Shsu015783.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- ZNF574
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000002.1:8460206-8462445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.094 7.8 7.3 0.2 2 23 344 366 343 366 0.96 2 10 2.9 2.4e+02 2.6 0.2 6 23 376 393 376 393 0.97 3 10 0.00014 0.012 16.2 1.4 1 23 399 421 399 421 0.98 4 10 0.00051 0.042 14.4 0.7 1 23 431 454 431 454 0.93 5 10 0.00022 0.018 15.6 2.5 1 23 462 485 462 485 0.97 6 10 8.5e-06 0.00071 20.0 1.2 3 23 493 514 491 514 0.94 7 10 0.0026 0.21 12.2 0.4 2 23 526 548 525 548 0.97 8 10 0.00029 0.024 15.2 6.6 1 23 555 578 555 578 0.93 9 10 2.2e-06 0.00018 21.9 1.2 1 23 584 606 584 606 0.98 10 10 5.4e-05 0.0044 17.5 1.4 1 23 612 635 612 635 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCTTGTGTGCTTTGTTTTGATCGCTGCAAGAGCGACGAATCGTACAAGATATTTTCCGAGGCTGGCTTGCGGCTCAACATTTGCAGCACAATAAACAAACATTTTTGGCTAGAGTTAAGCAGCGCTACGGGAGGCGAGAGAGAGGAAATTTGCTACCAATGCTGGGAGTGCGTAAGCAATTTTAACACATTCTATCAACGCGTCTACAATACACACCAGGAGCGTCGTTGCGATATTAAAAATGTGCCAATCGAGTTCTGTGACGAGACGGAAACAGTCAATCCTCTTGCCTTTGGCGGTGAACTGGATGCATTGGCCGAGGACTTTTTTGCAACTAATGATGTGAAAGTGGAGGTGAACGAACTTGAGCCGCTACCCAAGCTTGAAATGCTCGAAGAACCTGTACCCCAAGCGAAGAGCACTGCAAGCAAACGCGCTTGTGTCGAGCATGCAGCTAGTACTAAGAAGCGCATTAAAAAGGAGCAGCGGACAATTGCCAGTGACTCAGATGGGGACAGACCGTTGGCCGAGTTCCTGGATCAGAAAACATCTTCAAAGCCATCATCAGCAGCAAGTAAACAATCCCCAGTCAAGGGTCCCCAGTTGCGAAGAAGCGCTCGACGTGGCCGCCCACCAAAAAAACCGAGAACACCGCCTGAGTCGCCTTCGGTTAGTCCGAAAAAGGAGTTCGTTTCTGATATTGAACATGATAGTGATCATGATAATGATCATGATAATGATCCTGACATGGACTTTGTGGCCGCCGAAGCATTGCTTGGAACAGAAGATAGCGCCAGTTCGAGCGAAAGCAGCGATAGCGACTCTGGCGATAGTCTGCCGGATGTCGAGCCGGAGGAGCGCTATGCAGAGATACCAAAACGGGTTGTAGTCAAGCCCAAAAAGTATCGGAAGCGTCCCAAACCACTGGTGCCGCCTGTGCGCATGAGTCGTGAGGAGCTCGAAAGACGGAAGGCGCAACAAAACGAGTACGATGAGATTATTTTTGAGTTTTTCAAGAAGCTGCCATGTCACGTATGCAATCTGCTAGTGCCCAATTTCGGAGATATGCTTCGCCATCTGCGCATGTCCCACAATATTGAAAGTGGCTTCATTGCCTGCTGTGGTCGCAAGTTTCACATACGTCGCGGTCTAGCTGAGCATGTCCTGGTCCACAATAATCCTAATCACTTTATGTGCACGCAGTGCAGTCGCGTGTTTCAGGACTCCAAAACGCTGGAGACGCACGAGCAAACGCACACGAATCCCCAAACGGATAAGCGCATGTACCCGTGCGAAAAATGCTCCAAGACCTTTACCACAAAAGCCGCTGTCGCGTATCACAATATGTCCAAACATGTGCCCAAGTCGGACTTCAAATATACCTGCCCAGATTGCAATAAGAAGCTGCCCACAGAGCGCAAGCTTAAAGAACATCGACGACATATGCATGATCCGGAGACTGCAATAATCTGCGATAAATGTGGCAAAACATTGCGTACTCAGGCAAATCTGAAGAAACATCACGAAATGGAACATTCGGATACGCCACGCCCCAAGCCGGATCCCGTGCAATGCGAGATTTGCGGCACTTGGCTGCGTCATGTATCTGGCCTCAAGCAGCACATGAAAACAGTGCATGAACCTCCGGGTGGTGAGCATCGCTGTCACATCTGCGACAAGACGTCCACCAATTCTCGCGCTCTAAAACGACACATTTATCACAATCATCAATGCGAAAGAAAGTTCCGCTGTACCATGTGTGAGAAGGCCTTTAAAAGGCCACAGGATTTGAGAGAGCACACATCGACGCACACGGGCGAGGTGCTATACACCTGTCCAAACTGTCCGCAGACGTTCTTTTCCAATGCCAATATGTACAAGCATCGCCAGCGATTGCATCGTGCCGAATGGGAAGCGGATCGCAAGAAACCGCTACCTCCCAACATAATGCAGCAGGCAGCCACGAAGAAGCGTCAGGCCAGCAGTGCCGTCCCAGCGCTGTTCGGGCAACACTCTGAGCCCACTGCCACAGTTTCCCTCAAGCAGGAATTACAACTAATGCATTAG
- Protein Sequence
- MAACVLCFDRCKSDESYKIFSEAGLRLNICSTINKHFWLELSSATGGEREEICYQCWECVSNFNTFYQRVYNTHQERRCDIKNVPIEFCDETETVNPLAFGGELDALAEDFFATNDVKVEVNELEPLPKLEMLEEPVPQAKSTASKRACVEHAASTKKRIKKEQRTIASDSDGDRPLAEFLDQKTSSKPSSAASKQSPVKGPQLRRSARRGRPPKKPRTPPESPSVSPKKEFVSDIEHDSDHDNDHDNDPDMDFVAAEALLGTEDSASSSESSDSDSGDSLPDVEPEERYAEIPKRVVVKPKKYRKRPKPLVPPVRMSREELERRKAQQNEYDEIIFEFFKKLPCHVCNLLVPNFGDMLRHLRMSHNIESGFIACCGRKFHIRRGLAEHVLVHNNPNHFMCTQCSRVFQDSKTLETHEQTHTNPQTDKRMYPCEKCSKTFTTKAAVAYHNMSKHVPKSDFKYTCPDCNKKLPTERKLKEHRRHMHDPETAIICDKCGKTLRTQANLKKHHEMEHSDTPRPKPDPVQCEICGTWLRHVSGLKQHMKTVHEPPGGEHRCHICDKTSTNSRALKRHIYHNHQCERKFRCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPQTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMQQAATKKRQASSAVPALFGQHSEPTATVSLKQELQLMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325138;
- 90% Identity
- -
- 80% Identity
- -