTCCAATAACGTCAAACAGCCAGATATTCCGCTGGGCATTAAATATCCACCAATGACAACACAGTCTGAAGCAGTTTCTACGACGACGACAACACCAATGGACCAGCAGCCTCAAGCAACAACCACAACGGAAGTGACAGCAGATGGAATAAATGTTGTGGTGAATGCTAGCTCATTATTTTATGCAACTGGTGCCGAGAGTGCAACAACAACGGATCCAAACACATTTGGACTTTTTCCTGCGCCTACTTTTGTCAATAGCCTGACACCAAGAACAACAGGAGCAGCGGCCACAAAAACACCGCCGGCATCAAGCAGTCAGCCACCGTCAGCCGGAATATCAAGCACAACTCCCAACACTAGCATTTTTGGTGACATGCAGGAATTCATAGATAACACAGATGTGGCAGCTATTTGCACAATACCCGCTGACGATATGCCTGTAGTTGATGGCGATGACATTGTCATTGATAACAATAATATAAGTTTGGACTTCGATGCAGAAAATCTCTTTGGCGAATTTGATGTTGGCGAGGCAGGCGAAGATGAGGAAGAAGAAGATGAGGATGATGCCGAAAATGATGATGAAAATGACAATAATGAAGCGGCTGCCGATCAAAATTTATTGCTCACCAGCGACGATGACGATGTGGATGACTTTGATGACGAACAACCAGAGCATCTGCAGAAACCCATGTGCCTCCTTTGCAACAAAAAGTTTACTAGCCAATATAGATTCGAGAATCATATGTTTTTACATCGCGGCGTGGCACCTTATCGCTGTGAGCTATGTACCAATCTGTACAATATGAAACGTCTGCTCATAAAACACTACAAAACGGTCCACAAAAAGATGCCCACTCGTGACATGGTGCAGGCCAAGGGCGATAAGGTATCTGTTCCACCGACAGCCATCGAAAAGATAATAATTCAGCCTGCCAAATCTCCTTTCTTTTTGTGCGCCAAGTGTCCTCATGAATGTGAACAGGAGATCGATATCCGCAACCATTTATATTCGCATCACGGCATCACCGATGGTGGACCTATGAAAAATAACGATACGTTTATCTATCGCAAACTGCCCTACGAGTGTCCACGGTGCATCCGATCCTTTGCTGCAAAACGAACGCTTACACGCCACTTGCAGCGTAGCCATTTACTGGATACGATCATTGAGTTGCAGGCGCCTCAATTGACAACTAGTTCAGCGGCAACCGCTACCACATCGACGGCAACAACAACGTTGCCGAACAATGCCAGTGATGGCAACATAACGCCGATTGATGCTGGCTATAGCGAGAGCAATGTAGATCTTGGCGATGAGGATAATAAATGCGAGAAGCAGACGGTGAAAAACGACACAGGGTCAGAAACGGAAAATTCAGATACAGATATGGAAATAAAAGCAACACAAAATAAAAAAGCAGAAACAACACCTATTAAATCAGAAGCAGCCGCAACAACATCTGCAGGCTCAACACTCTTTCCAACGCCCACGCCATTTGACTTTGATCTAGACTTTATTGGCAACGATGCACACGCAACGTCTCTCAAGAACAACAATGACGACGACTTCAATGACACATCCCTTCCAAGTATGCTGTTAAATGGCAGCGATAAACTATTGCCGGTCTCGTTGGAGCCATCGCACATTAAAGACTCACGATCGCGTCTGCCGCGTACGCCAATATATGTCTGCAAGCAGTGCAATCAGACCTTTGATGAGCTCTGTAAGCTGTTGCAGCACGAGCTGTTGCAACATTCCAGCGGCGTTGCATCGCCGCATACCAATTACCATCATCAATGCAAAATCTGTCATACTTCCTACCGCACTGTGACGCTACTTAATTATCATATGAAACGACATGCGGCAGATAAAGTTCAGTGTAATCAAGAGTTCAAAGCGTCTCATCCCATCGCGGACTTGAATCGAAAATCGGGTAATCGGCTTAATGCGCCTGTTAAGTGCGGCATAGATGGCTGCCAGAAGACCTTTAATTATAAACATCATTTAAAGCGACATCAGACAGCAACACATACTCCGGTAAAATATATATGTCCGGAGTGCGGACAGGATATGTTGACTAGTTTGTATCTGAGGAATCACATGTCCATGCACAAGGGCACACACTCGTACAAGTGTCCAAAGTGCGTGCGAACCTATTTGCGAAAAAATCCATTTCTCCGACATGCGCTACGTGAACACAAATGGAAATTGACGGAAGACGAACTTGACAAAGTATACTGCATCAATGATTCATCGCCATTAATTAAAATGCGCAATGCCAAATTGGAGGATGATGAGAGTGATTAG
- Protein Sequence
- MAYKRVKTEDMEINYKFACRCCLKTEAEFFKLDSLIDCGQGDNDACITKLPLQRLLLFCMRTENFPELPQYICVECRKSLQISYYFIQNGLRAHEILCRKLCPGVLKTKTRFNGQQLSPRLEPKADATLFNTQAEQKLQMSTERHECDICGAFVSNRLELRQHLRLHEAHTGPSRQQCKLCSFETFKHRQLLEHYRKSHGMTADQADQQIKIRKASLTSGSPTRPAMETRETSPSDDGKVFCTLEDMELLIPTVLTPEDFLRPQVDQLHDIEDQLADLVSIDTSSELPEEPTINALGNSPNVSVGAEFLVMPDGSLQQVNDAGVVFEYIDDSKNASTTTNTTLKSLLSDSKTDLTFDAMDIDLSHMVADDSLPQIIVKPKPRPAPASTGALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFFCDQCSYYSLRSADLIQHYTNEHNVCISKASQDETSPTTMLTDRNRIFSCDMCLFETPSGSQLRVHYSDKHMIEPNEIQLRPSWIKERDSKSTPSSSNNVKQPDIPLGIKYPPMTTQSEAVSTTTTTPMDQQPQATTTTEVTADGINVVVNASSLFYATGAESATTTDPNTFGLFPAPTFVNSLTPRTTGAAATKTPPASSSQPPSAGISSTTPNTSIFGDMQEFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLFGEFDVGEAGEDEEEEDEDDAENDDENDNNEAAADQNLLLTSDDDDVDDFDDEQPEHLQKPMCLLCNKKFTSQYRFENHMFLHRGVAPYRCELCTNLYNMKRLLIKHYKTVHKKMPTRDMVQAKGDKVSVPPTAIEKIIIQPAKSPFFLCAKCPHECEQEIDIRNHLYSHHGITDGGPMKNNDTFIYRKLPYECPRCIRSFAAKRTLTRHLQRSHLLDTIIELQAPQLTTSSAATATTSTATTTLPNNASDGNITPIDAGYSESNVDLGDEDNKCEKQTVKNDTGSETENSDTDMEIKATQNKKAETTPIKSEAAATTSAGSTLFPTPTPFDFDLDFIGNDAHATSLKNNNDDDFNDTSLPSMLLNGSDKLLPVSLEPSHIKDSRSRLPRTPIYVCKQCNQTFDELCKLLQHELLQHSSGVASPHTNYHHQCKICHTSYRTVTLLNYHMKRHAADKVQCNQEFKASHPIADLNRKSGNRLNAPVKCGIDGCQKTFNYKHHLKRHQTATHTPVKYICPECGQDMLTSLYLRNHMSMHKGTHSYKCPKCVRTYLRKNPFLRHALREHKWKLTEDELDKVYCINDSSPLIKMRNAKLEDDESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -