Basic Information

Insect: Scaptomyza hsui
Gene Symbol: -
Assembly: GCA_018152825.1
Location: JAECXO010000002.1:5743650-5745639[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.28 23 5.8 0.1 2 23 251 273 250 273 0.96

2 9 6.5 5.4e+02 1.5 0.4 6 23 282 299 282 300 0.84

3 9 0.00016 0.013 16.0 1.6 1 23 305 327 305 327 0.99

4 9 0.032 2.6 8.8 4.1 1 23 336 358 336 358 0.95

5 9 7.6e-05 0.0063 17.0 0.3 2 23 367 389 366 389 0.95

6 9 0.00049 0.04 14.5 0.0 3 23 397 417 396 417 0.96

7 9 0.00076 0.063 13.9 1.3 2 23 426 448 425 448 0.97

8 9 2.1e-07 1.7e-05 25.1 1.2 1 23 485 507 485 507 0.98

9 9 4.5e-06 0.00037 20.9 4.1 1 23 513 536 513 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.28	23	5.8	0.1	2	23	251	273	250	273	0.96
2	9	6.5	5.4e+02	1.5	0.4	6	23	282	299	282	300	0.84
3	9	0.00016	0.013	16.0	1.6	1	23	305	327	305	327	0.99
4	9	0.032	2.6	8.8	4.1	1	23	336	358	336	358	0.95
5	9	7.6e-05	0.0063	17.0	0.3	2	23	367	389	366	389	0.95
6	9	0.00049	0.04	14.5	0.0	3	23	397	417	396	417	0.96
7	9	0.00076	0.063	13.9	1.3	2	23	426	448	425	448	0.97
8	9	2.1e-07	1.7e-05	25.1	1.2	1	23	485	507	485	507	0.98
9	9	4.5e-06	0.00037	20.9	4.1	1	23	513	536	513	536	0.98

Sequence Information

Coding Sequence: ATGTGTTTTCTGTGCACCCAGTGCACAGATAACTCTAATGGTATTATCCACTTTGGTACACCGGAAGCTGAATTGCTTGATATTAATCAGATCATAGAAAAACACTTTTGGTTGCGGACCAAGGACGTCACTGGACACATTTGTGGAACTTGCTGGGACAAATTGTATGCATTCCATAACTTTTATACAAGTGTAGAACTGGCACACAAGAAGCTACTACAAAGCACAAACGAAATAACAAAAATAGTCGAAACGATCCCAACGCTTGCGGCGGAGGTGGTTGCAGGGGCAGCGGTGTTGCCACCTTTACAAGTGGAGCTGAATGAGAATGTGGTTAAGCAGGAGAATCGACTTGGCGACAGTGTGGCGGCTTCGGTAAAGCGCAGGCGTGGACGTCCCCGCAAACAGTTTCACGACGAGACGGCCACAACAATTGATAGCAACGAATTTAAAGCTGTGCTAGAACAGATCAATCTGAATGAGATCAAAATTGAGTTCCCGGAAGCCGATCTCAGCATAGCCGATGTGCTTGATGATCAGGAGGAACAAAATATAACCGATTACCTTCATCAAAGCGAGATTGAAAGCGAAGCTGCTGAAGCCATTACCAAGCCTAAGCAAAAAAGGACGCGAAAGATAAAAAAACGCCGCACTAAATTAAAAGTTGTCAGTAAGGTCAAAAAAGCCGGTGTTCACAACGTGAAAAAATCGCAAGAGTTCAACGAATACATCAAAGAGCACTACAAAGTACAATGTCCTGTTTGCAATATTCCTATGGACGATTTCTCAGATATGCTGTTGCACACACGAAAGGAGCATAACCAGCGCGGCTATGCCATGTGCTGTAATCGGAAATTCTTGAAACGCGGCGTTCTTGTCGATCATTTGCGCCGCCATCAGAACCCGGAACTATTTAAGTGTGACATTTGTCATCGTGTAATGGGCCAACGTCGTAGTCTGGAGCTGCATATGCGCATGCACGAGATCAAGCAACGTGGCCGACTGTACAAATGCGAGCAATGCTCAAAGAGTTTCTATAGCTCCGTTGTTTGCGAGCGCCACAAGCTTACACACATTCCTAAGGAGCAGTGGCATGTGCCTTGCACCACTTGCAGCAAGACTTTTCCTAATGAGTACCTAATGCAACAACACATGAAATTGGTGCATTTGCGAAAGTTCGATAAGATTTGCGATGTTTGCGGCAAGTCAATACGTGGGCGTGAAGCATTGGCACGCCACATGGAGGAGCATGCGGGTGCACCACAGAAGATAATTAAATGCCATCTGTGCGAATCCACACTGACAACCAAATATGGTCTGGCGCGGCACATTAAAATGATGCACACGGCAGAGAATCTGCAGCCAATGCAGTGCGAAGTATGCCTTAAAATCTCACCCAGCCTGCAGGCGCATCAGCACCACATTAAGTACACACACAATACGGCACGTACGCACCAATGTCCCATGTGCGAGAAAGCATTTAAACGACCCAATGAGTTGCGCGAGCACATGACAACGCACACGGGGGAGGTATTGTACACATGTCCGCATTGCCCGAAGACGTTCAACTCGAACGCCAACATGCATGCACATCGCAAAAAGATGCACTTTAAGGAGTGGCAGGAATATCACCATAGGCATCAGGCACGACACCGCAAAACAGACACCATCATTTCAGTTAGTGTACGCAAGACAACGGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAGGTTTGA
Protein Sequence: MCFLCTQCTDNSNGIIHFGTPEAELLDINQIIEKHFWLRTKDVTGHICGTCWDKLYAFHNFYTSVELAHKKLLQSTNEITKIVETIPTLAAEVVAGAAVLPPLQVELNENVVKQENRLGDSVAASVKRRRGRPRKQFHDETATTIDSNEFKAVLEQINLNEIKIEFPEADLSIADVLDDQEEQNITDYLHQSEIESEAAEAITKPKQKRTRKIKKRRTKLKVVSKVKKAGVHNVKKSQEFNEYIKEHYKVQCPVCNIPMDDFSDMLLHTRKEHNQRGYAMCCNRKFLKRGVLVDHLRRHQNPELFKCDICHRVMGQRRSLELHMRMHEIKQRGRLYKCEQCSKSFYSSVVCERHKLTHIPKEQWHVPCTTCSKTFPNEYLMQQHMKLVHLRKFDKICDVCGKSIRGREALARHMEEHAGAPQKIIKCHLCESTLTTKYGLARHIKMMHTAENLQPMQCEVCLKISPSLQAHQHHIKYTHNTARTHQCPMCEKAFKRPNELREHMTTHTGEVLYTCPHCPKTFNSNANMHAHRKKMHFKEWQEYHHRHQARHRKTDTIISVSVRKTTEXXXXXXXXXXXXXXXXXXXXXXXXXEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01320663;
90% Identity: iTF_01327382;
80% Identity: -