Shsu013836.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- ken1
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000307.1:5219222-5221498[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.7 8.1e+02 1.0 0.2 11 21 176 186 174 187 0.85 2 13 0.2 17 6.3 6.3 3 23 228 248 226 248 0.96 3 13 0.0063 0.52 11.0 2.0 1 23 254 279 254 279 0.94 4 13 0.00025 0.021 15.4 2.5 1 23 286 311 286 311 0.96 5 13 0.0011 0.091 13.4 5.1 1 23 321 343 321 343 0.97 6 13 0.00019 0.016 15.8 1.8 2 23 351 372 350 372 0.96 7 13 0.0063 0.52 11.0 0.5 1 23 378 400 378 400 0.97 8 13 0.025 2.1 9.1 1.9 1 23 406 429 406 429 0.97 9 13 0.017 1.4 9.7 4.1 1 23 435 457 435 457 0.95 10 13 0.008 0.66 10.7 2.3 2 23 464 485 463 485 0.96 11 13 0.00015 0.012 16.1 0.8 1 23 574 597 574 597 0.96 12 13 0.006 0.5 11.1 3.0 1 23 603 625 603 625 0.96 13 13 1.6e-05 0.0013 19.2 4.0 3 23 633 653 631 653 0.97
Sequence Information
- Coding Sequence
- ATGCGTGAGGAGAAGCAAATCTCCATACATGCAGTATGTCGAACTTGTTTGACAAACTTAGAAAACTCTGCAGCCTACGATTTGTTTGAAGTTCCTGAACTTGCCAAGAAACTGTGTACGTGCACTTCAATCTTAGTGGAAAAACAGGATGGGTTTCCGCAAAACCTTTGCCCCAATTGCTATACCAGATTAAACGATTTTCATGATTTTCGGAAACAATGCGTGGATTCTGTGAAAAAGCTAGAGGGTTTGCTATCTAGTAATTACTTTACAACCCAGAATGACGGCTTTAATGTGCTAAATGTCGAGGAAGATGAGAACATTAGTTTCGATCCACTTCTAAATACAAAAATTGAGATAATTGAAAATGAGGAAGTTGTATTTAAAATGCTAGAAGACGTTGACAAAGAAGTGGAGCAGGAACAGATGGTAAGGGACTCCTCCAGGAAAAGCAAAAATAACAGCAATTTTATTGATTTACAATCTGAAGGGAATAGCAGCGACTCTGACGATGCATTGCCTCTCTCCCGATTAAGAAATCTAACAAAGCACAGAAAGAAAGCTGCGGATGACTGTAGCTCAAGCTCTGAATCGAATGTTGATTCCGAGGCAAAATCTACGACAAAACCAAAGCGAAAGCGGATCCCGCCCGCTGACCGTGAGCTGCGTCATCTAATAGATTGTCACATATGCCATGAAAAATTCAAGAAGACGATTCGCTATGAGGAACACATGAAGCATCACAACGATTTACTCCCATTCCAGTGCACTGTTGAAACTTGTAAAAAGGGATTCACTACTGGCGCCGGTTTGCGACATCACATTGACCACTCGCATTTGGAGCTCTGCGAACTGCACACCTGTACTGTGGAAGGATGTGACAAGGCATTTCCTCGCACTCGAATGCTCACACATCACCTAAAAAAGGTCCACAACATTGCAAAGCCGGAGAACCGTGATCATCCTTGCACGGAGTGCAAGAAGGTCTTTCGTTGTCCAACAGCTCTTAAAAAACACATGTACAAACACACTGGAGAGGAGCTGCCGATTTCCTGTAACATCTGCAACAAACGCTTTCACATTAACAGTGAGCTTAGAGACCATCTTTTGCGTCATGCTGGTGTCAAGAATCATGTGTGTCCCTACTGCGGCGTCGGTAAAACTACTCGACAGGAGTGGAACAAGCACATATTGACCCACACCAAGGAGAAGCAATTCCAGTGCCGCCAGTGCGATCATGCTTCGCACAACAAACAGGCTCTGGCCAATCATGTCAAGGTGGTGCACATGAAGATCAAGAACTTTGCTTGTCAATATTGCGGCAAAACCTTTGGGAAATCGCATGCCTGTAAAATCCACGAAAGGCTTCACACTGGCGAAAACTGTTGCGAGTGCAAGATTTGTGGCAAGATTTTCCTATTCGAGAAGAGATTGACCAAGCATCTGCAGATCCATGAGAAGCGTGAATTAGTACCGCCTGCAACCATCGTTAAACCTCAGGAAGATGGAAGTACACAAAACACACAGAATACTAGCCAGGAGGTGACTGAGACAGTAGACGTAAAGCCTGTGCCAATTGTTCCTCCCAAGCCGAAGAGTTCTCATCGAGTTGAGCGTGTGGATATTTCACAGCTGGCGGGCACCTCTGTCAATCCAATATCTTCGGTATCGGTGCCTTCATGGTCGCCACAAGTGAACTTTACAAAGAAAGAGGGCCAGCACATTTGTCCAGGATGTGGACGTGGCTTCAATCACATTGGGAATATGAAACTGCACTATAAGGTCATACACGAAAAGATTAAGGATTATGCGTGTCGCTTTTGCCCTAAACGCTTTGGCAAAGCCCAATATCTTCGTCATCATGAATATACACATACGGGCGAGAGGCCCTACGGCTGCAAAATATGCGATAAGCATTTTAGCCATGGATCATCGTTGAGGAAGCATATGATTTCACACAACAGACCGCCAAAAGCTCCAAAGGGCCCGCCTAAGCTAAAAGAGCATCAAATGCAAAAAACCGAACTGAACAAGCGTCCACCAAAAAACTATGAACAGTACAACGACCCAGCTGCAGAACGGGCTGCTGCTACCGCAGAATTGCTGGCTCAGCAGCTTGAGGAGAGTGAGGCCAAGCGAAAGGCGGAAGATAAGGCTCGAACGATTCAAGAGGCCGCATGCGAGCAGCTGCAGAAACTGCAGAAGGAACAGCTTATCGAAAAAATATCCTATGATAGCTTTCAAGTTAAAAGGTCAGAGAGGAGTATAGCTAGATAA
- Protein Sequence
- MREEKQISIHAVCRTCLTNLENSAAYDLFEVPELAKKLCTCTSILVEKQDGFPQNLCPNCYTRLNDFHDFRKQCVDSVKKLEGLLSSNYFTTQNDGFNVLNVEEDENISFDPLLNTKIEIIENEEVVFKMLEDVDKEVEQEQMVRDSSRKSKNNSNFIDLQSEGNSSDSDDALPLSRLRNLTKHRKKAADDCSSSSESNVDSEAKSTTKPKRKRIPPADRELRHLIDCHICHEKFKKTIRYEEHMKHHNDLLPFQCTVETCKKGFTTGAGLRHHIDHSHLELCELHTCTVEGCDKAFPRTRMLTHHLKKVHNIAKPENRDHPCTECKKVFRCPTALKKHMYKHTGEELPISCNICNKRFHINSELRDHLLRHAGVKNHVCPYCGVGKTTRQEWNKHILTHTKEKQFQCRQCDHASHNKQALANHVKVVHMKIKNFACQYCGKTFGKSHACKIHERLHTGENCCECKICGKIFLFEKRLTKHLQIHEKRELVPPATIVKPQEDGSTQNTQNTSQEVTETVDVKPVPIVPPKPKSSHRVERVDISQLAGTSVNPISSVSVPSWSPQVNFTKKEGQHICPGCGRGFNHIGNMKLHYKVIHEKIKDYACRFCPKRFGKAQYLRHHEYTHTGERPYGCKICDKHFSHGSSLRKHMISHNRPPKAPKGPPKLKEHQMQKTELNKRPPKNYEQYNDPAAERAAATAELLAQQLEESEAKRKAEDKARTIQEAACEQLQKLQKEQLIEKISYDSFQVKRSERSIAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01320688;
- 90% Identity
- -
- 80% Identity
- -