Shsu010760.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- -
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000004.1:4196557-4202832[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.038 3.1 8.6 0.2 1 23 1057 1080 1057 1080 0.94 2 13 3.4 2.8e+02 2.4 0.2 1 23 1249 1271 1249 1271 0.91 3 13 0.00014 0.011 16.3 2.7 2 23 1274 1295 1274 1295 0.97 4 13 5.2e-05 0.0043 17.6 0.2 3 23 1303 1323 1301 1323 0.98 5 13 4.4e-07 3.6e-05 24.1 4.1 2 23 1330 1351 1329 1351 0.97 6 13 4.1 3.4e+02 2.1 0.4 5 23 1364 1382 1362 1382 0.96 7 13 4.5 3.7e+02 2.0 7.6 3 23 1389 1410 1387 1410 0.93 8 13 0.11 9 7.1 0.2 2 23 1421 1441 1420 1441 0.96 9 13 4.2e-05 0.0035 17.9 0.4 1 19 1447 1465 1447 1469 0.95 10 13 1.2e-05 0.00099 19.6 0.5 1 23 1477 1499 1477 1499 0.98 11 13 7.8e-05 0.0065 17.0 7.6 1 23 1505 1527 1505 1528 0.96 12 13 0.00015 0.013 16.1 5.9 1 23 1533 1555 1533 1555 0.98 13 13 0.022 1.8 9.3 8.2 1 23 1561 1583 1561 1584 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACTGTGTGCAGTGCCCCGTGTGCACTTTGTATTTGCATGCGGGCATGAATCTCTCCGATCACTTGGAGACACATCCCAAGGAGCAGGTCATTAAGGCATTGGTGAAAATGACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCGATTAAGGCAGTTAAAAGCGCGCCACCCACGACTGAGGCGCCAGCCACCACATCCAACAACAACAGTAACAGTAACAACAACAACAACAACACACCCACCATAAGCAGCAGCGTGGCCGCTGTCTATCCGGCAACCCTGGCAACAGACTATCGTTACGAACAGCAACAGCAGCTGCATGGCTTTCCACGTAGCACAACCACCACACTGGTGATACCACAAGCGCCACAGCAGCACCATAATTTCTTGGCCAGTCAACAATCGCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCGCCTCCTTTGCAGCTTTTTGCACAGCAGCCGACGTCAACGCAGTCGCATCAGAAGCCTCCACCCGCCTATGGCGCCGCCATCAGTCAAATTCGATCTCAGCACAACCAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCGTAAATGTAGCACCACCGAGTGGCAAACAACACAGCAACAAAATCCACACAGATATCTTTTTGAATCCACCGCCACCACCACAGCTCACAATTCCATCTGCGTCGTTGTCGTCGACCTCCTCCAGACTGCAACATCCCCCACCCCAACACCACCAACAATCCACCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCAAGTAATTCGCCCTTTGGTGCACTGCTTAATGCAGCGGCTCATGCTGCTTGCTCCTCGCCCGCCGCCTCCACTGGAGCTTCAGTGCTGCGCTACGCCGAATCGCCCGTGGCTCACTATCTGGAGCGTGAGAATGGTGACTTCATAGTGCAGGAGACACCCAAGCACATTGTGGAATGTGTCGAAAAAGACGATGGCGAATTCTCGGTAATTGAGCGCATCTATCAGTCGCCGCCCAGCGTTCTCCACATACACGACGATGACGAGGAAGAAGAGGAGGCGGACGCGGATGCGGAGGCAGAGGAGGAGGAAGAAGATGAAGAACAAAGCACAAGTTCCAAGTTCATGGGCAGCGGCACCATCAAGTCCAAAAAGAATCGGGTGACGGTTCTTAGCGATGTGCCGCTTAACATGAACGAGTATCTGGATCTGGTGGGCAACATTGTGGCCTCGAGTCGCATTGGTGCAGCTCGTCCCTTTGCCGCTGTGGCGCCCATACCGCTGGTCAAGGTTGAAAAGGAGGAGCCAATGGACGAATACGAGGCCAGCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCATGGCCAGCACCAGTGGAAACGTTGCTGCCGAGGATCTCACAGAGCCACCGCCCATGAAAGTGGAGGTGGAGCCAACGGCGCTGTTGCCACAACGCTTCTCGGCACCGGGTCAGCTGCGTGGACCCAAGAAATTAGTCATCAAACCAAAGGTCACGGTCACGGCCACGACGACGACGACGACGAAAAAGACTGAGAACAGCAGTAGCAGCAATAGCAACAGTAATTGCGCCGAATCCCACAGCATATCAGCAAATACGCCCGCCGAGCTGGTGCAGATCAAGAGCGAGAACGTCGAGGCATCCACATCCAGTGGCAGCATATTGGAAAAGCATCTGACATCCAGCAGCTATGCGGCACAGCAGGCACGCAAACACTCCGCCGCTAACGATGATGATGCACGTGTGCTGCTCGAGTTTGCCAACTCGAAGCAGCTGCCATTGCCGGGCACGAGCAATCATACAACGTTTGTGGTGAATGCGGCCAGTTTTGCGTCAGCGGGTTCCGTCTTTGCCACAAGCAGCAGCAGCAGCAATGTGCACAGGTCAGCCAAGCCGGGCGATGAATATATTCTGCCGGATGACGCTAAACTGGAGGAGGATGAAATTGTGATATCCTCCTCTTCGCATGTGGAGCAGCCCAGCAACTTTATTGCAGCTCTATCTGCTGTCGACTGTTGCAATGCAGCCGTTGATAGCGATATGAGTGAGGCTAAGTACTTGGATCTGGATGCCTGTAAGCGGGAACAGCTTAGTAATAGCAGCAGCCATTTGCCCTCTGCATCGACCACATCCTCATCGTTTCATGCCGCTGCAACAGAGAGTAGTCTCGTTGGAGGTCTGGGTCTGAATATACGCACCGATGAGAAGATGCCCGCCAAGGGTGAAATATCCGAGCAGGAAAGCAACTGCGACATTGAGAACTCCTGGAGTCAGTCGATGTATGGAGACATATCACAGCGTTACTTTAGGAATCAATTTACGGATGGCTACAATCATCAGCTGGCCGATTGGCGTCACGATTACTATCCGGCGCAGGATCTCAGTAGCCACCAGAGGGAGCAAAAGCGTTTTGACTTCAACGCGGCCGCCTCGGAGTACGCACAGGCGACCGAGCTGGAAGCTTCTTCAAGCTCAACTAGAAACAATCAGTTGTTGGATGCACAGCCCACCACTTCCTCATCGTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCGACATCTCGCGCTGCCGCCGAAGCGGAGGCAGTTGCAGCAGCGCTGGCGCAACGGAAGCCACCACGTCGCAAGATCTACAAGTGTCCGCACTGTGTGGCCATCTTCGAGAAGCTAAAGGAGCGCAATGCCCACATGATTGGTGAGCACAATTATGTGCGTCAGAATCGTCGGCTCATTTGTACACAGGCGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGGCACAGCACAGAGGGTGCTCAACACGAAGATTCTAAGGATGGTATTGTGAAAATCAAGCAGGAGCACTGCCAGGATAAGCACGATGCAGCTTCGGAACAGTTGCTGGGCCACTTGGAGCTGCCGGATGTCAAGGATGCAGGCCTGCTCGATGCCAGCGGTGAAAACGGACACGATGCGGACATTAAGCCACCAACTAGCGTTACTGATGTGGAGGCAAAGCCAGGCATTGCACCGCTGGCGATGACAACACCTGCTGCCAAGTTGGCGGCTCTGTATCGCATGTTAATTGCCTACAATGAATCGAAACTGGGCCAGGAGCGCAATAATCTCAGCGAACTGGAGCAAAAGGCCATGGAGAAGTCCATATTCTTGTGCTACATCTGCCGCACTGATTTCCCCTCTGTCAAGCTGTACGATGCACATCTAACGGAACATCCCGCCGAGTGTTTTACGTGCGGCAAGAAATTCTATCGCTGGAAGAACTTTTCGCTGCATCTAAAACGGCATCTGGGCTGGAAGGAGTTCGGCTGCTATGTCTGCGACAAGAAGTTCGTGGTGCGCAGCGCTCTTGTCGAGCACATGCGCATGCACACTGGCCAGACACCACTCAAGTGCAAGATATGCGGTAAAAAGTTCAAGCGTTACTCCAACCTGACGCAGCATCGCAAGCGCCACACGAAGATGACGGTGCGCCGGAAGGAATATGTGTGCCACTGTGGCGAGGTGCTGCCATCAAAGGCACGCTTCCTGTGGCACAAGGAGACGCACGACTTAAAGCCCAAATGCTGTCCGCACTGTTGCGATCGTTTTGTGCACGCCAACTCGCTGCGTCGACACATTCGACTGGCCCATTCGGACAAGTTTGACTATGCCGAGCCCATGGAGTGTCCCATGTGCAAGCAGATCTTTGCCAAGACATCGATTAAGGCGCACATGGCGACACATTCGACGGATCCGCAATACGATTGCGCCATTTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATACATTCGTGGGTGCATGCGAATCGCACAGCCAAACCGTTCAAGTGCGAGTACTGCCCCAAGGCATTTGTACGTGAGTTGGACTTTAAGAACCACATGAATGCGCACAAGCAGATCAAGCCCTACACCTGCGAGTATTGTGGTTGTAAGTTCATACGCAAGTACAACTATATGCGGCATCGACGGGAGCATCATGGCAAAAAGAAGTTTACGTGCGATCAGTGCGACAAGTCTTTCCATCGCCACTACTATCTGATTGAGCATCGGCGCATTCACACTGGCGAGCGACCCTTCCATTGCACTATTTGTGGCAAGAGCTCGACCACAAAGACCAATCACAACAAGCATCTGAAGATTCATCATTCGCGCGATCCCTTCACTGTGGAGGTCTAA
- Protein Sequence
- MVDCVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVKMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPIKAVKSAPPTTEAPATTSNNNSNSNNNNNNTPTISSSVAAVYPATLATDYRYEQQQQLHGFPRSTTTTLVIPQAPQQHHNFLASQQSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPLQLFAQQPTSTQSHQKPPPAYGAAISQIRSQHNQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVNVAPPSGKQHSNKIHTDIFLNPPPPPQLTIPSASLSSTSSRLQHPPPQHHQQSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSSNSPFGALLNAAAHAACSSPAASTGASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYQSPPSVLHIHDDDEEEEEADADAEAEEEEEDEEQSTSSKFMGSGTIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGAARPFAAVAPIPLVKVEKEEPMDEYEASLXXXXXXXXXXXXXXXXXXXRMASTSGNVAAEDLTEPPPMKVEVEPTALLPQRFSAPGQLRGPKKLVIKPKVTVTATTTTTTKKTENSSSSNSNSNCAESHSISANTPAELVQIKSENVEASTSSGSILEKHLTSSSYAAQQARKHSAANDDDARVLLEFANSKQLPLPGTSNHTTFVVNAASFASAGSVFATSSSSSNVHRSAKPGDEYILPDDAKLEEDEIVISSSSHVEQPSNFIAALSAVDCCNAAVDSDMSEAKYLDLDACKREQLSNSSSHLPSASTTSSSFHAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFTDGYNHQLADWRHDYYPAQDLSSHQREQKRFDFNAAASEYAQATELEASSSSTRNNQLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHSTEGAQHEDSKDGIVKIKQEHCQDKHDAASEQLLGHLELPDVKDAGLLDASGENGHDADIKPPTSVTDVEAKPGIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYICRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMTVRRKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPHCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGKKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -